LOCUS       NM_001135835            7610 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus dpy-19 like C-mannosyltransferase 3 (Dpy19l3),
            mRNA.
ACCESSION   NM_001135835 XM_218514
VERSION     NM_001135835.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7610)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Aug 31, 2012 this sequence version replaced NM_001135835.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-192               JAXUCZ010000001.1  97554041-97554232   c
            193-334             JAXUCZ010000001.1  97552440-97552581   c
            335-468             JAXUCZ010000001.1  97549344-97549477   c
            469-559             JAXUCZ010000001.1  97528338-97528428   c
            560-681             JAXUCZ010000001.1  97525777-97525898   c
            682-827             JAXUCZ010000001.1  97524028-97524173   c
            828-951             JAXUCZ010000001.1  97521662-97521785   c
            952-1086            JAXUCZ010000001.1  97520467-97520601   c
            1087-1218           JAXUCZ010000001.1  97516107-97516238   c
            1219-1320           JAXUCZ010000001.1  97513648-97513749   c
            1321-1394           JAXUCZ010000001.1  97511049-97511122   c
            1395-1553           JAXUCZ010000001.1  97510744-97510902   c
            1554-1676           JAXUCZ010000001.1  97509088-97509210   c
            1677-1788           JAXUCZ010000001.1  97508555-97508666   c
            1789-1845           JAXUCZ010000001.1  97507853-97507909   c
            1846-1928           JAXUCZ010000001.1  97503761-97503843   c
            1929-2061           JAXUCZ010000001.1  97495939-97496071   c
            2062-2220           JAXUCZ010000001.1  97494230-97494388   c
            2221-7610           JAXUCZ010000001.1  97487206-97492595   c
FEATURES             Location/Qualifiers
     source          1..7610
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..7610
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /note="dpy-19 like C-mannosyltransferase 3"
                     /db_xref="GeneID:308519"
                     /db_xref="RGD:1308334"
     exon            1..192
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            193..334
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     CDS             229..2382
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /note="protein dpy-19 homolog 3; dpy-19-like 3"
                     /codon_start=1
                     /product="probable C-mannosyltransferase DPY19L3"
                     /protein_id="NP_001129307.2"
                     /db_xref="GeneID:308519"
                     /db_xref="RGD:1308334"
                     /translation="MMMYIRQRKETKPVEVSEDFPSPKEDVKLEKKLPSGCASGRFWK
                     ILSSAVGGTVALCIGLLTSVYLATLHENDLWFSNIKEVEREISFRTECGLYYSYYKQM
                     LQAPTLLQGFHGLIYDNKTESMRTINLLQRMNIYQEVFLSVLYRVLPIQKYLEPVYFY
                     IYTLFGLQAVYVTALYITSWLLSGTWLSGLLAALWYVTNRIDTTRVEFTIPLRENWAL
                     PFFAIQIAAITYFLRPNLQPLSERLTLLAIFVSTFLFSLTWQFNQFMMLLQALVLFIL
                     DSLDMLPAVKATWLYGIQISCLLLVCMLQFFNSMILGSLLISFNLSVLIVRKLQKNLK
                     TGTFLIRIWKLLLHLLLVFCLTLFLNNIIKKILNLKSDEHIFKFLKAKFGFGATRDFD
                     ANLYLCEEAFGLLPLNTFQRLSETLLFYAYMFVLLVTVVTASVVAFHNLSDSTSLQPV
                     DQTRKRVVDLKPEAAYNLIHTILFGVLALSTMRMKYLWTSHMCVFASFGLCSSEIWEL
                     ILRLVHLCNPKRIWVMRYSVPVLTLLCLCCKSWPGMMDELSELKEFYDPDTVELMNWI
                     NSNTPRKAVFAGSMQLLAGVKLCTGRTLTNHPHYEDKSLRERTQAVYQIYAKRSPEEV
                     HALLRSFGTDFVILEDSICYERRHHRGCRLRDLLDVANGHEMDGPGESDPDLRPADHP
                     RFCEEIKRNLPSYAAHFTRVFQNKTFHVYKLSRNK"
     exon            335..468
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            469..559
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            560..681
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            682..827
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            828..951
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            952..1086
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1218
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            1219..1320
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            1321..1394
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            1395..1553
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            1554..1676
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            1677..1788
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            1789..1845
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            1846..1928
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            1929..2061
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            2062..2220
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
     exon            2221..7610
                     /gene="Dpy19l3"
                     /gene_synonym="RGD1308334"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgccccttc ccggggctgc agacgccccc caggcccatc cttgcaccgc accgcacatt
       61 gccggcgaca gctgggtcct ccgggtcttc aactcgctgt agcccgtaaa gtgggcgcgt
      121 ccccaaggcc tgggtgcttt gcgtgcttcc ttgccaatcc cgggtagccc gcgaggactg
      181 ctgaggccgc aggggtggtt ggaagaacaa tgcctatgag tctttgacat gatgatgtac
      241 atccggcaaa gaaaagagac aaaacccgtt gaagtttctg aggattttcc gtcaccaaaa
      301 gaagatgtga agttggaaaa gaaattgcca tctggttgtg cctctggaag gttctggaag
      361 atcctgtcat ctgcagttgg cggaaccgtg gccctttgca ttggacttct aacatccgtg
      421 tacctggcca ccctacatga gaacgatttg tggttttcca atataaagga agtagagcga
      481 gaaatctcat tcaggacaga atgtggactg tactattctt actacaagca gatgctgcag
      541 gctccgaccc tcctgcaagg tttccatggc ttaatctatg acaataaaac cgaatccatg
      601 aggacgatca acctccttca aagaatgaat atttaccaag aagttttcct cagtgtttta
      661 tacagagttc tccccataca gaaatatcta gagcctgttt atttttatat ctacactctt
      721 tttgggctcc aagcagtcta tgtcacggcc ctttatataa ccagctggct ccttagtggc
      781 acctggctgt caggcctgct ggcagctctc tggtacgtca ccaacagaat cgacacgacc
      841 agagttgagt tcaccatccc gctgagggag aactgggctc tgcctttttt tgcaattcag
      901 attgcagcaa ttacctactt cctgagacca aacttgcagc ctctttctga aaggctgacc
      961 cttcttgcca tcttcgtatc aacttttctc tttagcctga catggcaatt taatcagttc
     1021 atgatgctgc tgcaggcgct ggtgctgttc atcctggact ccttggacat gctgccagcc
     1081 gtgaaggcca cctggctgta cggcatccag ataagctgcc tgctcctcgt ctgcatgctt
     1141 cagtttttta actccatgat cctcggatcg ctgctcatca gttttaacct ctcagtatta
     1201 attgtaagaa aacttcagaa gaacctgaag actggaacct tcctgattag gatttggaaa
     1261 ctattgttgc atttgcttct agttttctgc ttgacacttt ttctcaacaa cattattaag
     1321 aaaattctta acctgaagtc agatgaacac atctttaaat ttctgaaggc caagtttggg
     1381 tttggagcaa caagggattt cgatgcaaat ctctatctgt gtgaagaagc ctttggcctc
     1441 ctgcctctca acacattcca aaggctctca gagacactgc ttttttacgc gtacatgttc
     1501 gtcctattgg tcacagtggt cacagcgtcc gttgtggcct ttcataatct cagtgactcc
     1561 acaagtctgc agcctgtgga tcagacaaga aagcgtgtgg ttgacctgaa gccagaagcc
     1621 gcatacaacc tgatccacac cattctgttt ggtgtcttgg cgttgagtac gatgaggatg
     1681 aagtacctat ggacctccca catgtgtgtg tttgcgtcct tcggcctgtg cagctctgag
     1741 atctgggaac tgattctgag gctggttcat ctctgcaacc cgaagaggat ctgggtcatg
     1801 cggtactcgg tgcccgttct caccctgctg tgcctgtgct gtaagtcctg gccaggaatg
     1861 atggatgaac tctccgagtt gaaagaattc tatgacccag atacagtgga actgatgaac
     1921 tggattaact ccaatacacc gaggaaggcc gtgttcgctg gaagcatgca gttgctggct
     1981 ggagtcaagc tgtgtacagg acggacgctg accaaccacc cacactacga agataaaagt
     2041 ctgagagagc ggacccaggc ggtttatcag atatatgcga agaggtcccc agaggaagtg
     2101 cacgcgctcc tgcggtcctt tggcaccgac tttgtgatcc tggaagacag catctgctat
     2161 gagcgcaggc accacagggg ctgccggctg cgtgatttgc tggacgtcgc caatggacat
     2221 gagatggatg ggccaggaga gagtgaccct gacttgagac ctgcagacca ccctcgcttc
     2281 tgtgaagaga ttaaaaggaa cctgccgtcc tacgcagccc acttcactag agtgttccag
     2341 aacaagacat tccatgtcta caaactgtcc agaaacaaat aaccgtgtcc gttcttaaac
     2401 cacagtgcat cgacagctgg tggagcccgt gtctgtgagt caggagcaag acttgaatgc
     2461 tggggttgca gacagcctgc agacaagtct tgccaccatc ggatacgcct tccgctagca
     2521 tcagccttct ccgccgtcct gtctctgtct tttctctgag tgttcttagc ctcacgagtg
     2581 tacctggccg aggctggcca gggatgctgt tcctgaggga gtgatgtgtg actcactggg
     2641 tggcctggga atgaaatgct ggtggttgcc agtaaccctg agcccgctgt gagcgagtgg
     2701 accagctgca cacttcagtc accgaccctt caccactgag accgcttggt ggctttttaa
     2761 cagttgattg tcctgtctcg ttaaaatttt acaccatttc cggtttacca tgctttcaca
     2821 tgtgtgaaga aacagattat tttagatctt tgaatcttaa atattccact tgtgctctga
     2881 aatgtcacat gttcagtcgc gtgtgacaca tttagagtgt gtgcttgttt taattctggg
     2941 cacagcaatc agggtgctac caggccaggc atggtgacac actcctcctt taatcccagc
     3001 acttgcaggc aggggcaggg gcaggggcag gggcaggggc aggggcaggg gcaggggcag
     3061 gggcaggcaa atctcctgag agtttgaggc cagcctattc tgtatagtga gttctgggcc
     3121 agccatggct atgtgacaag acatagcctc atcttaagaa agcaaagtgt gtccaggctt
     3181 acgctagaag tctttgaggg gaatccatcc atttttaatc tctctcgcaa gtaaggtagt
     3241 tctgcttcac ttcttactca tttcagttaa ccgggtttgc aaagcctggt aaactctttg
     3301 tgttttagcc tttgtagttt ttctagccta caaacttgca aagtctgagg cgttttagat
     3361 gctgtgcctt gactcctaga gttcatgtgg cacttcattc tctctgactt ctggccgcta
     3421 gtcttccttc ttgccccgga gacatcgcac tcctcctcct catggggtga ccaagagcct
     3481 ccaagccaca cgggatttaa gcagcagaga ggggtggtga aagctgagag cttttgacga
     3541 ttgcttttat aattcacttc tgatggtggg ggcatgtaaa agctgatgag gcaggcacat
     3601 tgtccactta attaaatcaa gatagctaat gaaattaact ttccctccca ctcctgccat
     3661 ttggaagtga tttaaatgtt tctcctcaca agttagtgtg ataaatcccc ctcgggcatc
     3721 ggcagagagc atcgcagaga gcctcgcgtg ctccgatggt caccctttgg ttgctgcttg
     3781 ctgcttgcgt tcaaaaatgt gttccattgt ctcatcaggt gtggagtttt tatgtaaaac
     3841 tcacttaaat aagacatcag cagccaggtt gttaaattaa gccattggaa ctttggaatc
     3901 ctgccatctc tggacctctt aatgaggttg gagaccactg cagtttgggc taacacaagg
     3961 aaacgtgttg gccaatgcta aaagtttaat gaagctgccg tgcctgccgc cgcctcgggc
     4021 actgatggaa cactcccggc cagtgcctta cccttaagga agagcaagca caggtaaggc
     4081 atacggcagc gggacctggc gacagtcact cgtgggtgag tttgcattcg tgttaaacat
     4141 tcctgtgtgc gtttgtctaa ccgcttggcg tttggtgtcc tgtgatccaa gagccgtgga
     4201 cttaaacttg gatgctcgtc cctaccgtgg taacattcat gctagtcagc gctctgtctc
     4261 cacagcacca ttgctgccaa ccacagtgag aagtgccaac aaccagtctt cccgcaggca
     4321 ctctccccgt gacactgtga catgtacagg acaatgttag aacaaaatgt ttctttaaga
     4381 ataaattata tattttaaaa aatagttaaa atatttgatt aaagtaatta gactttatcc
     4441 atcttataaa acactgcctc agtatccccg ataagtctgc ttactgcctg tagcaacctg
     4501 gccacaaaaa tcttgaacca actcatcttg gaccctgcct aatttaagat aaatcctcag
     4561 tctgcctctg tgtagcttgt cccaggcttt cttagctgca acattaactt gttcataaac
     4621 agccgggtca aaaacagccg ggtcaaaatt tagctgttga ggtctcacat actgtccctc
     4681 tcctgctagc atctgaaaca caataggtat ctgttgtggt tgattgatct ctgcagtgtt
     4741 ttgacactgc tcagcaaatt ctgatttcca taataaaaaa tctcctccag acaagcacgc
     4801 ccttgccagt tgttttcagt ccccaggagg gagggcctcc gcggaccaga ctctcatagc
     4861 ctgagtaaat gggggctgtc ggttggccac actgtgcaca agcagatttt aatcccttta
     4921 actgtttaaa tgcaagaggt ggataaactc tgactcttgc cttgaggact gacctgttct
     4981 ataactggaa atgcaaagtg aaatccctga acatcctctc ctctcagcag cctctttcag
     5041 ggtcactgta agggagataa aaggctctgc agggaaggcc ggctcccaca tggcttcctg
     5101 accgctgctg caactggcag ctctgcctct gtgtctgagg gggtccagtc cagctcgggg
     5161 ttttacaggc tctcagctga ggaacccact ctgaggatcc caggatctcc ccttgagcct
     5221 gtgagcttgt agtgtttgca cagacagcaa agtagaagca tgtcgccgct gctggatttt
     5281 ctctgtaact aacttgtcct tgaaaggaat tttgagttct gccaagacaa caagtggcaa
     5341 agaattctcc tccctataat acctagcgcg gcttcctctt ccagatgctc agtctcccac
     5401 atctagggtc tcctccctct cccccagggg aagctcaaac actgcttcca tacacaaagg
     5461 ctcagctgca aaagcaggca ccttggcttc attctcctct tcctcctttg tcagagcatc
     5521 cccagatggg tgctgcgtcc ctgtaaccca cttctccctc atgtttagaa tctaaactat
     5581 ctccgttagt aatcgagatc cagagactaa agatatcaac aggcatttta cttggtccat
     5641 gcacatcata atagatttga agtcttttcc caaccttttc tttcccacat tgttaaatgt
     5701 agtagtacct aattaaaatc ttaaattgat ccccagtggt gactcatcct cgatacctga
     5761 cccagtgctc tgggtttcca aaggaaagac acacacacac acacacacac acacacacac
     5821 acacacacac acacacacac atacacacac acacacacac acagagcctt tatgttttga
     5881 taagcctaaa acagctcaaa ggctgggcca cttgctaacc tccacatggc taatccacct
     5941 ccctccatta ttcccaagtt attatttcct aagtcctata ctccatcgtg gctgctgttg
     6001 ggctgtcctt cctacatggt ggctatgctg tctgtcctgc accttctcag gcatcggcgt
     6061 cttccctctt ccacctcttc tggcattgct gacctccttc ctctctacgt tggtcctaaa
     6121 ggtcccacct ctgtctgcct tgcccagcca ttggctgctg caagtttatt tgagggagtg
     6181 aggatgatta taggaaagac agaagactca gagacaaaag ttagaattgg gagggctacg
     6241 ggtcaatacc acatcagcct caagtttgct tttcttggcc tttttatact tcacagtgcc
     6301 atgggagaca aagtcacaag ctagcagaaa cgactgccat ttacacagga tatccgttcc
     6361 catcaggagg cctttctctt ccttccacca agattaatag aacattcagc cccttgcctt
     6421 gaccctcaaa tgtattctct catcgttcaa tgcatcagca ggccaggaaa tctgccggca
     6481 gaccctgacc tgccttgacg ctgccaggca agcaggctgt cgcagaggca gacgaaacgg
     6541 ctcctgacgc tctctgtaac ctaatctctc agcaaatcat gtttgataat ttaagctctg
     6601 gtgaggagtc tagcttatga ccttgtcttt gagcacacgg gaggaaggta gatacaccct
     6661 tggctacagc ccccacactg caagcagaag ccagtgcctg ccgtagccct caccttctgc
     6721 tgtgtaggcc ctggggactg ttagtaatag tgttcagttg tggctctgaa gcactaggcc
     6781 ttgcttctga gttctcagaa gaacctctaa gtacaacaga agtgctctta attaactcca
     6841 cttctgattc ctcggagcct cgagtctcca gcagtcttgg gagccacctg ctgcaatccg
     6901 gcatgtggcc gctgccttgc gtctccactc ctggtgccaa caggcccctg aggcagccca
     6961 ctcaaggtgt ccgggtgcac cttctgctgc tgatggtgag cttggagtcc caaccacaag
     7021 aggaccaggg gtgtggcttg agtgtttacc tggcattgca caaaccctag gcttcacccc
     7081 cggcactgca gcagacagaa aaaggaataa tctagcaaaa gttaaaatca aatgctttga
     7141 taaggtgggt tgctcctgtc tgcaaggaca gttcggtggt taagtgcgtg tgtcaccttt
     7201 atagcttggt tctcagaacg atgtctgtca gcacacagct gcctacaact ctggttccac
     7261 tcagcgccca ctcgacgcct tcttacactg tcaaataagt aaaagtaaaa ggaagacctt
     7321 tatttttaaa taaaaacgcg gtcagaaagt ttaatagaca ttgaggggtt taaaatgaag
     7381 gagatgaatg agcttaaatc ccttcgtaga attaccctac gtgctcaccc caccttttca
     7441 acacctgagc tggaagcggg gcaggtggct cggaggtaga gagccgggcc gttaccgggt
     7501 aggggcattg cctgtttgtg gcctctgttg gaaaaaacct taaaaagagc gtttgtaatt
     7561 tgctgaattg tgtggagatt ctatactaaa taaagctctt ttcaataatc
//
