LOCUS       XM_008771031            7257 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus double homeobox 4 (Dux4), transcript
            variant X1, mRNA.
ACCESSION   XM_008771031
VERSION     XM_008771031.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008771031.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7257
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7257
                     /gene="Dux4"
                     /note="double homeobox 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 88 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:306226"
                     /db_xref="RGD:1311053"
     CDS             3838..4911
                     /gene="Dux4"
                     /codon_start=1
                     /product="double homeobox protein B"
                     /protein_id="XP_008769253.1"
                     /db_xref="GeneID:306226"
                     /db_xref="RGD:1311053"
                     /translation="MDLNCTGGLLEKEARRRRIILNQSQKDTLRVWFEKNPNPDLATR
                     GHLAKKLGISESQIMTWFQKHRKIRKQVEFECCSEESQEQGQDKPRVKEAGRSRTHFT
                     KFQIDILIEAFEKNRFPGIVTREKLAQETGIPESRIHIWFQNRRARHPDPKQGTRATS
                     HPPESSQCPAQKTTGQLAPSKDPTSSCSVILPLSPPHTPNGPLDLSRGRQKQLPETTV
                     LQPSQVVQRRGDDQNPSLFIDHLSEVKSPGEKEGFHTQAPLQLPIQKRGHNPSENSGL
                     SVPPLEDSTQVSAVNQHFRKPDQKDLAFLQHWDEWFQSMLAEWMPDKGYWAVKTDLHP
                     WQAQLLQLLYVSEQTDQTPQQPV"
ORIGIN      
        1 cccggctccc agcactcagg gagggggcgc ctccgctgag ctcccgcccc taaaacttcc
       61 cagccggccc acgtccgacc cgccccctct gcatctgcgt ctggtagcgg gctgtcactc
      121 tggctctatg gcagagtggc cccatgctct ctgacttgtg actgactgtt ccttgttttc
      181 agagtcccag agtagcctgg tctcaaacaa tagatccttt ctccgctagg catctggtgc
      241 agcactcctg aagcaccggg ttgggtaggg gtttggatgc cgggattgga tgcaggattt
      301 tttttttttt tccgcagcta acgggcccca ccggaggagg cattatttcc cctcccccct
      361 tccctctccc ccctggatta aggcttgcta gtactgaggg tttatcctgc agctgggact
      421 gccagtcttt tgtcaccaag gctgacaggc ttacgagtgg ttggggctct gactcttctt
      481 tccccctgcg gcgattgggg ctgcagattg cttccgcctg tccttgcctt agtttttcta
      541 ttttaccgtc ctttttcatc tgtcttgtca cctctttctg atgctcattc tttctttccg
      601 tcccgaggat atggtctatc ctttgttact ctgactcttc tatctcggag ttgaatggag
      661 gaagcgtcca atccgccatc ttaccccaga aagcaaacat tttcccttct gatacagtgg
      721 ggaagtgggt atgtggagtg gggagaggag gagactacga agaggacgag gtagtatcag
      781 tgggacacca agttgctgct ggagagatgt tctccacatc cttcagtttc agatgcgagt
      841 gccctaatta ggtaatttct gctgcttgac tgaaacaccc aggctcgatc cctgattcct
      901 gtaattgcaa ttacatggga ggggaggaac ggctactggg tctttccttg ctttgccgtt
      961 cgggtaggtt cctgtgggtc gaggtagtat ttttccacac acgtattttt tttcattagt
     1021 ttagtcacgt ggctttttta aaactaacac tcgtatcata cacagatatc tgtaacacac
     1081 tccataaagg ttaattaatg caaccaattg catctaggta caggggctcc cagggttttt
     1141 gctttttttt tttttaactt ttgctttctt aattattttt taagtgaaca caacaatgtg
     1201 ttttatccca agccacaaga atattatctt ttgtcgacaa aatatatata tatatatatt
     1261 tttaacatta cgtgcgtatg aaatgtaagt tttggctaca gtcagtagaa aattggcaat
     1321 attaaggggt cagcaagtaa tctttaagac attaatgtct gactataata taaaacatac
     1381 tagaaaactc aacggtagaa cagaccccct gtggtaaagc cttagctttc gtaggattgc
     1441 tgtgattgaa tggatcacct ctacaggttt ggtacgcacc tagaaggaaa aagcctgaca
     1501 catctgtgag cgattctctc gattaggtta ctaaagcgag aaggcccact tcaagcaggg
     1561 tactccattc ccgggacata gtgcttgggt tctggactgc gttaaaacgg agaagtggct
     1621 ccgagcagcg gcgcccatgg ctgtcttcct cctgacttcg gaaacagtat gaccagctgc
     1681 ttcaggctcc tgctgccccg acatccctgc atggtggact gtgccctgga actgtgagcc
     1741 aaaatgaact cttcctttct taaattgctt gcgtcagggt agatttatca cacccagaaa
     1801 ggtaactaag tttgtttctc aaatatcccg agcctattag actcaccgaa gcaccaactg
     1861 tctctttctt ctttagcagc agagacaact gaaattattc ctcactagca gttttaattc
     1921 aactgttgct ttcaacagag gcacaatagc catgcaaact tggcatgcct atgtctcttc
     1981 taagctattc atagatgcat ataaaaacag caagatcata gttctatctg tctatacttc
     2041 tcccctgcga acacatttac tcaggaggac aaggctcttg ggtgaggttc attctttcct
     2101 taccaaacgt agaatgtggc tatgtaaagt tatttattct ttcattcact cattcctttg
     2161 cttgcgtgtg tatggggtgg ggcacattgg tgctatggca tctgtaaatg tcagaggacc
     2221 tcttgtggga gttgcctctc tcagattgtc aggatttagc agcaagcacc ttgacctgct
     2281 cagccacctc gcaggcctct ggagttatct gttattaata tacggtgtat cgctagagaa
     2341 ggtaatggaa gagtctttca agtctgcata taagcatgct cataaagcac gtatatataa
     2401 tgtgcacaca tatgcacatg tatagcagca ggacaggcta agaaaggaga gggaagcagg
     2461 ctgggacttg gccagagcca cagtgctggt ggctctacat ccttgaccct ctccaggtga
     2521 ggtcttcagc tatactgttt ccccttccta cttagacggt taaccccacc ctactggatt
     2581 aaggaaccta gttcttctct ttaatcacat ttcccaagcc cattcacggc acacccacac
     2641 tgaggttgag tcaatacccc agagagctta ggctggcttc ttgggtgtac aatcaggtca
     2701 gcaagggcag aacaaaagca gaaatgtgtt ctagcagaag atgagaaaaa gttgaaacat
     2761 aaggaaaaag gggagactcc tagtatatta cacaatatgg ccaagtccag gtgattaaga
     2821 gataagacaa ccggaaagga ataggagggc ccaggactgc agctcagtga cagaagactt
     2881 ccttacccag cctgtctgag actggcttcc atcccaagca cagcaaacaa tggggagggg
     2941 gaggaggagg aggagatcaa ggattataga aataacatgc aggtacaacc tagagagctc
     3001 agaagtaaaa catggagagg tgttatggag gaggcagaat tacccagaag aatctgtact
     3061 ttcctccaaa ttcagcttct cctttgtggt aattacttca aattcctctt aggtggctgt
     3121 tttagtcaaa ttttacattg ctctaacaag tgcccccaca gagacagctt aagagaggaa
     3181 gaattcattt cttgctcact agttcagagc tctatctgtg atcatggggg gtccattgct
     3241 gtgggcccaa ggtcaggcag aatatcatgg cattgtggta gtgagtctga ggttcatttt
     3301 tcttggatat gtagaagagg gagagaggga gagagggaga gagggagaga gggagagagg
     3361 gagggaggga gagagggaga gagggaggga gaggaagagg gagagggaga gggagaggga
     3421 gagggagagg gagagggaga gggagaggga gagggagagg gagagggaga aaagaatgca
     3481 ttattccagg gccaagacct gtcctttaaa gtcacacagc atccatagtt cattgtctgt
     3541 caggagtcct aaacttcagt ccatcagagg gttaaaccag tgattagctc aactctctta
     3601 tgatctaatc ttcactggag acaccttaga cacacccaga ggccggtttc actaatctcc
     3661 caggaacctc ttaatccaat caagttgact gtcaagattg gccagtgctg tcgcatattt
     3721 aatgaaggga ttaaacaaca ggtatttaag ggatgggtgg gccactctgg gctttgctac
     3781 atcctgtgtc tctgtgaata gctctcttgg gcctcgtggg atccaggtgg ctgcagcatg
     3841 gatctgaact gcactggtgg cctactggaa aaagaagccc ggagaaggag gattattcta
     3901 aaccagagtc aaaaggacac ccttcgtgtg tggtttgaaa agaatcccaa tcctgactta
     3961 gctaccaggg gacatctggc taagaaactc ggcatctctg agtctcaaat aatgacttgg
     4021 tttcagaagc acagaaaaat acggaaacaa gtagagtttg aatgttgctc tgaagaaagc
     4081 caagagcaag gacaggataa acccagagtt aaagaagctg ggaggagcag gacgcatttc
     4141 acaaagtttc agattgatat tctaatcgaa gcttttgaga agaatcgatt cccagggatc
     4201 gttaccaggg aaaaactggc tcaagaaaca ggcatcccag aatccagaat tcatatatgg
     4261 tttcagaacc ggagagcacg gcacccagac ccaaaacagg gtactcgggc aacttctcat
     4321 ccgcctgaga gcagccagtg ccctgcccag aagactactg gtcaacttgc tccttccaaa
     4381 gatcccacca gcagctgttc cgttatattg cctctctctc caccccacac gccaaatggt
     4441 cctttggatc tctctagggg ccgtcagaag cagttaccag agaccacagt actacagccc
     4501 tcccaggttg tacagcgaag gggcgatgat caaaatccct cactgtttat tgatcactta
     4561 tcagaggtaa aaagtccagg agagaaggag ggcttccata ctcaggctcc tttacagctc
     4621 ccaatccaaa aaagagggca taatcccagt gagaacagtg gtttgtctgt accgccctta
     4681 gaagattcta ctcaggtttc agctgtcaat caacacttcc ggaaaccgga ccaaaaagat
     4741 ctcgcctttc tccaacactg ggacgaatgg ttccaatcca tgcttgccga gtggatgcct
     4801 gacaaaggat actgggccgt gaaaactgac ctgcacccgt ggcaggcaca gctgctgcag
     4861 ctcctctatg tgtctgagca gacagaccaa actccacagc agccggttta agcctcaagc
     4921 ctttttcgtt aattcctctt ggacatggat tttctattct ttctgcatcc aagtccccaa
     4981 catgggttcc tgcacatggc tcggggagct tctcagaaga gtttcaggtt cttcttcaca
     5041 tggggagaag tacatcagtg agtcagattc aggagaaacc tgtccttggg catgaaatca
     5101 gtggatttat tgaagcctag gtatgcagaa ttacagaaca agttcaagtt agtatatgca
     5161 taaacctcat ggacacacaa agggagccat tatttttatt cttaatttat tcttgagatc
     5221 tgatcttgct gttattccgg ttggccttga gctcctgcgc ttaagtcagt ctcctgcctc
     5281 cgcctcctca agagtcagca ctacaaatac atccatgtcc accttggtct caattttaat
     5341 tatggtttaa aaaaaaatca tatagaaaag tcacggtttc atttaccatc tgttgtgttt
     5401 ttaatctgaa gtgtctctca caagttcatg ctttgaaatc ttgcctctca gccgatggcg
     5461 gtttgaatct gtggagtttt tacatgggtc ctgacaggca gacataggcc agggtgatac
     5521 cttgaaagtt atacccaggg ctggggattt agctcagtgg tagagcgctt gcctagcaaa
     5581 cacaaggccc tgggtacggt ccccagctct gaaaaaaata gaaaaaagaa agttataccc
     5641 accacgtgaa tagcatgtac cacacactcc cgaagtgtag acagattcac atcaccatgc
     5701 ctctctgtga tgatggactg aaacattctg aaaagaatcc caataaacac tcttctgtca
     5761 agttgcttct ggtagatgtt ttggtcacag tgagttagaa gtaactaata cttactggct
     5821 accagcctaa ccgtcactca gtgtgtggca cggtagtgtt aactatgtgc ttattcctga
     5881 cggtatgtac ctgtaacttt catcttgcaa cctgaaactc cacagtcctt gagtcacttg
     5941 aacgaccata gcaatgccac agacggaacg tcccaagtca tagaaaatgt ctattttcac
     6001 agctgtagag ggcagaagcc caattggcag gtgcctgcag ttctgggggc tcttcattgc
     6061 ttggggagaa atagagaaac tgttctctat tttcaaaaga tatttattta ttttgtatgt
     6121 atgtatgtat gaatgcatgt gtatatgtat gtctgtatgc atgcatgtat gtatgtatgc
     6181 atgtgtgtat tatgtatgca tgtgtgtatg tatgtatatg tgtctgggtg gcagtggtta
     6241 tagtcccatg aaggcaagtg cttgtggagg cctggggttt taggtgctct gaatctagac
     6301 ctgtgagcca cctgacagag atgttgaaac tatactcaag ttctctggaa gaatatttgc
     6361 tcctaatcac tgagccatct cgctagtcca tccaccgtat tttgtgaggc agagtctctc
     6421 gctgaagcta gagcttgctg attgagagac tgtctagcca ggcagcacca gggattttcc
     6481 tcactctggt ctcctcagct gaattccctg ggtttcaggg atgctctcag catcggcccc
     6541 tgggttttta acatagattc tggagatgcc aagtcaggtc ctcaggcttg cagagcaagc
     6601 acgttaccaa gggaaccaat tcctcagccc tactgctcct gtgagcttga ctactctagg
     6661 taccgtgggt aggtgaattc gtacaatatt tgcttttgta cttggcttat ttttattgtc
     6721 ataatgtctt catggtgtgt tattgtgtga cttgtgttag gattttcttt tctttttgaa
     6781 gataaataat ttacattata tgtggggtcc acactttgcc cacctccagt ggacactggg
     6841 tagcccctac ctcttagaca gaggaaatgg tgttacagcg aatggcggca tgaagataat
     6901 ataaagatag aattcttttg cacacttcat tgagaccttc ttcccaagtg attctaggtt
     6961 gggttatgtt gatgatcaat gccaacttca gagctggatc ctgatgtctg cttaagctgt
     7021 tatcctcttc tccatagtaa ctccatccct ttccacttcc cacaaagcac agggccgttt
     7081 gttgacattc tcaccagggc ctcttagttc tccttgcttt gataatggct gttctaatgg
     7141 gtgagaggtg gggtttggta atggtgctgt tttcctctcc atgtaaccgc agatttgctc
     7201 tccttgttga attctaaatg cttttaaaat acactcttct tttgtgtgtg tatttat
//
