LOCUS       XM_039111355            6040 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dorsal inhibitory axon guidance
            protein (Draxin), transcript variant X1, mRNA.
ACCESSION   XM_039111355
VERSION     XM_039111355.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111355.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6040
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6040
                     /gene="Draxin"
                     /note="dorsal inhibitory axon guidance protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 11 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:691317"
                     /db_xref="RGD:1585098"
     CDS             714..1847
                     /gene="Draxin"
                     /codon_start=1
                     /product="draxin isoform X1"
                     /protein_id="XP_038967283.1"
                     /db_xref="GeneID:691317"
                     /db_xref="RGD:1585098"
                     /translation="MGGGASARWGSTRGSTKTQEEHHTQHRGKLIEGEPMAGSVLRVP
                     MLFLILLLFPELYMTGTLASGSSARNLPETHSHLPSSALWVPQTSHHGRRGLGKKDRG
                     PGRPRRTQEGAVVTATRQASQMTPGQPPAGLLQNKELLLGLALPYPEKEARSPGWERV
                     KKRGREHKRRRDRLRLHRGRPAIRGPSSLMKKVEPSEDRMLESTMEESSTSLAPTMFF
                     LTTADGAMPTVEESRILPVTSLRPQTQPTSDGEVMPTLDMALFDWTDYEDLKPEVWPS
                     AKKKEKHWSHFTSDGNETSPAEGEPCDHHQDCLPGTCCDLREHLCTPHNRGLNNKCFD
                     DCMCTEGLRCYAKFHRNRRVTRRKGRCVEPETANGDEGSFINI"
ORIGIN      
        1 cagtcgaggg gactaaaccc cacagcgtgg atcacactca tatctgtttt ggtcttgatg
       61 attcactgct gggcctccct ggagactgag ccatctttgg gggccatctt taatgtggga
      121 aggaacagtt ctaagcccaa ctcagacttt gggaaaaagc cacaggcaga gctacagggc
      181 tagagccaca gggctagagg acaggagcac ctgccttgct ttgtgcgcaa acgctgggcg
      241 ctttgtgaca gagcctccaa ctggctttca tagtgacagg aatggattgg agcccatctt
      301 cactggggat ccttggcaca gtttctgtgg tggcccatgt ttctcgagtg gctctctgcc
      361 agactggcat cctgacagct gggctatgcc aagatcttct tacaaatccc tggtgtttgg
      421 agagggggct ctacgaagtc tgccagctcc tgtgtactca cacccacgcg catgcgcatt
      481 tgcgcacacg cacacaccag ggattcacat ccatccacaa acctggccac tagtacttat
      541 gcgaacagaa tcctagatac gctgcagttc tgagggtggc ttgggcacac cctctcgccc
      601 ctcactgtgc cagggaagtc aggcacttcc ttacgagtgg ataatcccaa accaatatgg
      661 cgcatgagat ctcgaagcca taggagacac cggcacggag gagaaccatc atcatgggtg
      721 ggggagcatc agcacggtgg gggagcacta gagggagcac taaaacgcaa gaggaacatc
      781 acacccagca tcgaggcaaa ctgattgagg gagagccaat ggcagggtcc gtcctcaggg
      841 tccccatgct gttcctgatc ctcctgctat ttccagagct ctacatgaca ggcaccctgg
      901 cctctggatc ctctgcccgg aacctgcccg aaacccactc ccacctcccc agctctgcac
      961 tatgggtgcc tcagacaagc catcacggtc gtcgaggcct ggggaagaag gacaggggcc
     1021 caggcagacc tcgccggacc caggagggag ccgtggtcac tgccaccagg caggcttccc
     1081 agatgacacc tggacagccc cctgctggcc ttctgcagaa caaggagctg cttctggggc
     1141 tggcattgcc ctacccggag aaggaggccc ggtctcctgg ttgggagagg gtgaagaaac
     1201 gtggcagaga acacaagagg cgcagggacc gtctgcggct gcatcgaggc cggcctgcca
     1261 tccgtggacc cagctccctc atgaagaagg tggaaccctc tgaagaccgg atgctggaga
     1321 gtaccatgga ggagtcttcc actagcctgg cccctaccat gttcttccta accacagccg
     1381 acggtgccat gcctactgtg gaagagtccc ggatcctgcc cgtcacctcc ctgcggcccc
     1441 agacacagcc cacgtctgat ggggaggtga tgcccacact ggacatggcc ctatttgatt
     1501 ggacggatta tgaagactta aagccagagg tttggccttc tgcaaagaaa aaagagaaac
     1561 actggagtca ttttaccagt gatggtaacg agacatcacc tgctgaggga gagccgtgtg
     1621 accatcacca ggactgcttg ccaggaactt gctgtgacct ccgggaacat ctctgcacac
     1681 cccacaaccg cggcctcaac aacaaatgtt tcgatgactg catgtgcacg gaagggctgc
     1741 gctgctatgc caaattccac cggaaccgca gggtcactcg aaggaagggg cgctgcgtgg
     1801 aacctgagac agccaacggg gacgagggat ctttcatcaa catctagcgc cctagtggtg
     1861 cctccccacc ggcccggggt ctgagccaag gaggtttagg acaaacaggg cgtgttagta
     1921 actagctcaa cttgaggctg agtggggaat caatggttga ggctgtaggt gcaggcccaa
     1981 ttccctcacc cccaaagcag gaaggccgct tggctgagag cagtgcgcct gcgcccgccc
     2041 gcttgcagac cgcagccagg gacggggcgg ggccggtccc cagccaggac ccggctcagc
     2101 taagggatcc tgctaaactc ggtggctgtg tggagcgcac cctcttctgc tctacgccag
     2161 cactgcaaca gtttcaattt gtgaaatcaa gaaggctccc ttgactggaa agggttggaa
     2221 agagagggga cacctgacag gcgtgcatct ggaatgctgt gttccaggct aacgccaagc
     2281 accacgtgta tttttactga atttccacag agaccgtggt aagagatcac tgacgcgcac
     2341 ccgaggtgca tgatcgtcgt gcagggtccc acgtcatcca tggtcctcca gttctggcag
     2401 cagagacagc ttgactgtct tcagcctttc ccaagagaga cttacgtctt tttgatggac
     2461 cgagtcttac tctttggcca agctggcaac tcagacaatc ctcctgcctc ggtcttccaa
     2521 atgctggaat tataggcatg ggtcggcata attcggcagg tgtatcttcc ttaaaaacaa
     2581 aacattgggg ttggggattt agctcagtgg tagagcactt gcctagcaag cgcaaggtcc
     2641 tgggttcggt ccccagctcc gaaaaaaaga aaaagaaaaa acaaaacaaa acaaaacatt
     2701 agagctgggg atgtggctaa gtttgtactg tgcttcctta gaatgcatga accttgcctg
     2761 gactgggctt cttccgatca taagtgtgag gtcagactac aggagacgac tgtatctcaa
     2821 gcaaaacaaa gtaagctgtt tgcctaacct gcacagggtc ctgggcttga tcccatcccg
     2881 tttcctcctt tctccacttc tttgtctgag cctctacaca gggcaccctt ttttcaggtg
     2941 aaggaagatc ctggtggctg ggtcttacca tgtgacaggt gctaattgaa gtcatgaata
     3001 ggggaaacag taactttcct cctgtgcctg tagccctgat catccagtcc tgggccaccg
     3061 gtcactccct cctgagctgt cctcagtttc tactccactg gaaaggcata catgcatccc
     3121 catgtgctcg ctggacgtac tgtttaatga tcccccctcc cgccccccag actccatcct
     3181 tccacatcag caccaatgcc ccttggaaac tctgagactg gggtacggtg tgaagcaccc
     3241 ctgcaggcta gaaccatgac gacagcccac ctttaccacc accacctctc ggaacatgtt
     3301 tcagcacatc tggcttcagg agaacccttt agatccctgc acccggcatc tcccgcctgg
     3361 tcaacttttg caaaggacaa aaagccttcg caggccaagc cctccccagc ctggaccata
     3421 tccatgggat gccagggctg tttactgctt tggggtaacc agtctggtcc agggtttagg
     3481 caccaagaaa gatctagaag aaatcaaata ggcttgttct tctttccaag ttgggtctga
     3541 taggcctggg aatggggagg ggggcaggag ctggaaggat caagtgctaa tacagactta
     3601 ttttcctttt catagtacca gggccttgcg cggcccaggc aagtgctcta ctactgagct
     3661 acatgctaac tggtctgggc ttcaaggtct ccaaagctcc tcgggaagct gccttggtgg
     3721 ccacggctga gaacattggt cccctgtctt ctcaattact gcagtaaaca gcctgttcct
     3781 cctctcacac cttgccaacc ttagggaagt cacttaaagt ctctttgcct tgacttttca
     3841 tcttcgaaat gtaaatgcct gggtcttggt tcttaccagg cgcttagtgc agtctctctc
     3901 cctccctccc tctctctctc tctctctctc tctctctctc tctctctctc acacacacac
     3961 acacacacac acacacacac acacacacac acacacaccc taccgagagt gccagctcac
     4021 aaacttcaac aggccttctc ttccacagtg atccatcata tagccaagga tttttttttt
     4081 taaatgatgt ctcactgtac agccctagct gatctgaaac cgctaatgta aggcagcttg
     4141 gcttggcccg gagctcacag agatccacct gcctctgcct ttcctgtgtt gggattaaag
     4201 gcgtgcacca ccaggcacag ttcaggatgg tttctccaaa gtgcatgaat cccagcactc
     4261 gggaggtaga agtaggtgaa tctctgtgag ttcaaagcca ggctgttcta catagagagt
     4321 tctaggacag ccagggctat gtagagagac cctgcctcaa aacaaaacaa aacaaaacaa
     4381 aacaaaaacc aaactaacaa aaaaatcatc aacaacaaca aaacctagag tgtatgtcac
     4441 aaaacaaagt cactgtgctg gagaagcatt tagataccca ggcggaggaa gggatagaag
     4501 aacttgtggc taggcaggaa caggtttgtg aatgtaaaag gggacggacc ctggtggaga
     4561 acggaatagg gcaagaggag gctaacagct gcctagacgg acacctgagc tgaagcctca
     4621 ggaacactct gacagacccc cattgtcccc agactggcct tgtctggtga tatgagggtg
     4681 gttctcacgg ctggtagaaa gggactgagg gccctatgac ctgagatgca aacttcaaag
     4741 aaaatgacag ctttgccagc tccttgggga ggtcaaattc caaggccaca ccccttctgc
     4801 tgagaagctg catgggagtc cttccccaaa ccccttaggt cttccccata ctccctctgc
     4861 agctgcctta cagctagcat ctgtggaacc tacaaggagc aggtttagaa actgaggaac
     4921 cgggaactgt gggtgccaga aaagtggagt cttgagaggc caagagctga ggctcccttt
     4981 tgagggttct ggggtctgaa ctacattaat tctggccctc catgacagcc ttcatgctca
     5041 cagaccatag tgagtgcgtg cttacaggcc acggcaattg tgtggacaca gaaaacagga
     5101 agtcagagca agctggctgc atgcagagca aggggtttat actacaggga gtgaggtttc
     5161 caagtctcaa ggaagagcag gtggtctggg accgatccat ggcaaaggca tcagctgggt
     5221 gtcccagagc ctccttcagc ctttcctagg ctatctctgc aggtgccaat aagcaccatc
     5281 tacataacct gcaagaaata tgtttagaaa gcaaaggacc aggagcccta ggtaccagga
     5341 atgtgggtcc tacacctact gatgcacagt cacagggctg ccatcttccc cactcccagc
     5401 atctggcttc taacacaatc tccgggttgc ttttgggtgt gatggggtgt cgcaggtcca
     5461 ggatacagat ggaagacaga tgctggttgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     5521 gtgtgtgtgt gtgcatttgg acagttcagt actcttgcaa ctctgaggtc tgtttccgag
     5581 caacttagca gcaaggacaa actccaccat ccaaaggcct gcttcctgga ctgttggctc
     5641 tgcttagagg ccactagtgg ggcttaagag atggctcagt ggttaagagc actgaatgct
     5701 cttcagggga cccatgtttg attcccagca cccacgtggt ttcacagctg tctataactt
     5761 aaacatctga caccctcact cagacataca tgcagacaaa acatcaatgc atataaaata
     5821 aaaaataaaa tgacatttta gaggacacca ggtagggctc caagacctgg acccttttat
     5881 ctttgtactt ttggagtctt gaataattcc ttggagggct gtagctcctc cttgaaatgt
     5941 gggagcatca agggaagggg tgttgttgcg ccttggttta taatgcctcc ttgcatggat
     6001 tctccaagct gtaaataaag aggtgacaat tgctaagtca
//
