LOCUS       NM_001305280            4029 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus dpy-19 like 4 (Dpy19l4), mRNA.
ACCESSION   NM_001305280 XM_001072543 XM_216331
VERSION     NM_001305280.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4029)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Mar 7, 2015 this sequence version replaced
            XM_216331.8, XM_001072543.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.20615.1,
                                           SRR26643299.21973.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               JAXUCZ010000005.1  29207995-29208132   c
            139-246             JAXUCZ010000005.1  29203022-29203129   c
            247-371             JAXUCZ010000005.1  29196862-29196986   c
            372-462             JAXUCZ010000005.1  29193932-29194022   c
            463-584             JAXUCZ010000005.1  29193539-29193660   c
            585-730             JAXUCZ010000005.1  29192849-29192994   c
            731-854             JAXUCZ010000005.1  29186380-29186503   c
            855-989             JAXUCZ010000005.1  29183130-29183264   c
            990-1121            JAXUCZ010000005.1  29180722-29180853   c
            1122-1220           JAXUCZ010000005.1  29180526-29180624   c
            1221-1294           JAXUCZ010000005.1  29179996-29180069   c
            1295-1453           JAXUCZ010000005.1  29174971-29175129   c
            1454-1573           JAXUCZ010000005.1  29171323-29171442   c
            1574-1694           JAXUCZ010000005.1  29167394-29167514   c
            1695-1751           JAXUCZ010000005.1  29164304-29164360   c
            1752-1834           JAXUCZ010000005.1  29163276-29163358   c
            1835-1967           JAXUCZ010000005.1  29160070-29160202   c
            1968-2126           JAXUCZ010000005.1  29154432-29154590   c
            2127-4029           JAXUCZ010000005.1  29151129-29153031   c
FEATURES             Location/Qualifiers
     source          1..4029
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q13"
     gene            1..4029
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /note="dpy-19 like 4"
                     /db_xref="GeneID:297824"
                     /db_xref="RGD:1305828"
     exon            1..138
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..2291
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /note="protein dpy-19 homolog 4"
                     /codon_start=1
                     /product="probable C-mannosyltransferase DPY19L4"
                     /protein_id="NP_001292209.1"
                     /db_xref="GeneID:297824"
                     /db_xref="RGD:1305828"
                     /translation="MAKEEGSSVEPRQRKKQRTSGSQEAKAEKIRRTTAPERAPKYVS
                     FQRFAKIFIGCLAAIISGMMHVFYLSAYHERKFWFSNRQELEREITFQGDSAIYYSYY
                     KDMLKAPSFERGVYELTHNNKTISLKTINAMQQMSLYPELIASVLYQATGSHEVIEPV
                     YFYIGIVFGLQGIYVTALFVTSWLMSGTWLAGMLTVAWFLINRVDTTRIEYSIPLREN
                     WALPYFACQVAALTGYLKRNVNTYAERFCYLLLSTSTYTFMMVWEYSHYILFLQAVSL
                     LLLDIFSVQQSDKVYEVYKIYIFSLFLGYLLQFENPALLVSPLLSLTGAFMLIKCFQL
                     NVKKGTFVAKVIKVFEFYLLCTLPVTLNVIVKMFVPHKENEHVLKFLEVKFGLNMTKN
                     FTLNWLLCQESLQAPSQDFFLRLTQSSLLPFYVLVLTICLLSMTQVTFRRMSGKSKKE
                     TATLEDGRIGERPEIIYHVIHTLLLGSLAMLVEGLKFIWTPYVCMLAAFGVCSPELWM
                     TLLKWLRLRTVHPVLLALILSMAVPTIIGLSLWKEFFPRLITELTELQEFYDPDTVEL
                     MTWIKRQAPVAAVFAGSPQLMGVIKLCTGWTVTSLPLYSDDDLLKRNENIYQIYSKRS
                     AEDIYKILTSYKANYLIVEDAICNEMGTTRGCRVKDLLDIANGHVVFEEGDKLTYSKY
                     GRFCHEVKINYSPYVNYFTRVYWNRSYFVYKVNTVISFQS"
     exon            139..246
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            247..371
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            372..462
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            463..584
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            585..730
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            731..854
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            855..989
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            990..1121
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..1220
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            1221..1294
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..1453
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..1573
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            1574..1694
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            1695..1751
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            1752..1834
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            1835..1967
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            1968..2126
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
     exon            2127..4029
                     /gene="Dpy19l4"
                     /gene_synonym="RGD1305828"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggaagtggg ggcgcggcag ccgggagctg gccggggcgg ccgcggggtt tggattcgcg
       61 gaggtttggg agactccggg ccgctcggga acaggagggc cacccgggac tctgcggaga
      121 cgatggcaaa ggaagaagga tcatctgtag aaccccgcca aaggaagaag caaagaactt
      181 caggaagtca ggaagccaaa gcagagaaga tccgcagaac cacagctcct gaaagagctc
      241 caaaatatgt ttcatttcaa cgttttgcaa agatcttcat tggctgtctt gcagccatta
      301 ttagtggtat gatgcatgtt ttctacctgt cggcttacca cgaacggaaa ttctggtttt
      361 ccaacaggca ggaacttgaa cgagaaatca catttcaggg tgacagtgcc atttattact
      421 cctattataa agacatgtta aaggctcctt catttgaaag aggtgtttac gagctgacgc
      481 acaataacaa aaccatctcc ctgaagacta tcaacgccat gcaacagatg tctttgtacc
      541 cggaacttat tgccagtgtg ctctatcaag caactggtag ccatgaagtg attgaaccag
      601 tgtatttcta cattggcatt gtttttggat tacaaggaat atatgttaca gctttgtttg
      661 ttacaagttg gcttatgagt ggcacgtggc tagcaggaat gcttaccgtt gcatggttcc
      721 taattaacag ggtggacaca acaagaatcg agtactccat tcccttaaga gaaaactggg
      781 ctctaccata ttttgcatgc caagttgctg cacttacagg ctatttaaag agaaatgtaa
      841 atacgtacgc agagaggttt tgctacttgt tgctgagtac ctcgacgtac acgttcatga
      901 tggtgtggga gtacagccac tacatcctgt ttcttcaagc agtctccctg ctgctgttag
      961 acatcttctc agtgcagcaa agcgacaagg tttatgaagt atataaaatc tacatatttt
     1021 ctctcttcct tgggtattta ctgcagtttg agaatccagc tttattggta tctcctttat
     1081 taagcttaac aggagcgttc atgcttatta agtgctttca gctaaatgtg aaaaaaggaa
     1141 cgtttgtggc caaagtaatc aaagtgtttg agttttactt gttatgtact ctgccagtga
     1201 ccttaaatgt tatagtaaag atgtttgtcc cacacaaaga aaatgagcac gtgctgaaat
     1261 ttcttgaagt aaaatttgga ctcaatatga ctaagaattt tacattgaac tggctccttt
     1321 gtcaagaatc tctccaggca ccgtcccagg attttttttt acgattgaca caatcttccc
     1381 tattgccatt ctatgtttta gtgttaacta tctgtcttct ttctatgaca caagttactt
     1441 ttaggaggat gagtgggaag tccaagaaag agaccgcaac tcttgaagat ggaagaattg
     1501 gagagaggcc agagatcatt taccatgtaa tccacacgct tttgctgggc tctctcgcaa
     1561 tgcttgtgga aggcttgaaa ttcatttgga ctccttacgt gtgcatgtta gcagcatttg
     1621 gtgtatgttc ccccgaactt tggatgacac ttttaaagtg gcttcgatta agaactgtac
     1681 acccagtatt gttggctctt attctgagca tggctgtgcc cactattata ggtcttagtt
     1741 tgtggaaaga gttttttcca cgattaatta cagaattaac agaactacag gaattctatg
     1801 atccagatac agtggaactt atgacctgga taaagaggca agctccagtt gcagctgtgt
     1861 tcgcaggaag cccacagttg atgggtgtga tcaagctatg cactggatgg actgtgacaa
     1921 gcttgccact ttacagtgat gatgaccttc tcaagaggaa tgaaaatatt taccaaatct
     1981 attcaaagcg atctgctgag gatatttata aaatactgac atcttataaa gctaactacc
     2041 taattgtaga agatgccatc tgcaatgaga tgggaaccac gaggggctgt agggttaaag
     2101 atttgttaga tatcgcaaat ggacacgtgg tttttgaaga aggtgacaaa ttaacctatt
     2161 caaaatacgg acgattttgt cacgaggtca aaattaacta ctctccatat gtgaattact
     2221 tcactagagt atactggaac agatcctact ttgtatataa agtcaacact gtgatttcct
     2281 tccaatcttg aacaataaca gagccttcat ttcaaagaca tgttacttga agtaaaatac
     2341 aattttcttg gacctacaga gtttcttaca gataagagtg tggtatctga aatgctgcta
     2401 ttcctcccca cgcctgctga ctcctgggtt tagagttttc ttggaagtag gtgatgagat
     2461 gttgatgtct tttagtaaaa tgtcaagtcc accactgcat cttgctggcg gccttctttc
     2521 ttagcacatg acttaaagcc ttacctgttg catcatctca taccttactc tatagtatcg
     2581 atctttattt gaatattttc caaggtcagt gttaactttt aattaagtac ttaatgtgat
     2641 ttaattctcc aatataagag aaaattctcc aaggaagttt ttaacagatg taaattttct
     2701 acaattaaaa ataattgaaa aaaaaattga aatgttagtt aaaaatatga gacacttaaa
     2761 ttaaaatgga aataacataa aggaaggatt ttatgatact gttcctgtca tctgctgctt
     2821 aagtcgtgag cacattctta gtgaaacgtg tttcatgact agtgagtgac tgccttttct
     2881 catttatgtc cactaagtta ataacaattt aatcatgcta acacagtaac tggtgttgat
     2941 acatacatat gtaaatgaac attgaaaata atgttatatt gcttggttgt ggagcataca
     3001 atctaatcac attgtaacgg acatattaac acaataataa tgtgcacact aacacacgtc
     3061 agtttctgga ggtgtatgcg gatgctttta aatagaagag caaactgaga gttaaattta
     3121 attctcaaca gttcagagta taaatgctac attccttcgt gtattttcat ttttgtacca
     3181 ttaaaagaaa ttgtaagcca gtgtggtggc tcatgccttt aatcccagca cttgggagtc
     3241 aaaggcaggt gaatctctat gaatttgaag ccagcctggt ctacatagtg agttccagga
     3301 cagcctggag agctacataa gtaagaccct gtttttttgg ggggagaagg gaagaaattc
     3361 taaattaata tggcctctta aagagattca ggataaaacc tgtagagaaa tggtttttaa
     3421 taagatgcat atttattttt acattataca gttgttttgt gaaaaggtcc tataatttta
     3481 tttactagaa tggtataaat tgcattttta agaactccaa attaggaaaa aaatttcctt
     3541 ttttttttgt aaaatatatg tacgtttttt tttaagtatg tgcacttaga gtaacttctg
     3601 gagcttgact gacatctgtc atatgctcct gtaaatggtc ctgtacacta tttttcatgc
     3661 ttattttgac aagcagctat ggtggtgtgt ctcagatgga ctctgaatat cttggtagtc
     3721 gtcacaaata tttaacatcg agctttatgg aaaattacca gctagtaaag tacacactgc
     3781 gcagtcatgg tcattcttgc aatcagggca tgcagaaaca gcttccgtgt tataaaggag
     3841 gagggacaac cgtgtttctc ttgtaatggt ttttttgcag ttcccttgta aaatgaattg
     3901 aatttttatt gacatgacag catgtgctaa gttactttta gtttttgttt tgtttactgt
     3961 atcagtaagc tgcttttgct tctgtcaatc tatttttttt ttaattaaaa gttcataatt
     4021 agtaccagg
//
