LOCUS       XM_039104978            1363 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dual oxidase maturation factor 1
            (Duoxa1), transcript variant X3, mRNA.
ACCESSION   XM_039104978
VERSION     XM_039104978.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104978.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1363
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1363
                     /gene="Duoxa1"
                     /gene_synonym="RGD1306601"
                     /note="dual oxidase maturation factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 2 long SRA reads, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:311374"
                     /db_xref="RGD:1306601"
     CDS             161..1183
                     /gene="Duoxa1"
                     /gene_synonym="RGD1306601"
                     /codon_start=1
                     /product="dual oxidase maturation factor 1 isoform X2"
                     /protein_id="XP_038960906.1"
                     /db_xref="GeneID:311374"
                     /db_xref="RGD:1306601"
                     /translation="MAALGHTLPFYTGPKPTFPMDTTLAVIITIFLTALVTFIIILPG
                     IRGKTRLFWLLRVVTSLFIGAVILAVNFSSEWSVGHINTNTTYKAFSPKRVSVHVGLQ
                     IGLGGLNITLTGTPVQQLNETINYNEEFTWRLGKSYAEEYAKALEKGLPDPVLYLAEK
                     FAPRSPCGLYNQYRLAGHYASAMLWVAFLCWLLANVMLSMPVLVYGGHMLLATGLFQL
                     LALFFFSMTTSLMSCPLRLGTAVLYTHHGPAFWITLATGLLCILLGLVMAVAHRMQPH
                     RLKALFNLSSEDPMLEWGSEEGGLLSPHYRSIAESPETQDIPMSEASSETCLKEECLK
                     ESDCSL"
ORIGIN      
        1 ggaccggagc atgaaaggac gtctacgtct ggacccggtt cctgacctat tcccacgacc
       61 aggatcgctt gaaactcgat cgaggtgagg ttccaaaaga cagacgcaga attcgagccc
      121 tctggagctg ccatcaacac ccctgtgtac ctccaccaag atggctgctc ttggacacac
      181 gctgcccttc tacactggcc ccaagccaac cttcccaatg gacaccactt tagctgttat
      241 tatcacaatc ttcctgactg ccctggtcac cttcatcatc atcctgcctg gcatccgtgg
      301 gaagacaagg ctgttctggc tgctacgggt ggtgaccagc ttattcatcg gggctgtgat
      361 cctggctgtg aatttcagtt ctgagtggtc tgtgggccat atcaacacca acacaaccta
      421 caaagccttc agtcccaagc gggtcagcgt gcacgtggga ctgcagattg ggctcggagg
      481 actcaacatc accctcacag ggaccccagt gcagcagctg aatgaaacca tcaactacaa
      541 tgaggagttc acatggcgcc tgggcaagag ctatgcagag gagtatgcca aggccttgga
      601 gaagggcctt ccagacccgg tgctatacct ggctgagaag tttgcccctc gaagcccttg
      661 tggcctgtac aaccagtacc gcctggcagg acactacgcc tcagccatgc tgtgggtagc
      721 attcctctgc tggctgctgg ccaatgtgat gctgtctatg ccagtgctgg tttatggtgg
      781 ccacatgctg ctggccactg gcctcttcca gctgttggca ctgttcttct tctccatgac
      841 cacgtcactc atgtcctgcc cgctgcgctt gggcactgct gtactgtaca ctcaccatgg
      901 gcctgctttc tggatcacat tagccacagg actgctgtgc attctgcttg gcctggtcat
      961 ggcagtggcc cacaggatgc aacctcacag actgaaggct cttttcaacc tgagctcaga
     1021 ggaccccatg ttggagtggg gctctgaaga agggggactc ctgagccccc actaccggtc
     1081 catagctgag agtccggaga ctcaggacat tcccatgtca gaggcttcct ctgagacgtg
     1141 tcttaaagag gaatgcctca aagagtccga ctgttccctg taatgctctt ctggtggata
     1201 ctgagtttcc agactggctg caggcatcac tggagcccac acaaaaccag cagaactgcc
     1261 caggaagtgg gtttgggttg tgtcatgtgc tccaatttgt tgatgtaaca gagcagggag
     1321 acacaaccta ctaatgcaaa aaataaatga acaaaagtcc caa
//
