LOCUS       NM_172018               1755 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus dihydrouridine synthase 1-like (Dus1l), mRNA.
ACCESSION   NM_172018 XM_017597002
VERSION     NM_172018.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1755)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Nov 24, 2020 this sequence version replaced
            XM_017597002.1, NM_172018.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY327510.1, AY327509.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                JAXUCZ010000010.1  106560823-106560911 c
            90-336              JAXUCZ010000010.1  106559950-106560196 c
            337-445             JAXUCZ010000010.1  106559334-106559442 c
            446-496             JAXUCZ010000010.1  106558800-106558850 c
            497-609             JAXUCZ010000010.1  106558370-106558482 c
            610-692             JAXUCZ010000010.1  106557581-106557663 c
            693-796             JAXUCZ010000010.1  106557238-106557341 c
            797-941             JAXUCZ010000010.1  106556897-106557041 c
            942-1038            JAXUCZ010000010.1  106556571-106556667 c
            1039-1127           JAXUCZ010000010.1  106556397-106556485 c
            1128-1273           JAXUCZ010000010.1  106555755-106555900 c
            1274-1311           JAXUCZ010000010.1  106554499-106554536 c
            1312-1387           JAXUCZ010000010.1  106554295-106554370 c
            1388-1755           JAXUCZ010000010.1  106553841-106554208 c
FEATURES             Location/Qualifiers
     source          1..1755
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.3"
     gene            1..1755
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /note="dihydrouridine synthase 1-like"
                     /db_xref="GeneID:246185"
                     /db_xref="RGD:708389"
     exon            1..89
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            90..336
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..1527
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /EC_number="1.3.1.88"
                     /note="liver regeneration-related protein LRRG08/LRRG09;
                     embryo-related protein"
                     /codon_start=1
                     /product="tRNA-dihydrouridine(16/17) synthase
                     [NAD(P)(+)]-like"
                     /protein_id="NP_742015.2"
                     /db_xref="GeneID:246185"
                     /db_xref="RGD:708389"
                     /translation="MPKLQGFEFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLC
                     YTPMLHAQVFVRDANYRKENLYCDVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAI
                     DLNLGCPQMIAKRGRYGAFLQEEWDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRY
                     AQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRKAVGIPVFANGNIRCLQDVE
                     RCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELADEYLDIVRQHPCPLSYVRAHLFK
                     LWHHTLQVHQQLREELAKVKTLEGVAAVSQALKLRCQEDMARQQEGVRPADNLPAFHW
                     ICQPYIRPGPKEGSKENSSGRSKRALEEEEGSMEGLSKNKLKKQLRNPHKTFDPSLKP
                     KYAKCDQCGNPKGNRCVFNLCRGCCKKRAFRETADCPGHGLLFKTKLEKSLAWKGIQP
                     GLQEAQQVRPVTPSGFSEVMGSALA"
     exon            337..445
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            446..496
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            497..609
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            610..692
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            693..796
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            797..941
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            942..1038
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1127
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            1128..1273
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..1311
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            1312..1387
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
     exon            1388..1755
                     /gene="Dus1l"
                     /gene_synonym="Pp3111; x85"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcacttccg gcggtggtgc gctgagactg agccatagtg cttggcggct accgccgcct
       61 tcctgcgggt cctgctggcg gcgcagcggt gtggaaagga tgcccaaact gcagggtttt
      121 gagttttgga gccgcaccct tgggggtgcc cgacatgtgg tggcacccat ggtggaccag
      181 agtgagctag cttggagact gctaagccgc cgccatggag cccagctatg ctacacccct
      241 atgctacatg cccaggtctt cgttagagat gctaactatc ggaaagagaa cctatattgt
      301 gatgtgtgcc ctgaggacag gcccctcatt gtgcagtttt gtgccaacga cccagaggtg
      361 tttgtccagg cagctctcct agcacaagat tactgtgatg ccattgacct gaacttgggc
      421 tgcccacaga tgatagccaa gagaggtcgc tatggcgctt ttctgcagga ggagtgggat
      481 cttcttcaaa gaatgattct gttggctcat gagcgactct ctgttcctgt cacgtgcaaa
      541 attcgtgtct tcccagagat tgacaagaca gtgagatacg cccagatgct ggagaaggct
      601 ggctgtcagc tcctgactgt gcatgggcgc accaaggagc agaaggggcc catggcagga
      661 acagcctcgt gggagcacat caaggcagtt cggaaggcgg tgggaatccc tgtgtttgcc
      721 aatgggaaca tccggtgcct gcaggatgtg gagcgatgca tccaggacac aggcgtgcag
      781 ggggtcatga gtgcagaggg gaacctgcac aaccctgccc tctttgaggg ccggagccct
      841 gctgtgtggg agctggctga tgagtacctg gacattgtac ggcagcaccc ttgtccactc
      901 tcctacgtcc gggcccatct cttcaagctg tggcaccaca cgctacaggt acatcagcag
      961 cttcgggagg agctggccaa agtgaagacc ctggaaggcg tggctgctgt gagccaggcg
     1021 ctgaagcttc gctgtcagga ggacatggcc aggcagcaag aaggagtgag gccagctgac
     1081 aacttacctg ctttccactg gatctgccag ccttacatcc gaccaggacc taaggaaggg
     1141 agcaaggaga atagtagtgg tcgaagcaag cgggctctgg aggaagaaga gggcagcatg
     1201 gagggcttgt ccaagaataa gctgaagaaa caactgagga accctcacaa aacatttgat
     1261 ccttccctga aacccaaata tgcaaagtgt gaccaatgtg gaaatccaaa gggcaataga
     1321 tgtgtgttta atctgtgccg tggctgctgc aagaagcgag ctttcaggga gaccgcagac
     1381 tgcccaggtc atggattgct ttttaagacc aaattagaga agtctctggc ctggaaaggg
     1441 atccagcctg gactgcagga agctcagcag gtgaggcctg taacaccaag tggtttctct
     1501 gaagtcatgg gtagtgccct agcctgaaag ccagcaagaa tcatctccac ccaggacagc
     1561 cactgaagcc tggacattct ttaaggaaat gcctttactc agggaatctc ctctttgaca
     1621 cagaagaaca tgttgatgtc tgctggtggg gaccggcaat gttacaccaa gggtagtctt
     1681 ggttggactt gccctgttcc cacatgtgtt ttcagaactc aacaataaac catttcagag
     1741 ccgcatttgc agaga
//
