LOCUS       XM_006252678            6582 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus double homeobox 4 (Dux4), transcript
            variant X2, mRNA.
ACCESSION   XM_006252678
VERSION     XM_006252678.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006252678.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6582
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6582
                     /gene="Dux4"
                     /note="double homeobox 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 40 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:306226"
                     /db_xref="RGD:1311053"
     CDS             3163..4236
                     /gene="Dux4"
                     /codon_start=1
                     /product="double homeobox protein B"
                     /protein_id="XP_006252740.1"
                     /db_xref="GeneID:306226"
                     /db_xref="RGD:1311053"
                     /translation="MDLNCTGGLLEKEARRRRIILNQSQKDTLRVWFEKNPNPDLATR
                     GHLAKKLGISESQIMTWFQKHRKIRKQVEFECCSEESQEQGQDKPRVKEAGRSRTHFT
                     KFQIDILIEAFEKNRFPGIVTREKLAQETGIPESRIHIWFQNRRARHPDPKQGTRATS
                     HPPESSQCPAQKTTGQLAPSKDPTSSCSVILPLSPPHTPNGPLDLSRGRQKQLPETTV
                     LQPSQVVQRRGDDQNPSLFIDHLSEVKSPGEKEGFHTQAPLQLPIQKRGHNPSENSGL
                     SVPPLEDSTQVSAVNQHFRKPDQKDLAFLQHWDEWFQSMLAEWMPDKGYWAVKTDLHP
                     WQAQLLQLLYVSEQTDQTPQQPV"
ORIGIN      
        1 cccggctccc agcactcagg gagggggcgc ctccgctgag ctcccgcccc taaaacttcc
       61 cagccggccc acgtccgacc cgccccctct gcatctgcgt ctggtagcgg gctgtcactc
      121 tggctctatg gcagagtggc cccatgctct ctgacttgtg actgactgtt ccttgttttc
      181 agagtcccag agtagcctgg tctcaaacaa tagatccttt ctccgctagg catctggtgc
      241 agcactcctg aagcaccggg ttgggtaggg gtttggatgc cgggattgga tgcaggattt
      301 tttttttttt tccgcagcta acgggcccca ccggaggagg cattatttcc cctcccccct
      361 tccctctccc ccctggatta aggcttgcta gtactgaggg tttatcctgc agctgggact
      421 gccagtcttt tgtcaccaag gctgacaggc ttacgagtgg ttggggctct gactcttctt
      481 tccccctgcg gcgattgggg ctgcagattg cttccgcctg tccttgcctt agtttttcta
      541 ttttaccgtc ctttttcatc tgtcttgtca cctctttctg atgctcattc tttctttccg
      601 tcccgaggat atggtctatc ctttgttact ctgactcttc tatctcggag ttgaatggag
      661 gaagcgtcca atccgccatc ttaccccaga aagcaaacat tttcccttct gatacagtgg
      721 ggaagtgggt atgtggagtg gggagaggag gagactacga agaggacgag gtagtatcag
      781 tgggacacca agttgctgct ggagagatgt tctccacatc cttcagtttc agatgcgagt
      841 gccctaatta ggttactaaa gcgagaaggc ccacttcaag cagggtactc cattcccggg
      901 acatagtgct tgggttctgg actgcgttaa aacggagaag tggctccgag cagcggcgcc
      961 catggctgtc ttcctcctga cttcggaaac agtatgacca gctgcttcag gctcctgctg
     1021 ccccgacatc cctgcatggt ggactgtgcc ctggaactgt gagccaaaat gaactcttcc
     1081 tttcttaaat tgcttgcgtc agggtagatt tatcacaccc agaaaggtaa ctaagtttgt
     1141 ttctcaaata tcccgagcct attagactca ccgaagcacc aactgtctct ttcttcttta
     1201 gcagcagaga caactgaaat tattcctcac tagcagtttt aattcaactg ttgctttcaa
     1261 cagaggcaca atagccatgc aaacttggca tgcctatgtc tcttctaagc tattcataga
     1321 tgcatataaa aacagcaaga tcatagttct atctgtctat acttctcccc tgcgaacaca
     1381 tttactcagg aggacaaggc tcttgggtga ggttcattct ttccttacca aacgtagaat
     1441 gtggctatgt aaagttattt attctttcat tcactcattc ctttgcttgc gtgtgtatgg
     1501 ggtggggcac attggtgcta tggcatctgt aaatgtcaga ggacctcttg tgggagttgc
     1561 ctctctcaga ttgtcaggat ttagcagcaa gcaccttgac ctgctcagcc acctcgcagg
     1621 cctctggagt tatctgttat taatatacgg tgtatcgcta gagaaggtaa tggaagagtc
     1681 tttcaagtct gcatataagc atgctcataa agcacgtata tataatgtgc acacatatgc
     1741 acatgtatag cagcaggaca ggctaagaaa ggagagggaa gcaggctggg acttggccag
     1801 agccacagtg ctggtggctc tacatccttg accctctcca ggtgaggtct tcagctatac
     1861 tgtttcccct tcctacttag acggttaacc ccaccctact ggattaagga acctagttct
     1921 tctctttaat cacatttccc aagcccattc acggcacacc cacactgagg ttgagtcaat
     1981 accccagaga gcttaggctg gcttcttggg tgtacaatca ggtcagcaag ggcagaacaa
     2041 aagcagaaat gtgttctagc agaagatgag aaaaagttga aacataagga aaaaggggag
     2101 actcctagta tattacacaa tatggccaag tccaggtgat taagagataa gacaaccgga
     2161 aaggaatagg agggcccagg actgcagctc agtgacagaa gacttcctta cccagcctgt
     2221 ctgagactgg cttccatccc aagcacagca aacaatgggg agggggagga ggaggaggag
     2281 atcaaggatt atagaaataa catgcaggta caacctagag agctcagaag taaaacatgg
     2341 agaggtgtta tggaggaggc agaattaccc agaagaatct gtactttcct ccaaattcag
     2401 cttctccttt gtggtaatta cttcaaattc ctcttaggtg gctgttttag tcaaatttta
     2461 cattgctcta acaagtgccc ccacagagac agcttaagag aggaagaatt catttcttgc
     2521 tcactagttc agagctctat ctgtgatcat ggggggtcca ttgctgtggg cccaaggtca
     2581 ggcagaatat catggcattg tggtagtgag tctgaggttc atttttcttg gatatgtaga
     2641 agagggagag agggagagag ggagagaggg agagagggag agagggaggg agggagagag
     2701 ggagagaggg agggagagga agagggagag ggagagggag agggagaggg agagggagag
     2761 ggagagggag agggagaggg agagggagag ggagaaaaga atgcattatt ccagggccaa
     2821 gacctgtcct ttaaagtcac acagcatcca tagttcattg tctgtcagga gtcctaaact
     2881 tcagtccatc agagggttaa accagtgatt agctcaactc tcttatgatc taatcttcac
     2941 tggagacacc ttagacacac ccagaggccg gtttcactaa tctcccagga acctcttaat
     3001 ccaatcaagt tgactgtcaa gattggccag tgctgtcgca tatttaatga agggattaaa
     3061 caacaggtat ttaagggatg ggtgggccac tctgggcttt gctacatcct gtgtctctgt
     3121 gaatagctct cttgggcctc gtgggatcca ggtggctgca gcatggatct gaactgcact
     3181 ggtggcctac tggaaaaaga agcccggaga aggaggatta ttctaaacca gagtcaaaag
     3241 gacacccttc gtgtgtggtt tgaaaagaat cccaatcctg acttagctac caggggacat
     3301 ctggctaaga aactcggcat ctctgagtct caaataatga cttggtttca gaagcacaga
     3361 aaaatacgga aacaagtaga gtttgaatgt tgctctgaag aaagccaaga gcaaggacag
     3421 gataaaccca gagttaaaga agctgggagg agcaggacgc atttcacaaa gtttcagatt
     3481 gatattctaa tcgaagcttt tgagaagaat cgattcccag ggatcgttac cagggaaaaa
     3541 ctggctcaag aaacaggcat cccagaatcc agaattcata tatggtttca gaaccggaga
     3601 gcacggcacc cagacccaaa acagggtact cgggcaactt ctcatccgcc tgagagcagc
     3661 cagtgccctg cccagaagac tactggtcaa cttgctcctt ccaaagatcc caccagcagc
     3721 tgttccgtta tattgcctct ctctccaccc cacacgccaa atggtccttt ggatctctct
     3781 aggggccgtc agaagcagtt accagagacc acagtactac agccctccca ggttgtacag
     3841 cgaaggggcg atgatcaaaa tccctcactg tttattgatc acttatcaga ggtaaaaagt
     3901 ccaggagaga aggagggctt ccatactcag gctcctttac agctcccaat ccaaaaaaga
     3961 gggcataatc ccagtgagaa cagtggtttg tctgtaccgc ccttagaaga ttctactcag
     4021 gtttcagctg tcaatcaaca cttccggaaa ccggaccaaa aagatctcgc ctttctccaa
     4081 cactgggacg aatggttcca atccatgctt gccgagtgga tgcctgacaa aggatactgg
     4141 gccgtgaaaa ctgacctgca cccgtggcag gcacagctgc tgcagctcct ctatgtgtct
     4201 gagcagacag accaaactcc acagcagccg gtttaagcct caagcctttt tcgttaattc
     4261 ctcttggaca tggattttct attctttctg catccaagtc cccaacatgg gttcctgcac
     4321 atggctcggg gagcttctca gaagagtttc aggttcttct tcacatgggg agaagtacat
     4381 cagtgagtca gattcaggag aaacctgtcc ttgggcatga aatcagtgga tttattgaag
     4441 cctaggtatg cagaattaca gaacaagttc aagttagtat atgcataaac ctcatggaca
     4501 cacaaaggga gccattattt ttattcttaa tttattcttg agatctgatc ttgctgttat
     4561 tccggttggc cttgagctcc tgcgcttaag tcagtctcct gcctccgcct cctcaagagt
     4621 cagcactaca aatacatcca tgtccacctt ggtctcaatt ttaattatgg tttaaaaaaa
     4681 aatcatatag aaaagtcacg gtttcattta ccatctgttg tgtttttaat ctgaagtgtc
     4741 tctcacaagt tcatgctttg aaatcttgcc tctcagccga tggcggtttg aatctgtgga
     4801 gtttttacat gggtcctgac aggcagacat aggccagggt gataccttga aagttatacc
     4861 cagggctggg gatttagctc agtggtagag cgcttgccta gcaaacacaa ggccctgggt
     4921 acggtcccca gctctgaaaa aaatagaaaa aagaaagtta tacccaccac gtgaatagca
     4981 tgtaccacac actcccgaag tgtagacaga ttcacatcac catgcctctc tgtgatgatg
     5041 gactgaaaca ttctgaaaag aatcccaata aacactcttc tgtcaagttg cttctggtag
     5101 atgttttggt cacagtgagt tagaagtaac taatacttac tggctaccag cctaaccgtc
     5161 actcagtgtg tggcacggta gtgttaacta tgtgcttatt cctgacggta tgtacctgta
     5221 actttcatct tgcaacctga aactccacag tccttgagtc acttgaacga ccatagcaat
     5281 gccacagacg gaacgtccca agtcatagaa aatgtctatt ttcacagctg tagagggcag
     5341 aagcccaatt ggcaggtgcc tgcagttctg ggggctcttc attgcttggg gagaaataga
     5401 gaaactgttc tctattttca aaagatattt atttattttg tatgtatgta tgtatgaatg
     5461 catgtgtata tgtatgtctg tatgcatgca tgtatgtatg tatgcatgtg tgtattatgt
     5521 atgcatgtgt gtatgtatgt atatgtgtct gggtggcagt ggttatagtc ccatgaaggc
     5581 aagtgcttgt ggaggcctgg ggttttaggt gctctgaatc tagacctgtg agccacctga
     5641 cagagatgtt gaaactatac tcaagttctc tggaagaata tttgctccta atcactgagc
     5701 catctcgcta gtccatccac cgtattttgt gaggcagagt ctctcgctga agctagagct
     5761 tgctgattga gagactgtct agccaggcag caccagggat tttcctcact ctggtctcct
     5821 cagctgaatt ccctgggttt cagggatgct ctcagcatcg gcccctgggt ttttaacata
     5881 gattctggag atgccaagtc aggtcctcag gcttgcagag caagcacgtt accaagggaa
     5941 ccaattcctc agccctactg ctcctgtgag cttgactact ctaggtaccg tgggtaggtg
     6001 aattcgtaca atatttgctt ttgtacttgg cttattttta ttgtcataat gtcttcatgg
     6061 tgtgttattg tgtgacttgt gttaggattt tcttttcttt ttgaagataa ataatttaca
     6121 ttatatgtgg ggtccacact ttgcccacct ccagtggaca ctgggtagcc cctacctctt
     6181 agacagagga aatggtgtta cagcgaatgg cggcatgaag ataatataaa gatagaattc
     6241 ttttgcacac ttcattgaga ccttcttccc aagtgattct aggttgggtt atgttgatga
     6301 tcaatgccaa cttcagagct ggatcctgat gtctgcttaa gctgttatcc tcttctccat
     6361 agtaactcca tccctttcca cttcccacaa agcacagggc cgtttgttga cattctcacc
     6421 agggcctctt agttctcctt gctttgataa tggctgttct aatgggtgag aggtggggtt
     6481 tggtaatggt gctgttttcc tctccatgta accgcagatt tgctctcctt gttgaattct
     6541 aaatgctttt aaaatacact cttcttttgt gtgtgtattt at
//
