LOCUS       NM_001100712             879 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus dynein light chain Tctex-type 4 (Dynlt4), mRNA.
ACCESSION   NM_001100712 XM_008764071
VERSION     NM_001100712.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Korrodi-Gregorio,L., Vieira,S.I., Esteves,S.L., Silva,J.V.,
            Freitas,M.J., Brauns,A.K., Luers,G., Abrantes,J., Esteves,P.J., da
            Cruz E Silva,O.A., Fardilha,M. and da Cruz E Silva,E.F.
  TITLE     TCTEX1D4, a novel protein phosphatase 1 interactor: connecting the
            phosphatase to the microtubule network
  JOURNAL   Biol Open 2 (5), 453-465 (2013)
   PUBMED   23789093
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 879)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 7, 2022 this sequence version replaced XM_008764071.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1589722.1,
                                           SRR22582424.178338.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMN12840106
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                JAXUCZ010000005.1  135842044-135842089
            47-115              JAXUCZ010000005.1  135842499-135842567
            116-879             JAXUCZ010000005.1  135843044-135843807
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..879
                     /gene="Dynlt4"
                     /gene_synonym="N22.1; Tctex1d4"
                     /note="dynein light chain Tctex-type 4"
                     /db_xref="GeneID:102551208"
                     /db_xref="RGD:1565942"
     exon            1..46
                     /gene="Dynlt4"
                     /gene_synonym="N22.1; Tctex1d4"
                     /inference="alignment:Splign:2.1.0"
     exon            47..115
                     /gene="Dynlt4"
                     /gene_synonym="N22.1; Tctex1d4"
                     /inference="alignment:Splign:2.1.0"
     exon            116..879
                     /gene="Dynlt4"
                     /gene_synonym="N22.1; Tctex1d4"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..783
                     /gene="Dynlt4"
                     /gene_synonym="N22.1; Tctex1d4"
                     /note="tctex1 domain-containing protein 4-like; putative
                     tctex1/2 family protein; Tctex1 domain-containing protein
                     4; Tctex1 domain containing 4"
                     /codon_start=1
                     /product="dynein light chain Tctex-type 4"
                     /protein_id="NP_001094182.1"
                     /db_xref="GeneID:102551208"
                     /db_xref="RGD:1565942"
                     /translation="MACRALSSRHQEEEATKDLALKLPPGKPGGHLPSIDETRPIGPG
                     PASRRGSLPGLHPSFSRRNSLAGPLVGPGGRRPSLGPMPPLGSRVSFSGLPLMPARRV
                     APSYRIEPAPGEHWEAASAQRALKAALTTQLSDVCYSGTEAGKLVQALCEQIHIRVRE
                     LNLPRYKLVCNVVLGPREGQGVHVVSRALWDAAHDGLASATFTNPSLFAVATVHAVYW
                     E"
ORIGIN      
        1 agtaaggata gtggggccag cagagcttgg aggccaaagg ctacagctct taaccggctc
       61 taagcgccta ctagcccacg cagccccaaa ctgacctact tgttccaaac aaaaggcagg
      121 tccatggctt gcagggccct gtcatccaga caccaggaag aggaggctac caaagacctg
      181 gctctgaaat taccaccagg gaaacctgga ggtcacctgc ccagcattga tgagacccga
      241 cctataggcc caggcccagc ttcccgtcga ggctccctgc caggcctaca cccatccttt
      301 tcacgccgga actcactggc agggccttta gtgggtcctg gaggtcgacg accatctctg
      361 ggtccaatgc cccctctagg ttcacgagtt agtttctctg ggctacccct gatgcctgcc
      421 cgtagggtgg caccctcgta ccgcatagaa ccggcgcccg gagaacactg ggaagctgca
      481 agtgcccagc gtgccctgaa ggcagcattg accacacagc tgagcgatgt gtgctactcc
      541 ggtactgagg cggggaaact ggtgcaggcg ctgtgtgaac agatacacat tcgtgtgagg
      601 gagctcaacc taccccgtta caaactggtg tgcaacgtgg tgctggggcc acgcgaggga
      661 cagggtgtgc acgtggtcag ccgagcgctc tgggatgcgg ctcatgatgg actggcctct
      721 gccaccttca ccaacccttc gctgtttgct gtggctaccg tccacgcggt ctactgggaa
      781 tgataaggcc ttcaagttct gaaaaacggt ttattatccc tggaggaggc ccccctgggg
      841 ctcacatccc aataaataaa tgtctgttaa taaataaaa
//
