LOCUS       XM_039104118            2436 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dynein cytoplasmic 1 intermediate
            chain 2 (Dync1i2), transcript variant X6, mRNA.
ACCESSION   XM_039104118
VERSION     XM_039104118.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2436
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2436
                     /gene="Dync1i2"
                     /gene_synonym="Dnci2; Dncic2"
                     /note="dynein cytoplasmic 1 intermediate chain 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 37 ESTs, 4 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 42 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116659"
                     /db_xref="RGD:620174"
     CDS             344..2200
                     /gene="Dync1i2"
                     /gene_synonym="Dnci2; Dncic2"
                     /codon_start=1
                     /product="cytoplasmic dynein 1 intermediate chain 2
                     isoform X5"
                     /protein_id="XP_038960046.1"
                     /db_xref="GeneID:116659"
                     /db_xref="RGD:620174"
                     /translation="MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAA
                     VSVQEESDLEKKRREAEALLQSMGLTTDSPIVFSEHWVPPPMSPSSKSVSTPSEAGSQ
                     DSGDGAVGSRRGPIKLGMAKITQVDFPPREIVTYTKETQTPVTAQPKEDEEEEDDVAA
                     PKPPVEPEEEKILKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALS
                     EQINIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV
                     ASYNNNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYS
                     GQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSL
                     DMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISE
                     MFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNSDYVY
                     DVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIA
                     VGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINASRADAEEEAATRIPA"
ORIGIN      
        1 ccccaggatg tgaggtgtag ttgtccagct tttgccaaag cggaaacgct tcggatcccg
       61 cggccggtgt gtctctattt caccggtcag attctgtttt gcaaaaggta agtcacggaa
      121 agggcgccct tccgtgccgg gcggtaaaga ttctgttttt gtgggagacc gcgtcggcga
      181 agtcatttgt cccttggctc acgccgtagt ggccgccgcc catccctctt tgtgtgcttg
      241 ggacgccagg gatctgcggt ggcgacagtt ggagagggac gttcccggaa agttaccggt
      301 cagaagaaac tatctccaca tcaccacctg acaggtcaca accatgtcag acaaaagtga
      361 attaaaagct gagttggaac gtaagaagca acggttggcc caaatcagag aagaaaagaa
      421 gaggaaagaa gaggaaagga aaaaaaaaga aactgatcag aagaaggaag ctgcagtctc
      481 tgtgcaggaa gagtctgacc ttgaaaagaa gagaagagaa gccgaagcct tgcttcagag
      541 catggggcta actacagact ccccaattgt tttttctgag cactgggtcc ctcctcccat
      601 gtctccatcc tccaagtcgg tgagcacgcc aagtgaagct ggaagccagg actctggaga
      661 tggcgccgtg ggatctagac gaggacctat taaacttgga atggccaaaa ttactcaagt
      721 cgactttccc cctcgagaaa tcgtcacata tacaaaggaa actcagaccc cggttacagc
      781 tcaacccaaa gaagatgagg aggaggaaga tgacgtagca gctcctaagc ctcctgttga
      841 acctgaagaa gagaaaattt taaaaaaaga cgaagagaat gatagcaaag ctccccctca
      901 tgaactaact gaagaagaaa agcaacaaat tttacactca gaagaatttt taagtttctt
      961 tgaccattct acaagaattg tagaaagagc cctctctgag cagattaaca tcttctttga
     1021 ctacagtggg agagatttgg aagacaaaga aggggagatt caagcaggtg ctaagctgtc
     1081 attaaatcga cagttttttg atgagcgttg gtcaaagcat cgagttgtta gttgcttgga
     1141 ttggtcatcc cagtatccag aattacttgt ggcttcctat aataacaatg aagaggctcc
     1201 tcatgagcct gatggtgtgg ccctcgtatg gaatatgaag tacaagaaaa ctaccccaga
     1261 gtacgtgttc cactgccagt cagctgtaat gtctgctaca tttgcaaaat ttcatccaaa
     1321 tcttgttgtt ggaggtacat actcaggcca aattgtgctt tgggataacc gtagcaataa
     1381 aagaaccccc gtccagagaa caccactgtc agctgctgca cacacacacc ctgtctactg
     1441 tgtaaatgtt gttggaacac aaaatgctca taatctgatt agcatctcta ctgatggaaa
     1501 aatttgctcc tggagcttag acatgctttc ccatccacag gatagcatgg agttggttca
     1561 taaacagtca aaggcagtag ctgtaacatc tatgtctttc cctgttggag acgtcaacaa
     1621 ctttgttgtg ggcagtgaag aaggttctgt gtatacagca tgccgccatg gcagcaaagc
     1681 cggaatcagt gagatgtttg agggacacca gggacccatc acgggaatcc actgtcacgc
     1741 agctgttggc gcagtagact tctcacatct gttcgtcact tcgtcttttg actggacagt
     1801 aaaactttgg acaactaaga ataacaagcc tttgtactca tttgaagata attcagacta
     1861 tgtctatgat gttatgtggt cacccaccca cccagccctg tttgcctgtg tggatggcat
     1921 ggggagactg gatctatgga atctcaacaa tgacacagag gtgccgactg ccagcatttc
     1981 tgtggagggc aaccctgccc ttaaccgtgt gagatggacc cactcgggaa gagagatcgc
     2041 cgtgggtgat tctgaaggac agattgtcat atatgatgtg ggcgagcaga tcgctgttcc
     2101 ccgaaatgat gaatgggcaa gatttggccg aacactcgca gagattaacg caagccgagc
     2161 tgatgcagag gaggaagcgg ctacccggat tcctgcctag gcctggaggg tggccgtagc
     2221 cttatcgagt ctggcaaaga ggatgaagta gatcctaaac tatttgcatg cttctgatta
     2281 aacgagaatt aaaagaaaac tccatggata gactgggttt aatacaggaa gcaaagctta
     2341 ccgagccctt ttatattcta ttccctttgc tttggattgg tgtcattttt aatacagctg
     2401 acaactttac agaatgcagc cttttctgaa ttctaa
//
