LOCUS       XM_039083507            4716 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dual specificity phosphatase 8
            (Dusp8), transcript variant X2, mRNA.
ACCESSION   XM_039083507
VERSION     XM_039083507.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083507.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4716
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4716
                     /gene="Dusp8"
                     /gene_synonym="Hb5; M3/6"
                     /note="dual specificity phosphatase 8; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 40 ESTs, 1 long SRA read, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 33 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361679"
                     /db_xref="RGD:1306425"
     CDS             412..2322
                     /gene="Dusp8"
                     /gene_synonym="Hb5; M3/6"
                     /codon_start=1
                     /product="dual specificity protein phosphatase 8 isoform
                     X1"
                     /protein_id="XP_038939435.1"
                     /db_xref="GeneID:361679"
                     /db_xref="RGD:1306425"
                     /translation="MAGDRLPRKVMDAKKLASLLRGGPGGPLVIDSRSFVEYNSCHVL
                     SSVNICCSKLVKRRLQQGKVTIAELIQPAARSQVDATEPQDVVVYDQSTRDASVLAAD
                     SFLSILLSKLDGCFDSVAILTGGFATFSSCFPGLCEGKPATLPSMSLSQPCLPVPSVG
                     LTRILPHLYLGSQKDVLNKDLMTQNGISYVLNASNSCPKPDFICESRFMRIPINDNYC
                     EKLLPWLDKSIEFIDKAKLSSCQVIVHCLAGISRSATIAIAYIMKTMGMSSDDAYRFV
                     KDRRPSISPNFNFLGQLLEYERSLKLLAALQSDGPHLGTPEPLMGPAAGIPLPRLPPS
                     TSESAATGSEAATAAKEGSPSAGGDALIPSTAPATSALQQGLRGLHLSSDRLQDTNRL
                     KRSFSLDIKSAYAPSRRPDFPGPPDPGEAPKLCKLDSPSGGTLGLPSPSPDSPDSVPE
                     CRPRPRRRRPPVSSPARSPAHGLALNFGDTARQTPRHGLSALSAPGLPGPGQPSGPGG
                     WVPPLDSPGTPSPDGPWCFSPEGAQGPGAVFSAFGRASAGAPGPGSGSSGGGGGSSSS
                     SSSSSSGDLRRRDVRTSWPEEPAADAQFKRRSCQMEFEEGMVEGRARGEELAALGKQT
                     SFSGSVEVIEVS"
ORIGIN      
        1 gacgcgcccc gcgcgcctct ccggcccttg ccccggctac gcgggccccc gacgggccca
       61 tgggtggcgg aacggagcgg gcgccctgag cgcggcaccg acgtcggggg caaccccagg
      121 gcaagcgaga gccagcatca agattatgag cttagagaac cttttctgga gatggattct
      181 gggaattggc catgcagcac tgtgtcaagg aagggaggtc tgagaggcct gggaaaagaa
      241 caaagccaag ctttgtaccc tagggtcccc agaagaggaa aatgcagagc tcagcaggac
      301 agaagttgag gaaggcacag gtctgggacc atgcactagg gtacccagaa cactgcaagg
      361 ccacgccctc ctcacttcag gggtcactct ccccactgct accaccccac catggctggg
      421 gatcggctcc cgaggaaggt gatggatgca aagaaactgg ccagcctgct gcgcggcggg
      481 cccgggggcc ctttggtcat cgacagtcgg tccttcgtgg agtataacag ctgccacgtg
      541 ctgagctctg tgaacatctg ctgttccaag ctggtgaaga ggcgccttca gcagggaaaa
      601 gtgaccattg ctgagctcat ccagcctgct gcgcgaagcc aggtggatgc cacagaacca
      661 caggatgtgg tggtgtatga ccagagcaca cgagatgcca gtgtgctggc agcagacagc
      721 ttcctgtcca tcctgctcag caagctggac ggctgcttcg acagtgtggc catcctcaca
      781 ggaggttttg ccacgttctc ctcctgcttc cctggcctct gtgagggcaa acctgccacc
      841 ctaccatcca tgagcctctc tcagccctgc ctgcctgtgc ccagtgtcgg cctgacccga
      901 atcctgcctc acctctacct gggctctcag aaagacgtct tgaacaagga tctgatgacc
      961 caaaatggaa taagctatgt cctcaatgcc agcaactcct gccctaaacc ggacttcatc
     1021 tgtgagagcc gtttcatgcg tatccccatc aatgacaact actgtgaaaa gctgctgccc
     1081 tggctggaca agtccattga gtttattgat aaagccaagc tgtccagctg ccaagtcatc
     1141 gttcactgtc tggctggcat ttctcgctct gccaccatcg ccatcgcgta catcatgaaa
     1201 accatgggca tgtcttctga cgacgcatac aggtttgtga aggatcggcg cccctccatc
     1261 tcgcccaact tcaacttcct gggccagttg ctggagtatg agaggagtct gaagctgctg
     1321 gctgccctgc agagtgatgg acctcacttg gggacccctg agcccctcat gggcccggca
     1381 gcaggcatcc cactgccccg gctgccacca tctacctcag agagcgctgc caccgggagc
     1441 gaggcagcca ctgcagccaa ggagggcagc cctagtgctg gaggggatgc tctgatcccc
     1501 agcacagctc cagcgaccag tgcactgcaa cagggcctgc gtggcctgca cctctcctct
     1561 gaccgcctcc aggacaccaa ccgcctcaag cgctccttct ccctggacat caagtcggcc
     1621 tatgcaccca gcaggaggcc cgactttccc ggcccacccg accccggtga agccccaaag
     1681 ctctgcaagc tggacagccc gtctgggggc acactgggcc tgccctcgcc cagccccgac
     1741 agcccggact ccgttccaga gtgccgccca cgaccccgcc ggcgacgtcc cccggtcagt
     1801 tcgccggccc gctcccccgc tcatggcctg gccctaaact ttggagacac ggcccggcag
     1861 actccgcggc acggcctctc ggccctgtcg gcgcccgggc tgcctggccc tggtcagccg
     1921 tctggccctg ggggctgggt gccgccactg gactccccag gcacaccgtc acccgacgga
     1981 ccctggtgct tcagccccga gggcgcgcag ggtccaggcg ctgtgttctc cgcctttggc
     2041 cgggcgagcg caggcgcacc tggacccggt agtggcagca gcggtggcgg cggcggcagc
     2101 agcagcagta gcagtagtag cagcagcggc gacctgcggc ggcgggatgt gcggaccagc
     2161 tggcccgagg agcctgctgc agatgcacag ttcaagaggc gcagctgcca gatggagttc
     2221 gaagagggca tggtggaggg gcgggcacgt ggcgaggagc tggcagccct gggcaagcaa
     2281 accagcttct ctggcagcgt ggaggtcatc gaagtatcgt gacccttcag gagtccctgt
     2341 gcccttgctc cagccaggcc aggtataaat atatattata tataaaacac acagaaaagg
     2401 taaatggttt tactgcaatt tttatcaaga agtaaatatt tcgatttttt tatttattta
     2461 agctagtgat ctggcaactg tgcggggcgg ccctaaagct ctgtttttac tgtctggtat
     2521 ttaaactgaa acaggtttct aagcaatatg aggccacctt caatcccaag ctgggttgac
     2581 aggcctgggc ccctcctggc ccctcccctc tggaaacatt actgaccttt caaagagctg
     2641 cccagctttc ctgcactttt tacataagaa aggggggagg gatgaaaaaa aaacagaaaa
     2701 caaacaaaca aaaaaaaatc aaaacacaaa aacccaaacc cttacttgcc acaaactgag
     2761 ccgcagaccc cttccattcc tttctctcct ctcctggtct ctcctctcct gtttctcctg
     2821 tcttgggctc tgcagcaaag ccataggtaa ggggatggac ggggaaaccc tagtgtccct
     2881 gcagaaggcc ccaccagcag tgtccccaca cctcagattg ccaagtctta ctggcataag
     2941 gatatcttct ctgcccttca ccccagggct gttccctggc aggtgttggt aggcactggg
     3001 ccaatggacc agagatttca aggagacttg gacaagtggg ttcctgaaag ccagatgagg
     3061 tagctcccaa ggcaaggatg gaggacctca ctcctgtgag agtgagaccg agtttcttag
     3121 aagggccctg gaggccattc agaggaagca cttctctttc ctttgcaggt gctcctgccc
     3181 attgggaacc ccagtagact tccccagcat gtactggggc agtgcccagt gctagtagga
     3241 ggagctaagc tagctggggc tggcaggggc tatctctgct ggtcagaggg gagctctggg
     3301 cccagtagga atgggggtag attcaagctc tcatcatggg ctcttcctgc cacaggtagg
     3361 gcctggaatt cgagtgcacc tgcgggttga gtgcctctga agcaggtgga gtaaagcacc
     3421 caccaagcgc ttaggcttct aggaagtgga aatcctcagc tttaggagaa ctgtctccaa
     3481 gcagagaaag accccaccta aggacagatg cttggaaagt ccccatgact gccccatccc
     3541 cacaagggct tctcaggaga gagtccccta tgatcccctt cctagggtac tttccccagg
     3601 gtcttcaaga tgatatgcta gcatccaccc aaggtggctt tttctaggct cagagccaat
     3661 ctaggagaag gacaaggaga aaagtgccag ccacccttgc tgaatatcct cttggactat
     3721 tggggaccta aagttttgag gcagaataga ggttcttgcc ctcacatgtc ttcaagtctt
     3781 ggagtgggtc tgtcctttga ggaagaaacc agggcttgtt aacaggtagc tggggcagga
     3841 cagagtcttg gaaaagacct agggtgggcc ctttctaccc cacctctctt gctgtgtcct
     3901 cctgtctctt cttcttttga cctgctccct atgttcctgt cacccttctt cttaaacaaa
     3961 agtcctgccc cagttctctt gattcccacc tatcctgatc cctgagaaaa taagctattg
     4021 ttgtatttgc aatctatgga ttagaggttt aagtatttat tattattggt taattattat
     4081 tataattatt attaattatg taaatttgcc tcctgtctgt cattgaattt ctgaggtgac
     4141 cctgggtgtg gagggtgcac tggcttcccc ctccatgccc ccactctact gctgtccagg
     4201 agacagtggt atggggccac cagttggacc ctaaagctcc ccctggggtc tggtccctcc
     4261 cctctcttga tggagatatg gcatctatcc tggacacttg gggcccatca gcctcagtct
     4321 gtctctgttc tcacttacgc atgactctgg tctccccaaa gtgagcagaa agatggagga
     4381 ggtctcagct cccccctcct ttgtgttggg ggaggtggag cacaggcttt ccctggtggc
     4441 ttttcaccca ctgtccacgg tgtggagagt atatggttct ctcttgctct cccacccctc
     4501 ttatctggtc actgccggca ctggaatggc ccagaatgca cctggccgcc tcctgttgtt
     4561 cagtacagga gaggtccctt gcccaaggct tccggtccct gaggaccagg gtgccagctt
     4621 cccccttggg accttgcccc atgaggccgc actttcctgt ccctcctttt gtatttaaaa
     4681 caatgtgttg taataaatca tgagaaggat gttttc
//
