LOCUS       NM_001398981            1259 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus D-aminoacyl-tRNA deacylase 1 (Dtd1), mRNA.
ACCESSION   NM_001398981 XM_006235128
VERSION     NM_001398981.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 29, 2021 this sequence version replaced XM_006235128.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC159413.1, FQ214547.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-123               JAXUCZ010000003.1  152449193-152449315
            124-214             JAXUCZ010000003.1  152453196-152453286
            215-450             JAXUCZ010000003.1  152466614-152466849
            451-557             JAXUCZ010000003.1  152485109-152485215
            558-730             JAXUCZ010000003.1  152587089-152587261
            731-1259            JAXUCZ010000003.1  152611432-152611960
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..1259
                     /gene="Dtd1"
                     /note="D-aminoacyl-tRNA deacylase 1"
                     /db_xref="GeneID:362227"
                     /db_xref="RGD:1311821"
     exon            1..123
                     /gene="Dtd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             81..710
                     /gene="Dtd1"
                     /EC_number="6.1.1.21"
                     /note="D-tyrosyl-tRNA(Tyr) deacylase 1; D-tyrosyl-tRNA
                     deacylase 1 homolog"
                     /codon_start=1
                     /product="D-aminoacyl-tRNA deacylase 1"
                     /protein_id="NP_001385910.1"
                     /db_xref="GeneID:362227"
                     /db_xref="RGD:1311821"
                     /translation="MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISMEDTQKELEH
                     MVRKILNLRVFEDESGKHWSKSVMDKEYEVLCVSQFTLQCVLKGNKPDLHLAMPTEQA
                     ESFYNSFLEQLRKSYRPELIRDGKFGAYMQVHIQNDGPVTIELESPAPGAASSDPKQL
                     SKLEKQQQRKEKTRAKGPSESSKERNTPRKEDRSASSGAEGDVSSEREP"
     exon            124..214
                     /gene="Dtd1"
                     /inference="alignment:Splign:2.1.0"
     exon            215..450
                     /gene="Dtd1"
                     /inference="alignment:Splign:2.1.0"
     exon            451..557
                     /gene="Dtd1"
                     /inference="alignment:Splign:2.1.0"
     exon            558..730
                     /gene="Dtd1"
                     /inference="alignment:Splign:2.1.0"
     exon            731..1259
                     /gene="Dtd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagggcgcc ggccgaggag ccactggcgg agtcgcaagg tctgactaca cggcgcgtcc
       61 cagtcgctac agccgccgcc atgaaggccg tggtgcagcg cgtcacccgg gctagcgtca
      121 cagttggagg agagcagatc agcgccatcg gacggggcat ctgtgtcttg ctgggtattt
      181 ccatggaaga cacacagaag gaactggagc acatggttcg aaagatttta aatctgcgtg
      241 tgtttgagga cgagagtggg aagcactggt ccaagagcgt gatggataag gagtatgagg
      301 tgctgtgcgt cagccagttc actctccagt gtgtcctcaa gggaaacaag cccgacttgc
      361 acctggccat gcccacagag caggcggaga gcttctacaa cagcttcctg gagcagcttc
      421 gcaagagcta cagaccagag ctcatcagag atggcaagtt tggtgcctac atgcaggtgc
      481 acattcagaa cgatgggcct gtgactatag aattggagtc ccctgctcct ggagctgcta
      541 gctctgatcc aaagcagctg tcaaaactgg agaaacagca gcagagaaaa gagaagacca
      601 gggccaaagg gccttctgag tcaagcaaag aacgaaatac accccgaaaa gaagaccgca
      661 gcgccagcag cggggcagag ggtgatgtgt cttcagagag ggagccatag atgcagaagc
      721 atgagctcag caaattacca tcaggcagaa ccggatcctg aaaaattcaa gatgctaagc
      781 ccctacactg ctttaagaat tcgggactca aatatgaaaa gaaaatcaga aacaagacac
      841 tgggaacctg aatatccctg ctgagaaaca ccaaaggacc attccatttt gtgtattgct
      901 gtggtctgat gaagtagggt gtggtgggtg tgtgggacgg gggaatgctt gtgggttcac
      961 acccatgcct tccccacaga gagaggtcca ttggtttcct tgctttctac catgtgttgg
     1021 cttgcttttg gaacaggcta gcccagcatc atctgtcctc aagtttactg tggtgtattg
     1081 tgtgtctgtg atcagtctcc agcacatccc tgctgtccat catctccatc actgagtcac
     1141 aagacagggc tggtgttagg aggcaaccaa caatagcata ctgtatgaga ctttgcatcg
     1201 tatacacctt ctcttctttt ctaaaaataa ataataataa aaccatatat ctcaatgaa
//
