LOCUS       XM_039089884            4288 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus deltex E3 ubiquitin ligase 1 (Dtx1),
            transcript variant X2, mRNA.
ACCESSION   XM_039089884
VERSION     XM_039089884.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089884.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4288
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4288
                     /gene="Dtx1"
                     /note="deltex E3 ubiquitin ligase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 16
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 43 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:687424"
                     /db_xref="RGD:1585380"
     CDS             1364..3259
                     /gene="Dtx1"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase DTX1 isoform X1"
                     /protein_id="XP_038945812.1"
                     /db_xref="GeneID:687424"
                     /db_xref="RGD:1585380"
                     /translation="MSRPGQGVMVPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATV
                     CHHIENVLKEDARGSVVLGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSA
                     PGKGIVWEWENDGGAWTAYDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMN
                     RQTRRRRRLRRRLDLAYPLTVGSIPKSQSWPVGASSGQPCSCQQCLLVNSTRAASNAI
                     LASQRRKAPIAPAAPPAPPPPPPPLPPGGPPSALVVRPSATFAGAALWAAPAAGPTEP
                     APPPGVPPRSPSAPNGAPTPGQNNLSRPGPQRSTSVSARASIPPGVPALPVKNLNGTG
                     PVHPALAGMTGILLCAAGLPVCLTRAPKPILHPPPVSKSDVKPVPGVPGVCRKTKKKH
                     LKKSKNPEDVVRRYMQKVKNPPDEDCTICMERLVTASGYEGVLRNKSVRPELVGRLGR
                     CGHMYHLLCLVAMYSNGNKVGHKDGSLQCPTCKAIYGEKTGTQPPGKMEFHLIPHSLP
                     GFADTQTIRIVYDIPTGIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLRLLITAW
                     ERRLIFTIGTSNTTGESDTVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELTAQGV
                     SEAMAKA"
ORIGIN      
        1 ccccgccccg aggccgcctc cacccgcggg atcccagcga cgcgtccgac gcgtccgcgc
       61 gccaggacta ctgcgtcctc ctgtctgtct gtccggcagc gggcgaggtc cgggctgggg
      121 caaaacggtg ccctccttcc ctcccaggag cccgcgggga aagagccaga gccgggagat
      181 cacggtgagc acgcagcgca gagaccccaa atccctggct ccagaagacc catgggcaga
      241 tgccaccggg cagggacata acgacctgca gctctttcgc ccccggggac gccacccctg
      301 aggaaaccta ggtcgcagct gcacccggca tcctccatcc atctcgacat tccgcatctt
      361 gagctcgaat ccctgcatcc cacatccttc attctgcatc cccgaatcct gcatccccac
      421 atcccgcgtc cctgcatccc acaccgcagc ccccggtagc gcgcggcctg gggcggggga
      481 cgcgctccaa ccgagcacgg gtcactgcgg gtgacagtct ggggtctggt gcctgctctt
      541 ctccgggcac cccagggact gcagggcacc gaccctcgag cctccctgcc gcccccccac
      601 cggcgcccca ttgttctctg ccgctgctcc taggaggggg agggggctgc tctcttctta
      661 aagggccctc tccccttctt gtcgcccctg caggtcgcga acaccagtgg ggtggggcgt
      721 gcccccggcc cccgcccctc ccagggtccc ccagctgcag ctccggagcc gcgatcccca
      781 cgctccgccc ccttccctgg gagatctgcg accactcagg ccgaccagga gaggggacag
      841 gggtgcaggg gtgcaggggt gcagggagcc ccgtcgggag gggcggaccc gagtcaccct
      901 gaagcgaggc acgggatctg aaaagcagag ctgagcgcgc agggagcagc aggctggggc
      961 cagggcctcc cgggtgacaa ggccctgcgt ggcggaccga aggaacggga acgaagcagg
     1021 gaaaggccga acctagaggg gcaagcgcct cctcactcct gcacctgcac cgagaggact
     1081 aaggaattga gaacatgtcc cccacctagg acagacattg ccttctgcgc accgctgtgt
     1141 gcaacagctg cgctctgcgg gaaggggtcc tcgcagcgtc tggatggcca cccatccccc
     1201 taacccaggc ctctaggcct tggagaggag cccagctgga aaagaggcca cactcctcgc
     1261 ctcccgccct ggagagggag gacgaagctt ccccggtgct ccgaggccca ggaggagctg
     1321 ggccagcaac agtggggacc tggccccgca agcgtcagcg gccatgtcac ggccaggcca
     1381 aggtgtgatg gtgccggtga acgggctggg cttcccgccg cagaacgtag cccgggtggt
     1441 ggtgtgggag tggctcaacg agcacagccg ctggcgaccc tacacggcca ccgtgtgcca
     1501 ccacatcgag aatgttctta aggaggatgc ccggggctct gtggtccttg gccaggtgga
     1561 cgcccagctg gtgccctaca tcatcgacct acaatccatg catcagttcc ggcaagacac
     1621 aggtaccatg cggccagtga gacgcaactt ctacgacccg tcgtcggcgc cgggcaaggg
     1681 catcgtgtgg gagtgggaga acgacggcgg ggcgtggacg gcctacgaca tggacatctg
     1741 tatcaccatc cagaacgcgt acgagaagca gcacccgtgg ctcgacctct catcgctcgg
     1801 cttctgctac ctcatctact tcaacagcat gtcccagatg aaccgccaga cgcgccgccg
     1861 ccgccgcctg cgccgtcgcc tggacctggc ttacccgctc acggttggct ccattcccaa
     1921 gtcgcagtcc tggcccgtag gagccagctc gggtcagccc tgctcctgtc agcagtgcct
     1981 gctggtcaac agcacgcgcg ccgcctccaa tgccatcctg gcctcacagc gccgcaaggc
     2041 gcccattgcg ccagccgcgc ctccagcgcc cccaccgccc ccgccgccgc tgccacccgg
     2101 agggcctccg agtgcgctcg ttgtgcgccc cagtgccacc ttcgccgggg ccgcgctctg
     2161 ggccgcacct gccgccggtc ccacggagcc cgcgccgcct ccaggagttc ccccaaggag
     2221 ccctagcgcc cccaacggag cgcccacccc gggtcaaaac aacctcagcc ggccaggacc
     2281 acagagatcc accagcgtca gcgcacgcgc ttctattcca cctggggttc cggcgctccc
     2341 cgtgaagaac ttgaatggca ctggcccggt ccacccagcc ctggcaggaa tgaccgggat
     2401 cctgctgtgt gcagccgggc tgccagtgtg cctcacacgg gcgcccaaac ccatcctgca
     2461 cccgccgcca gtaagcaaga gcgatgtgaa gcctgtgcct ggagtgcccg gtgtgtgccg
     2521 caagaccaag aaaaaacacc tcaagaaaag caagaatccc gaggatgtgg ttcggaggta
     2581 catgcagaag gtgaaaaatc cacctgatga ggactgtacc atctgcatgg agcggctggt
     2641 cacagcatcc ggctatgagg gcgtgctccg gaacaagagt gtgcggcccg agctggtggg
     2701 ccgcctgggc cgctgcggtc acatgtacca cctgctctgc ctggtggcca tgtactccaa
     2761 tggcaacaag gtgggccaca aggatggcag cctgcagtgc cctacctgca aagccatcta
     2821 tggggagaag acagggacac agccacctgg gaagatggaa tttcacctca tcccccactc
     2881 gctccctggt tttgcagaca cccagactat ccgcattgtg tatgacatcc ccacgggcat
     2941 ccagggccct gaacatccca acccaggcaa gaagttcacc gccagaggct ttcctcgcca
     3001 ctgctaccta cccaacaatg agaagggccg gaaggtgctg agattgctca tcaccgcctg
     3061 ggagcgcaga ctcatcttca ctattggaac atccaacacc acgggcgagt cagacaccgt
     3121 ggtgtggaac gagattcacc acaagacgga gtttggttcc aacctcactg gccacggcta
     3181 tccggacgcc agttacctag acaacgtgct ggctgagctc accgcccagg gtgtttctga
     3241 ggctatggct aaggcctgag gcctgagttg cctgccttcc ctcttgcctc gcccttagcc
     3301 cggcacatgc ctccctccac caggtgggag gagccagaag cgctgagggg atctggctgg
     3361 tggctgtggg gggtgatgga agcacaccag gccagctggt tccaacctgt ggcttccggc
     3421 aagagcagca gagataggac caccagaaag ggcgacttcc ctatggaaac gatggcgctt
     3481 tgcccttcac accacacacg aacgcacacg tgtcctgttg cacgcacgca ctcacgcacg
     3541 tacacccacg tgcctctgac ttctcccagc ttggggagaa aagagacaga aagactccca
     3601 tgacacatcc tgtggattcc acctgtgtct ccattataca agctctatag gtttgtcccc
     3661 ctcccaggac ttgagtcaag cacgggatag tggggactct gtaaggcttt caggggcaag
     3721 tctgcccctg agcctcaacc ctttaaccca cgtcagcacc gccacctgcc cactgagcac
     3781 tgcaaagcca aacggggtag aaatcccggg ttactgagta gcttttcgca ggccactggg
     3841 gacgaggcta tcttattttg tgcttgtgtc tgcctttccg ggacccttac ttcttcctcc
     3901 tgtgcccatc tcttgacctc tgtctatccc aggcaaagac atcgtccttg cctctgtact
     3961 ggcttctccc caactaaaac gctccggaca tttgagaccc acttctggct tcaggagcga
     4021 tggggaggcc ttgttcaggc tcacgcattg agctgagcga gcagcaaagc gttaacttct
     4081 ccctgcttgg aaataagcgg tgggtggctg atcatctcag gccaaccaga ggtccgttgc
     4141 ccaggcaact caccagctcc gcctctgagg attggctgtt gggatggaag ttagccaagc
     4201 tttaaaggga cgccagcaat tgctcctttg ggggaaaaaa atctaccagt cccactgtgg
     4261 gtggagaaat aaatggtctt tctccttg
//
