LOCUS       XM_039078252            2422 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dual specificity phosphatase 6
            (Dusp6), transcript variant X1, mRNA.
ACCESSION   XM_039078252
VERSION     XM_039078252.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078252.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2422
                     /gene="Dusp6"
                     /gene_synonym="Mkp3"
                     /note="dual specificity phosphatase 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 67 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 98 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116663"
                     /db_xref="RGD:70978"
     CDS             542..1249
                     /gene="Dusp6"
                     /gene_synonym="Mkp3"
                     /codon_start=1
                     /product="dual specificity protein phosphatase 6 isoform
                     X1"
                     /protein_id="XP_038934180.1"
                     /db_xref="GeneID:116663"
                     /db_xref="RGD:70978"
                     /translation="MIDTLRPVPFASEMAISKTVAWLNEQLELGNEQLLLMDCRPQEL
                     YESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRCEDRDRFTRRCGTDTVVLYDENS
                     SDWNENTGGESVLGLLLKKLKDEGCRAFYLEDEARGKNCGVLVHCLAGISRSVTVTVA
                     YLMQKLNLSMNDAYDIVKMKKSNISPNFNFMGQLLDFERTLGLSSPCDNRVPAQQLYF
                     TAPSNQNVYQVDSLQST"
ORIGIN      
        1 gttccagccg gcccgtcccc acggcaacag ccccttccgc agcgcgctca ttggctggcc
       61 gagagaatgt atccattgag acgctggctg tttgtatcca ttgaggagct gcctggcaca
      121 gggggtgtgc tctcgcggag tcctagggac tgcgagcaaa cccagtcttg aataatccgg
      181 cgagaaacac ggggttggat ctgaggtgca gcctcagagg gattaggagc tgctagactt
      241 ttttcttttt tcctttttct cctctcagtg gcacggagtc cgaattaatt ggatttcatt
      301 cactgggtag gaacaaaact gggcactttc attcagagag attcattgac tctgagagtg
      361 atctggtgca gagggaccac cggcttggct tctgtcgcct tccctaaccg ctagcttcgg
      421 cttgggaaag gccgaatcaa acccggctcc gagagccgga gcttctcacg gcgtgcttgg
      481 cctatgcctg cctcgagggg cgtctgctag gcaccccgcc ttctcctgca gctcgacccc
      541 catgatagat acgctcagac ccgtgccctt cgcgtcggaa atggcgatca gcaagacggt
      601 ggcgtggctc aacgagcagc tggagctggg caacgaacag ctgctgctga tggactgccg
      661 accgcaggag ctgtacgagt cgtcgcacat cgaatctgcc atcaacgtgg ccatcccggg
      721 catcatgctg cggcgtctgc agaagggcaa cctgccggtg cgcgcgctat tcacgcgctg
      781 cgaggaccgg gaccgcttta ccaggcgctg cggcaccgac accgtggtgc tctacgacga
      841 gaacagcagc gactggaatg agaacacagg tggagagtcg gtcctcgggc tgctgctcaa
      901 gaaactcaaa gacgagggct gccgggcgtt ctaccttgaa gatgaagccc gaggcaaaaa
      961 ctgtggtgtc ctggtgcatt gcttggcggg catcagccgc tccgtcacgg tgacagtggc
     1021 ttaccttatg cagaagctca acttgtccat gaacgatgct tatgacattg tcaaaatgaa
     1081 gaagtccaac atctctccca acttcaactt catgggccag ctgcttgact ttgaaaggac
     1141 cctgggactc agcagcccct gtgacaatcg tgtccccgca cagcagctct acttcaccgc
     1201 gccctccaac cagaatgtct accaagtgga ctccctgcaa tctacgtgaa aggcacccac
     1261 ctttcctagc cgggagtgtc tcattccttc agtttctctt gggcagcatc gaccaggctg
     1321 ctttctttgt gtgtggcccc aggtgtcaaa aatgtcacca gctgtctgta ttagacaagg
     1381 ttgccaagtg caaaattggt tattacggag ggagagattt gctccattca ttgttttttg
     1441 gaaggacagg gtatgctgtc tagatccagg caataggttt gcttctgtac cccagcctac
     1501 ccaagcaggg actggacctc catccagata gagggtagga caaaggagcc ggggatagga
     1561 gcatgtgttc cttagggcca catatggctg tttcctgttg catctggaac caactatatt
     1621 gtcttcagtg aagactgatt caactttgcg tatagtggag ccaaagagat tttagctctg
     1681 tatttgtggt atcggttttg aaaacaaaag aactgatcct ttaatttgat tattgtaaat
     1741 atttgatctt cacttgagag tgtttgtttg gcttgtgttt ggtttttaat ctttgggttt
     1801 aaacgagatc caaagggaga aagagcagta tgccacttct tagaacaaaa aaaaaaaaat
     1861 ggttcttttc taatccaaag ggtatatttg cagcatgctt gaccttactg taccaattct
     1921 ggttttcacg gatattatga tcactaagac tttgttatga tgaggtcttc agtctctttc
     1981 atgtatcttc cttgtaactt tattttttct cttaatgtag ttttgactct gccttacctt
     2041 tgtaaatatt tggcttacgt tgtctcaagg ggtattttcg aaagacacca aaattgtgga
     2101 ttcacttttt tttttttttt ttttagtaac ttcagctgtg cttaaacagc ctattacctc
     2161 tgtacaaaat tcttcaggga gtgtcacctc aaatgcaata cgttgggttg gtctctttcc
     2221 tttaaaaaaa aaatatacaa aactggaagt gtgtgtatgt atgtatgtga gcatgctcgc
     2281 ccattcaacg ggtgggatgc gacaggttgt gaggaaggga aagttcactt gctccatgat
     2341 gttcgtggtg taaagttttg agctggaatt tattataaga atgtaaaacc ttaaattatt
     2401 aataaataac tattttggct at
//
