LOCUS       NM_001109407            2606 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus DEAQ box RNA-dependent ATPase 1 (Dqx1), mRNA.
ACCESSION   NM_001109407 XM_001057161
VERSION     NM_001109407.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473957.1.
            
            On Oct 4, 2007 this sequence version replaced XM_001057161.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..2606
                     /gene="Dqx1"
                     /note="DEAQ box RNA-dependent ATPase 1"
                     /db_xref="GeneID:680434"
                     /db_xref="RGD:1591766"
     exon            1..49
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     exon            50..295
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..2221
                     /gene="Dqx1"
                     /EC_number="3.6.4.12"
                     /note="DEAQ RNA-dependent ATPase; DEAQ box polypeptide 1
                     (RNA-dependent ATPase); ATP-dependent RNA helicase
                     DQX1-like"
                     /codon_start=1
                     /product="ATP-dependent RNA helicase DQX1"
                     /protein_id="NP_001102877.1"
                     /db_xref="GeneID:680434"
                     /db_xref="RGD:1591766"
                     /translation="MASGLAEESEPSPGESELAVNPFDGLPFSSCYYELLEQRRALPI
                     WAARFLFLEHLESSPTGVVLVSGEPGSGKSTQIPQWCAEFALARGFQTGQVTVTQPYP
                     LAAMSLASRVADEMDLTLGHEIGYSIPQEDCTGPNTMLRFCWDRLFLQEVASTRGPGA
                     WSVLVLDEAQERSVASDLLQGLLRDTRLRNLPGDPRVVIVTDSALEPKFQAFWGNSPT
                     VHVPREPGENPTLTYKDTVPADLVEAACQAVLELCQREEAPGDVLVYLPSEEEISLCC
                     ESLSREMGMLAVPGPLPRVLPLHPGCGQAIQTVYEDTDVSVRKIVVTHWLADFSFSLP
                     FIQHVIDSGLELRSVYNPRIRAESQVLRRISKCQAEARLLRARGFPPGTCLRLYSKST
                     LDLEAPPLPHPKVCEENLSSLVLLLKRKQIAEPGECHFLDRPAPEALMQALEDLDYLA
                     ALDDDGDLSDLGIILSEFPLPPELAKALLASCEFNCVDEMLTLAAMLTAAPGFTRPPL
                     CAGEAALRRGLEHADGDHSSLIQVYEAFVQSGADETWCQARGLSWEALCQARKLRAEL
                     LELMQRIELPLSLPAFGSEQNRRDLQKALLSGYFLKVARDTDGTGNYLLLTHKHVAQL
                     SPYCVYRNRRTPAQPPTWVLYHRFSISKDNCLCTVSEIQPEMLVELAPPYFLSNLPPS
                     ESRDLLNQLREGTEPSAAVTETASPQEYGDGCVLQ"
     exon            296..489
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     exon            490..877
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     exon            878..1111
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     exon            1112..1211
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     exon            1212..1370
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1562
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     exon            1563..1682
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     exon            1683..1873
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     exon            1874..2064
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
     exon            2065..2606
                     /gene="Dqx1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtgtccaga actggctgcc ttcctgacac gtctcagagc tgctggcagg ttctatgaac
       61 agccatcatg gcctctgggc tggcagaaga gtctgaacca agtcctgggg agtctgaact
      121 ggctgtgaac ccctttgatg ggctcccctt ctcttcttgc tactatgagc tgcttgagca
      181 gcgtagagcc ttgcccatct gggctgctcg tttcctgttc ttggagcatt tggaaagtag
      241 ccccactgga gtggtgctgg tatctgggga gcccggctct ggcaagagca cccagattcc
      301 tcaatggtgt gcagagtttg cgctggccag aggattccag acaggacagg ttacagtcac
      361 tcagccctac cctctggcag ccatgagcct ggcttcaagg gtggctgatg agatggacct
      421 gaccctgggt catgagattg gctacagcat ccctcaggaa gactgcactg ggcccaatac
      481 catgctcagg ttttgctggg acaggctatt tctacaggaa gtagcctcga cccggggccc
      541 tggagcctgg agtgtgctgg tactggatga ggctcaggag cggtcagtgg cctcagattt
      601 actacagggg ctcctgcgag ataccagact gagaaacctt ccgggggatc ccagagtggt
      661 tatagttact gactcggcgc ttgaaccaaa attccaagcc ttctggggca attctcctac
      721 tgtgcatgta cccagggagc ctggtgaaaa tcccaccctt acctacaagg acactgtccc
      781 tgctgacctc gtggaagctg cctgccaagc tgtgcttgag ctgtgtcagc gggaagaggc
      841 accaggagat gtgctggtgt atctgcccag cgaggaggaa atctctctgt gctgtgaatc
      901 cttgtccagg gagatgggga tgttggctgt cccagggcct cttccgaggg tgctacccct
      961 tcaccctggc tgtggtcaag ccatccagac tgtgtatgaa gacacagatg tgagtgtcag
     1021 aaagattgtg gtcactcatt ggctggcaga tttctccttc tccctccctt tcatccaaca
     1081 tgtcattgac tcaggactgg aacttcgcag tgtttacaat cctcggatcc gggcagaatc
     1141 ccaggtgttg agacgaatta gcaagtgtca ggcagaggca aggctgctgc gggccagagg
     1201 gttcccacca ggaacctgcc tccgcctgta ctctaagtct accctagacc tagaggctcc
     1261 cccactgccc caccccaaag tgtgcgaaga gaatctgagc tccctggtat tgctactaaa
     1321 gaggaaacag attgcagagc caggggagtg ccacttcctg gaccggcctg caccagaagc
     1381 actgatgcag gccctggaag acttagacta tctggccgct ctggatgatg atggggacct
     1441 gtcagacctc ggaatcatcc tctcggagtt tcccctgccc ccggagctgg ccaaagccct
     1501 gctggcctcc tgcgagttta actgtgtgga tgagatgctc actctcgcgg ccatgctcac
     1561 tgccgctcct gggtttaccc gtcctccgct gtgtgcagga gaagctgcct tgcgtcgggg
     1621 tctggaacac gcagatggtg atcacagctc tctgatccag gtctatgaag cctttgtaca
     1681 aagtggagca gatgagactt ggtgtcaggc ccggggtcta agctgggagg cgttatgtca
     1741 agcccgcaaa ctccgagcag agctcctgga actcatgcaa cggattgagc ttcccctgtc
     1801 cttgccggcc ttcggctccg agcagaatcg cagagacctt cagaaagcgc tgctgtcagg
     1861 atacttcctc aaggtggccc gggacaccga tgggacagga aattacttgc ttctcaccca
     1921 taaacatgtg gcccagctgt caccatactg cgtctaccgt aaccgcagga ctccagccca
     1981 gccacccaca tgggtgctgt accaccgctt ctccatctct aaagacaact gcctttgtac
     2041 agtctctgag attcagcctg agatgctggt ggagcttgcc cctccatact tcctgagtaa
     2101 cctgcccccc agtgagagca gagacctcct gaaccagctg agagaaggaa cagagccatc
     2161 agcagcagtg actgaaactg cttctcctca ggaatatgga gatggctgtg ttctgcagtg
     2221 agctgcctaa ggaacctcac cacacagtgg acttagagac ccaaagtgta gggtcagaca
     2281 cactctggaa cgccagaaat gttaggaggg gaggggacag agagccacag ttcagaacaa
     2341 ggcaggcctt tccttctctg tccatgggcc aggggcaaat gctgcttact ccacccacga
     2401 cttaccccac acaaccttgt ctccttgggg gctggagaga tgactcaggg attaagagca
     2461 ctcactgtct gctcttccag aggtcgtgag ttcaattcct agcaaccaca tggtggctca
     2521 tgaccatctg taattggatc cagtgctctc ttctggtgtg tcagggacaa tgtgttcata
     2581 ctcattaaat acataaataa atcttt
//
