LOCUS       XM_039097217            3586 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dystrobrevin, alpha (Dtna), transcript
            variant X1, mRNA.
ACCESSION   XM_039097217
VERSION     XM_039097217.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3586
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3586
                     /gene="Dtna"
                     /note="dystrobrevin, alpha; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:307548"
                     /db_xref="RGD:1561985"
     CDS             243..2615
                     /gene="Dtna"
                     /codon_start=1
                     /product="dystrobrevin alpha isoform X1"
                     /protein_id="XP_038953145.1"
                     /db_xref="GeneID:307548"
                     /db_xref="RGD:1561985"
                     /translation="MIEDSGKRGNTMAERRQLFAEMRAQDLDRIRLSTYRTACKLRFV
                     QKKCNLHLVDIWNVIEALRENALNNLDPNIELNVARLEAVLSTMFYQLNKRMPSTHQI
                     HVEQSISLLLNFLLAAFDPEGHGKISVFAVKMALATLCGGKIMDKLRYIFSMISDSSG
                     VMVYGRYDQFLREVLKLPTAVFEGPSFGYTEQSARSCFSQQKKVTLNGFLDTLMSDPP
                     PQCLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA
                     GGSHSNQHQMKEYTSWKSPAKKLTNALSKSLSCASSREPLHPMFPDQPEKPLNLAHIV
                     DTWPPRPVTSMNDTLFSHSVPSSGSPFITRSSPPKDSEVEQNKILARAAPAFLKGKGI
                     HYSLNVADRLADEHVLIGLYVNMLRNNPSCMLESSNRLDEEHRLIARYAARLAAESSS
                     SQPTQQRSAPDVSFTIDANKQQRQLIAELENKNREILQEIQRLRVEHEQASQPTPEKA
                     QQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMKLLKEEELKQGTQGAG
                     SPRSSPSHTISRPIPMPIRSTSACSTPAYTPQDSLTGVGGDVQEAFAQSSRRNLRNDL
                     LVAADSITNTMSSLVKELNSEVASETESTVDSEFSRTQFEDLVPSPTSEKSFLAQIHA
                     RKPGYIHGGATSTMHGDMVPEDGDPYPQPEDGNYENESVRQLENELQMEEYLKQKLQD
                     EAYQRHVSTETRLKHPCPVTETKWRVLFWGFVIVGGFLSLALQIYFWGLF"
ORIGIN      
        1 gtcttttgta tctcagcagc tggattcata gctgccatgg caacaggcca catgatgagg
       61 tgtattggat tgctgtgtgg agcgcaaggg gaggaatgaa cacagctttt tactgaagtt
      121 aaaggttact tcggagtttc ttctggggaa gtgtgtaagg tccggcacat tagccttcag
      181 cagatgtagt gcttgtgcag aagaattaga ggcatgttgg tgcattaaac tacaaacgca
      241 gaatgattga agatagtggg aaaagaggaa acaccatggc agagagaaga cagctgtttg
      301 cagagatgag ggctcaagat ctggatcgca tccgcctttc cacctacaga acagcatgca
      361 agctgagatt cgtacagaag aaatgcaact tgcacctggt ggacatttgg aacgtcatcg
      421 aagcgctgcg ggaaaacgct ttgaacaacc tggacccaaa catagagctc aacgtggccc
      481 gcctggaggc cgtgctctcc actatgttct accagctcaa caagaggatg ccaagcactc
      541 atcaaatcca cgtggagcag tccatcagcc tcctgctgaa cttcctgctc gcagcctttg
      601 acccggaggg ccatggtaaa atctcagtat ttgctgtcaa gatggctttg gctacattgt
      661 gtggagggaa gatcatggac aagttaagat atattttctc aatgatctct gactccagtg
      721 gagtgatggt ttatggaaga tatgaccagt tccttaggga ggttctcaaa ctacccacag
      781 cagtttttga aggtccttcg tttggttaca cagaacagtc agccagatcc tgcttctccc
      841 aacagaaaaa ggtcacctta aatggcttct tggacacgct catgtcagac cctcctccac
      901 agtgtctggt atggctgcct cttctgcatc gactggcaaa tgtagaaaat gtcttccatc
      961 cggttgagtg ttcctactgt cacagtgaga gcatgatggg attccgatac cgatgccagc
     1021 agtgtcacaa ctaccagctc tgccaggact gcttctggag gggccatgca gggggttctc
     1081 atagcaacca gcaccaaatg aaggagtata catcatggaa atcgcctgct aagaagctaa
     1141 cgaatgcttt gagcaagtcc ctgagctgtg cttcgagccg tgagcctttg caccccatgt
     1201 tcccagacca gcctgaaaag ccactcaact tggctcatat tgttgatact tggcctccaa
     1261 gacctgttac cagcatgaac gacacactct tctcccactc tgttccctcc tcaggaagtc
     1321 ctttcatcac caggagctct cctcccaagg acagtgaagt agaacagaac aaaatcctgg
     1381 ctagggctgc tccagccttt ctgaagggta aagggataca ttacagcttg aacgtggcag
     1441 acaggctagc tgacgaacat gttctcattg ggttgtatgt caacatgctc cggaacaacc
     1501 cgtcatgtat gcttgagagt tcaaaccggc ttgatgaaga acacaggctg atcgccaggt
     1561 acgccgcgcg actggcggca gaatcctcct catcccagcc cacgcagcag aggagcgccc
     1621 ctgacgtctc cttcaccatc gatgcaaata aacagcaaag gcagctgatc gcagagctag
     1681 agaacaagaa cagagaaatc ttacaagaga tccagagact tcgggtagag catgagcaag
     1741 cttctcagcc cacacccgag aaggctcagc agaacccgac cttgctggca gaactccggc
     1801 tcctcagaca gcgcaaggac gagctagaac agaggatgtc tgctctccag gagagccgga
     1861 gagagctgat ggtccagttg gaaggtctca tgaagctctt gaaggaagaa gaattgaagc
     1921 agggaaccca gggggcaggc tctccacgct cttcccccag ccacaccatc agcaggccga
     1981 tccccatgcc catccggtcg acgtctgcct gttccacacc agcgtacacc ccacaggact
     2041 ccctcactgg ggtaggggga gatgtgcaag aggcctttgc acaaagctca agaaggaatc
     2101 taaggaatga cctgctggta gctgcagatt ccatcaccaa taccatgtcc tctctggtga
     2161 aggagctgaa ttcagaggtg gcgagtgaaa cagaaagtac ggtggattct gaattttcga
     2221 gaactcagtt tgaggatctg gttccatcac cgacctctga gaagtctttt ctagcccaaa
     2281 tccacgcccg aaaacccggg tacattcacg gtggagctac aagtaccatg catggtgaca
     2341 tggtcccgga agacggagat ccttacccgc aaccggagga tggcaactac gagaacgagt
     2401 ctgtgcggca gctggagaac gagctgcaga tggaggagta cctgaagcag aagctgcagg
     2461 atgaggccta ccagcgccac gtcagcactg agaccagact caagcacccc tgtcctgtaa
     2521 ccgagacaaa atggcgtgtg ttgttttggg gttttgtgat tgtcggtgga tttctttcct
     2581 tggctctcca aatttacttt tggggcctgt tctaaatgca aacccagcag gtttcatccg
     2641 tcctgtccat tctattcaac tatatctcgc aggggttgtt ctttctcatt ccacaacgaa
     2701 ttgcacatca gaactgatgg cctaagaatg aacactggtc taacagagcc aaacctcccc
     2761 acagcattgt ggtcaaggag gtgggtgaag tctactgtat aggattcagg aactggttgt
     2821 ggtttgtcag gatggaggtt ggggtaagtt tgattggtcc aagggagacg tgtcggagac
     2881 tatgaagatg gattattgga tggtctataa taaggcaggg aaggttcatt tgtaagtagt
     2941 aatatgaact gaattgcatt aagattgtgg cctttgtgtg atatatacta tgtattttct
     3001 tatatgcatg agccaaactg ttgtgatata atttagcact gatgtctgct cttattttga
     3061 ccatcttcgt ccactgttat tagttcttgg ccgttaagtg tagatagata ttgtaaatat
     3121 ggcagccttg gttgctatgc tcacattggt tcaattccac gcaaggagac acaagcaaag
     3181 aactccactg tgtcctcaga aaacagggca tttttccctt tgaaccaaaa agaaagaaaa
     3241 aaaagtcaga agcattcatt acatcttgag gctaattaac ataagacatt ttaaattgtg
     3301 actactgtaa tttgacccca taaccaattc aggaacacta aagagttcac tatatccatg
     3361 gttattgtaa caaaactact atagtctgtt gttttgtttt gttgatattg ctgttaagta
     3421 ttgggatgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgttggaacc
     3481 tcctggggac atgttatatt ttgaagtgat taaactattt aattgtgtgt ctatattttg
     3541 gaatggaatt atttcttcat taaaaatgtt ttttaaaaca ctataa
//
