LOCUS       NM_001135803            1808 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus dihydrouridine synthase 4-like (Dus4l), mRNA.
ACCESSION   NM_001135803 XM_001076117 XM_006239993 XM_345654
VERSION     NM_001135803.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000006.1.
            
            On or before Oct 1, 2021 this sequence version replaced
            XM_006239993.4, NM_001135803.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1688580.1,
                                           SRR26360181.736566.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               JAXUCZ010000006.1  53969912-53970050   c
            140-278             JAXUCZ010000006.1  53967429-53967567   c
            279-400             JAXUCZ010000006.1  53963951-53964072   c
            401-518             JAXUCZ010000006.1  53961621-53961738   c
            519-641             JAXUCZ010000006.1  53958092-53958214   c
            642-868             JAXUCZ010000006.1  53957190-53957416   c
            869-1808            JAXUCZ010000006.1  53955609-53956548   c
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..1808
                     /gene="Dus4l"
                     /gene_synonym="RGD1311445"
                     /note="dihydrouridine synthase 4-like"
                     /db_xref="GeneID:366593"
                     /db_xref="RGD:1311445"
     exon            1..139
                     /gene="Dus4l"
                     /gene_synonym="RGD1311445"
                     /inference="alignment:Splign:2.1.0"
     exon            140..278
                     /gene="Dus4l"
                     /gene_synonym="RGD1311445"
                     /inference="alignment:Splign:2.1.0"
     CDS             163..1128
                     /gene="Dus4l"
                     /gene_synonym="RGD1311445"
                     /codon_start=1
                     /product="tRNA-dihydrouridine(20a/20b) synthase
                     [NAD(P)+]-like"
                     /protein_id="NP_001129275.1"
                     /db_xref="GeneID:366593"
                     /db_xref="RGD:1311445"
                     /translation="MRSDSIPTTICQERKKDPVEMFHSGQLVKVCAPMVRYSKLAFRT
                     LVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAANDARLLSDAALI
                     VCPYASGIDINCGCPQRWAMADGYGACLINKPELVLDMVRQVRNRVENPRFSVSIKIR
                     IHDDLARTIDLCRKVEATGVSWITVHGRTVEERHQPVHYDAIKMIKENVSIPIVANGD
                     IRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGYEETPLKCVWDWVDIALELGTPFM
                     CFHQHLMYMMEKITSRQEKRVFNALSSTSAVLDYLTDHYGDDSTF"
     exon            279..400
                     /gene="Dus4l"
                     /gene_synonym="RGD1311445"
                     /inference="alignment:Splign:2.1.0"
     exon            401..518
                     /gene="Dus4l"
                     /gene_synonym="RGD1311445"
                     /inference="alignment:Splign:2.1.0"
     exon            519..641
                     /gene="Dus4l"
                     /gene_synonym="RGD1311445"
                     /inference="alignment:Splign:2.1.0"
     exon            642..868
                     /gene="Dus4l"
                     /gene_synonym="RGD1311445"
                     /inference="alignment:Splign:2.1.0"
     exon            869..1808
                     /gene="Dus4l"
                     /gene_synonym="RGD1311445"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgaagcccca cggcctgcca ccgagactgt gctgtctcca ccttccatgt tggcaagtac
       61 cgggttgatg acgtcttgcg atcgccccgc cctccaagtg acgcagaatc aaggcgccgc
      121 cccacctggc cagcctaggt tttgaaacca acttacatac acatgaggag tgactccata
      181 ccaaccacga tatgtcaaga aagaaaaaaa gacccagtag aaatgtttca ttctggacag
      241 ctggtaaaag tctgtgcccc gatggttcga tattcaaagt tggcttttag aacattagta
      301 agaaaatact cttgtgacct atgttataca ccaatgatag tggctgctga ttttgtcaga
      361 tctgtaaaag ccagagacag tgaattcacc acaaaccaag gtgattgccc gttgattgtt
      421 cagtttgctg ctaatgatgc aagactttta tccgatgctg ctctgatagt ctgcccctat
      481 gcaagtggaa tagatattaa ctgtggttgc cctcagaggt gggccatggc agacggttat
      541 ggagcttgct tgatcaacaa gccagagctc gttctcgata tggtgagaca agtgagaaat
      601 cgagtggaaa acccaaggtt ttcagtttcc attaagataa ggatccatga tgacctggca
      661 agaaccatag atctctgccg gaaggttgaa gccacaggag tgtcctggat tacagtccat
      721 ggaagaacag ttgaagaaag acaccaacca gtccactatg atgccattaa aatgataaag
      781 gaaaatgtgt ctatacccat agttgctaac ggagacataa gaagcttgaa agaagcagaa
      841 aatgtgtggc agatgactgg gacagatggt gtaatggttg caagaggact tttagcaaac
      901 ccagctatgt ttgctgggta tgaagaaacc ccactgaaat gtgtctggga ctgggttgac
      961 atcgctcttg aacttggaac tcctttcatg tgtttccatc agcatctaat gtatatgatg
     1021 gaaaagataa catcaaggca ggaaaagaga gtgtttaatg ctttgtcaag cacgtcagca
     1081 gtcctggact accttacaga ccattatggt gatgattcaa ctttctaagt cattgtagta
     1141 tgtatttttt acctacatgg aaccagatga ggttacatcc tcatatttct tttaagtcta
     1201 tggcttttaa tatcagtata acagcaatca ctggggccag acatgaaggc ccatgtctct
     1261 tatccaacta ctcagaaagc tgaatgaaga tgtttggaaa ttctaggcca gcaaaactct
     1321 atctgaaaga acaaatggaa cttttccata actgtaagaa ctcagtcctg gggctgtaga
     1381 gatggctcac cagttaaagc cttggctgct cttccagagg acctggatcc aatttccagc
     1441 tcccaagtgg ctgctcacta ctgtctgtaa ctccatttcc aggggatccc acatgctctt
     1501 caggcctcct cagacaccag ctaagcatat ggtgtacaga caaacatgca agcagaacat
     1561 tcatacacat aaaactaaca acaacaaagt cagccctgta cccttcctca tgggttccac
     1621 ttcagtagat cgtgagcaga cccagaagtt ttaaagaact caggaccttc caacatccaa
     1681 tagtcccaga tcaaatattg gaaaactctg cttctaatct ttatgggtgt agtggatggg
     1741 tgggggtgga agttttacta aaggtattct gtttttaagt gttttaaata aaacttttct
     1801 aacagcaa
//
