LOCUS       XM_039097378            5432 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus desmoglein 1 (Dsg1), mRNA.
ACCESSION   XM_039097378
VERSION     XM_039097378.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5432
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5432
                     /gene="Dsg1"
                     /note="desmoglein 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 ESTs, 3 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:291755"
                     /db_xref="RGD:1309925"
     CDS             1..3147
                     /gene="Dsg1"
                     /codon_start=1
                     /product="desmoglein-1"
                     /protein_id="XP_038953306.1"
                     /db_xref="GeneID:291755"
                     /db_xref="RGD:1309925"
                     /translation="MDWHSFRRAALLLAFLFKVNRCGCFSQVVLEVNSEFQIQVRDHN
                     AKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVG
                     IDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMD
                     INDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSLIAFKIVRQEPSEAP
                     MFIINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAECECSISILDVNDN
                     IPYLDQSSYDIKIEENALHSNLQQFRVIDLDEEYSDNWKAVIFFVTGNEGNWFEIEMN
                     ERTNVGTLKVVKPLDYEAMQKLQLSIGVRNVAEFHQSILSQYTLTVTMITVKVLNVVE
                     GSVFRPGSKTFVVHSRMDANYRVGEFTATDLDTGMTSTNVRYVMGNNPEGLLVVDSKT
                     GIITLRNRVTMEQYQRLNGRYEGTMLSIDDSLQRTCTGTIIIELDGTGWETGGGGGGG
                     GGGGGDGGGGVTNGYKDTSTEEPQRTTLTRDIDNTDTYQADEDNVHLGPAGIGLLIMG
                     FLVLGLVPFLLICCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPEPHDGITTICV
                     PQMPPGNANIIECIDNSGVYTNEYCGREMQDLGGGERTTGFELVDGVKTSAAPEICQE
                     YSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGAGSP
                     TGSVGCCSFIGEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICP
                     QRTEPLASGHPPISPHFGTTTVISENTYPSGPGIQHPMQIPDPLGYGNVTVRESYTTS
                     GTLKPSVHFHDNRQASNVVVTERVVGPISGADLHGMLEIPDLRDGSNVIVTERVIAPG
                     SSLPTSLTIPNPLETSNVVVTERVIQPTSGMIGNLSMPPELSSAHNVIVTERVVSGAG
                     VSGVTGTAGIGGVGGIGTMSAGGVGDGGTGMSMGGTATIGHMRSSSDHHFSQAVGSAS
                     PSMARSRITKYSTVQYTK"
ORIGIN      
        1 atggactggc actccttcag gagagctgcc ctgctgcttg ctttcctgtt taaagttaac
       61 cgttgtggct gcttttcaca ggtggtgctt gaagttaaca gtgaatttca aatccaggta
      121 agagatcata acgccaaaaa tggtaccatc aagtggcatt ccatcagaag gcagaaacga
      181 gaatggatca agttcgccgc agcctgtcgg gaaggagaag acaactcaaa aagaaaccca
      241 attgccaaaa ttcattcaga ttgtgctgca aaccaaccag tgacataccg catctccgga
      301 gtaggaattg accaaccacc ttatggaatc ttcattatta atcagaagac tggcgaaatc
      361 aatataacat ccattgttga tcgtgaagtc accccctttt tcattatcta ctgccgagca
      421 ctgaatgcac aaggtcaaga cctggagaat ccactagagc ttagagtcag ggtgatggat
      481 ataaatgaca accctcctgt gttttcaatg actacatttc taggacaaat cgaggaaaac
      541 tctaacgcaa acacactggt aatgaagctc aacgctaccg acgccgacga gcccaataac
      601 ctaaactcac tcatagcctt caagatcgta agacaggagc cttccgaagc accaatgttc
      661 atcatcaaca gaaaaactgg agaaatcaga acgatgaata attttctaga cagagagcaa
      721 tacagccagt attctcttgt ggtgagaggc tcagaccgtg acggtggggc agacggcatg
      781 tctgcagaat gcgagtgcag catcagcatc ctggatgtca atgacaacat tccgtacttg
      841 gatcagtcat cctatgacat caaaattgaa gaaaacgcac tgcactccaa tctacagcag
      901 ttcagagtca ttgatttgga tgaagaatac tcggacaact ggaaggcagt cattttcttt
      961 gtcactggaa atgagggaaa ttggtttgaa atagaaatga atgaaagaac aaatgtagga
     1021 actctgaagg ttgtcaagcc cctagattat gaagccatgc agaaactaca gcttagtatt
     1081 ggtgttcgaa atgtagctga attccaccag tcaattcttt ctcaatatac actcacagtg
     1141 actatgatca ctgtgaaggt attgaatgtc gtcgagggct ctgtgttccg accaggttca
     1201 aagacatttg tggtacatag tagaatggac gcaaattaca gagtggggga gttcacagct
     1261 acagacctgg acacgggtat gacctccacc aatgttagat acgtaatggg aaacaaccca
     1321 gagggcctgc tggttgttga ctcaaaaaca ggcataataa ctttaagaaa cagagttact
     1381 atggaacaat accaaaggct taatgggaga tatgaaggaa caatgctatc aatagatgat
     1441 tcccttcaga ggacctgcac tggaacaatc atcattgaac ttgatggcac tggctgggaa
     1501 acaggtggtg gtggtggcgg tggcggtggc ggtggtggtg acggtggcgg tggtgtgact
     1561 aatggatata aagacacttc cactgaggaa ccgcaacgca ccacattaac aagggatatt
     1621 gacaatactg acacttacca agccgacgaa gacaacgttc accttggtcc tgccggcatc
     1681 ggtctgctca tcatggggtt cctagtctta ggattggttc cattcttgtt gatctgctgt
     1741 gattgtggag gagcccctgg tggtggagct ggattcgaac ctgttccaga atgttctgat
     1801 ggagcaattc acacttgggc cgtagaaggg ccacagcctg aaccccatga tggtataacc
     1861 accatctgtg tgccacaaat gccacctggt aatgccaata ttatagaatg tattgacaac
     1921 tcaggagttt atacaaatga atattgtggc agagaaatgc aagatctggg aggaggagaa
     1981 agaactacag gatttgaact ggtggatgga gttaaaacat cagctgcacc tgagatatgc
     2041 caagaatact caggaacatt aagaagaaat tcaatgagag aatgtagaga tgggggcctc
     2101 aatatgaatt tcatggaaag ttacttctgc cagaaggcct atgcgtacgc ggatgaagat
     2161 gaaggacgtc cttccaatga ctgtttgctc atctatgaca tcgaaggcgc ggggtcccct
     2221 acaggctctg tgggctgctg cagcttcatc ggggaagatc tggatgaaag cttccttgat
     2281 accttggggc ccaagtttaa gaagttggcc gatatcagcc taggaaaaga aatagactca
     2341 tacccagatc ccgatccttc ttggcctcct cagagcactg aaccaatttg cccccagcgt
     2401 acagagcccc ttgctagtgg acacccaccc atctccccac attttggcac taccacagta
     2461 atttctgaga acacctaccc ctctggccct ggcatacagc atcctatgca aattcctgat
     2521 cctctgggct atggtaatgt cactgtgagg gagtcctata ccacctctgg cactctgaaa
     2581 ccctctgtcc actttcatga taaccgacag gcttcaaatg tggtggtgac agagagggtg
     2641 gtgggcccca tctctggtgc tgatttgcat gggatgttag agatacccga cttgagagat
     2701 ggatcaaatg ttatagtgac agaaagggta atagcaccag gctcaagtct acccacctcc
     2761 ctaaccattc ctaaccctct agagacctca aatgtagttg tgacagaaag agtgatccaa
     2821 ccaacttctg gcatgatagg caacctgagc atgccccctg agttatcaag tgcccacaac
     2881 gtgattgtga cagagagagt ggtttctggt gccggtgtaa gtggagttac gggcaccgct
     2941 ggaataggtg gggttggagg cataggcacc atgagtgctg gtggagtagg tgatggtggc
     3001 accgggatga gcatgggagg gacagccact attggccaca tgaggagttc ctctgaccat
     3061 cactttagcc aggcagttgg atctgcctcc cctagcatgg ctcgaagtcg aatcacaaag
     3121 tacagtacag tgcaatatac caagtagtca tgatcccaga atacagttca ccactgtctc
     3181 tgtgatttac atccaactcc tgccctccaa atctaagagt gcaatttacg atgcagagca
     3241 ggctatagga gactgtggag taaggaagaa ccacagtgac agtaacacac ggtaacatca
     3301 ccgtggagaa gagtgctccc tagcagtggt aatttttttc ttatattagc actaaggaaa
     3361 taatgacagt gaacttgagg tacaatctta tctgtggcta tgtgatctac agggttgtct
     3421 gtgtttttta atgtgtgccc tgtagggtat caccagcatg ttgaataaat aaaatgtggc
     3481 tacataaatg cactggcttt aagtggcgat tggaagaatt cttctcgctg ttcagaaatt
     3541 aaccaaaact gtttcaatgt gtagcttgag ctcacacagg tgaggaaaat ctgacatttc
     3601 cttcgcacgt gtcttgtctg tttcacaggt aatacaaatt aaaaagccct cccacagatt
     3661 caggctaagg ttaatagatt tctagctaca tggttatgta tataacatac cagttattct
     3721 tactgtggcc acacctaagc tccattagat ggaatccttt ccagatttat aagtatgttc
     3781 taggaggaaa gcccatagac aggaacaata cagtgagtct catttggcac agactgagcc
     3841 tggatctcaa gatgtggttt tagttaagtc tcctgtggag tcggggactt tcctggctcc
     3901 catgtgtttc ctatgtatga cttgaggaac agtgcttact gggtggagaa gggtatcgta
     3961 atcatttttg cctataccac tgtggttcag gggaaagttg taaatggcat ggctgccctc
     4021 acaagtgtta actctcctcc caagtacaga caagacagta ttatctcttc agtaagtcat
     4081 acccgttcct gtgcagctct ttagtgaata aacccatagt taagataatg tacctaagtt
     4141 gagctgttgg gaagaagctc gcagtatggc taagcattgg ggcaattttt caaggggatc
     4201 tggggggggg gggctgtttt tagaacatga aaactgtctt cagtgggaaa tgttagaaaa
     4261 taattgttca gtaaaggaaa actatatgat ttaatgaagt tgaaattagt gtcatccttt
     4321 gaatgactct ctgatgtcat ttggaagtga ttaaccatga ccctttacca gaagtggtgt
     4381 tactttagga aaaagtgatg tagatactag gctactagac aagtcctttc cttacctaaa
     4441 atgtgtcatc cacacaactt ggaagtttct cattttgctt tgttaataat ctcttggctt
     4501 ctaagcattc tgacttaaag acagtttaca agttatagtg tgatatattt ttctagcttc
     4561 gaaatttagt aatgtgctat ttatgatgtg ttgtttctgt atgtttgcca attggtgttc
     4621 cctggtttac aacctctcag aagaatcgaa gctttctaag aaacaggtac atttattaat
     4681 gcagggtagt ggaatctttt cttgttttca aattcaccat taaaataggc taaagtaaaa
     4741 tgctgtgttt atatggcata taagaatggg gaaaatacta tccctgagtt gtgaattgta
     4801 tacaactttt aaagatatat tcatcacctt accatccatt tctcagggtg tcacagaatc
     4861 acagcattta tcaaagacct aggagcaatt ggttgctcca gcaagagcta ctttgttcta
     4921 tatgagtgga tacagtggat attaaaggcc acaatatgtc aaattttaac tgtatagaac
     4981 atgtaaagtt ttgctaacat gtagcaagcc aaaatgcaga ggtataaata aagtcactca
     5041 aaggagtcct tcttttattg tgctcgaaaa tttagggtaa tgcattgagg atatggtttg
     5101 gtttttgatt tttcgcttac tggtttcttt tgcttttgga gataactcaa aaggtatttg
     5161 ttgaaatata cttgaagatg cctaggtttg gaagtttgaa cagatagaaa taattaatat
     5221 agttttcctt ctttcttttt tcattccttc atccaaagga aagtgtactt ttgccttagt
     5281 gtgctataac cttgctatat ctttgcttag atgtctgatg aatcccaaat acttttttca
     5341 ttgcctaaca agtggtaata tgacgatctt taataaatgt gatcatcatt catcagttat
     5401 ataagacctg ggaaaataaa actttgaacg aa
//
