LOCUS       NM_001034923            2061 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus dihydrouridine synthase 3-like (Dus3l), mRNA.
ACCESSION   NM_001034923 XM_217318
VERSION     NM_001034923.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2061)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC105780.1.
            
            On Oct 21, 2005 this sequence version replaced XM_217318.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC105780.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2061
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q11"
     gene            1..2061
                     /gene="Dus3l"
                     /note="dihydrouridine synthase 3-like"
                     /db_xref="GeneID:301122"
                     /db_xref="RGD:1563228"
     exon            1..142
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     CDS             48..1970
                     /gene="Dus3l"
                     /EC_number="1.3.1.89"
                     /note="mRNA-dihydrouridine synthase DUS3L"
                     /codon_start=1
                     /product="tRNA-dihydrouridine(47) synthase
                     [NAD(P)(+)]-like"
                     /protein_id="NP_001030095.1"
                     /db_xref="GeneID:301122"
                     /db_xref="RGD:1563228"
                     /translation="MAEVAEVAAESGGGGDSGVGACERGVAPIKAQYRTTKERFHEYL
                     DADKQEGACQETPTEGPAEPEAKRIRLEDGQENGKTEVAVESHERQVPKRARGQNKSR
                     PHMKPAHYDKERLCPSLLQESATPCAFGDRCRFLHDVGRYLETKPADLGPHCVLFNTF
                     GRCPYSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVRNGLDRALQQQLRKRQVCFE
                     RAEQALSHLTQGPMPTIAPESTVATLTPKHSSCHVQLDNVGGDGARQGSPVPTCGPLT
                     DEDVVRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLLQ
                     GQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVY
                     KKGGGCALMNRSAKFQQIVRGMNEVLDVPLTVKMRTGVQERVSLAHRLLPELRNWGVA
                     LVTLHGRSREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFEDANCAMQTGVAGIM
                     VARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLL
                     EWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQQAADWIRISEMLLGPV
                     PPGFVFLPKHKANAYK"
     exon            143..410
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            411..917
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            918..959
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            960..1112
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1229
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1230..1295
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1296..1406
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1407..1503
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1504..1579
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1580..1768
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1769..1897
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1898..2003
                     /gene="Dus3l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggaagact ttcctgccac actccagagc cagtgcgagg ggcgtcgatg gcggaggttg
       61 cggaggtagc agctgagagc ggtggtggcg gtgactccgg agttggcgcg tgcgaacggg
      121 gggtggcgcc cattaaagct cagtaccgca ccaccaaaga aaggttccac gaatacctgg
      181 atgcagacaa gcaggagggt gcgtgccagg aaacgcctac agagggccca gctgaaccgg
      241 aggccaaaag aatccgcttg gaagatgggc aggagaatgg gaagacagag gtggcagttg
      301 agtcccatga aaggcaggtg cccaagaggg cccggggcca aaacaaaagc cggccccaca
      361 tgaagccagc acactatgac aaggagaggc tctgcccatc cctccttcag gagtcggcca
      421 ctccatgtgc atttggagac cgttgccgct tcctgcatga tgtggggcgc tacctggaga
      481 ccaaaccagc agacctgggc ccccactgcg tgctcttcaa caccttcggc cggtgccctt
      541 acagcatgac ctgtcgtttt gctggggcac acttgggacc tgagggtcag aacctggtgc
      601 aggaggaggt ggtggcccgc tgtgcacagc tcccttcggt gcgaaatggc ctcgacaggg
      661 ctctgcagca gcagctgcgg aagcgccaag tttgctttga gcgagctgag caggccctga
      721 gccaccttac ccagggcccc atgcccacga ttgcccctga gagcactgtg gccacattga
      781 ccccaaagca cagcagctgc catgtccagc tagacaacgt aggaggggac ggtgccaggc
      841 agggcagccc tgtgcccacc tgcggcccct tgaccgacga ggatgtggtc cggctgcggc
      901 cctgtgagaa gaagcggcta gacatcagcg gaaagctgta cctggctcct ttaaccacgt
      961 gtggaaacct accctttcgc cgtatctgca agcgcttcgg tgcagatgtg acctgcggtg
     1021 agatggccat gtgcacaaac ctgctccagg gacagatgtc tgagtgggct ttgctcaagc
     1081 gccacccctg cgaggacatc ttcggggttc agctggaggg cgcattccct gacaccatga
     1141 ccaagtgtgc tgagctgctc aaccgcacga ttgacgtgga cttcgtggac atcaacgtgg
     1201 gctgccctat cgacctcgtc tataagaagg gtggtggctg tgcactcatg aatcgctcag
     1261 ccaagttcca acagattgtg cggggcatga atgaggtgtt ggatgtaccc ttgacggtga
     1321 agatgcgcac gggtgttcag gagcgtgtga gcctggcaca ccgactgctg cctgaactgc
     1381 ggaactgggg tgttgcactg gtcacactcc atggccgctc cagggaacag cgctacacca
     1441 ggctggccga ctggccctac atcgaacagt gtgccaaggt ggccagcccc atgcccctgt
     1501 ttggaaatgg agacatcctt tcgtttgagg acgccaactg tgccatgcag acaggggttg
     1561 ctgggatcat ggttgcccgt ggcgccttgc tcaagccctg gctgttcact gagatcaaag
     1621 aacagagaca ctgggacatc tcatcctctg agcgcctgga catcttgaga gacttcacac
     1681 actatggcct ggaacactgg ggctctgaca cacagggtgt ggaacggacc cggcgcttcc
     1741 ttcttgagtg gctctccttt ctttgcaggt atgtgcccgt gggcctgctg gaacgactgc
     1801 cacagaggat caatgaaagg ccaccctact acttaggccg tgactacctg gagacactca
     1861 tggccagcca gcaggctgca gactggattc gaatcagtga gatgctgctt ggaccagttc
     1921 cacctggctt cgtcttcctg cccaagcaca aagccaatgc ctacaagtag ctaacagaga
     1981 caataaattt tattcttgta gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2041 aaaaaaaaaa aaaaaaaaaa a
//
