LOCUS       NM_001398885            1465 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus developmental pluripotency associated 4 (Dppa4),
            transcript variant 2, mRNA.
ACCESSION   NM_001398885 XM_001063552
VERSION     NM_001398885.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1465)
  AUTHORS   Nakamura,T., Nakagawa,M., Ichisaka,T., Shiota,A. and Yamanaka,S.
  TITLE     Essential roles of ECAT15-2/Dppa2 in functional lung development
  JOURNAL   Mol Cell Biol 31 (21), 4366-4378 (2011)
   PUBMED   21896782
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Dec 27, 2021 this sequence version replaced XM_001063552.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.69001.1,
                                           SRR26643295.43190.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-93                JAXUCZ010000011.1  66041662-66041754   c
            94-211              JAXUCZ010000011.1  66039352-66039469   c
            212-378             JAXUCZ010000011.1  66038099-66038265   c
            379-429             JAXUCZ010000011.1  66037944-66037994   c
            430-724             JAXUCZ010000011.1  66036111-66036405   c
            725-920             JAXUCZ010000011.1  66034607-66034802   c
            921-1465            JAXUCZ010000011.1  66033256-66033800   c
FEATURES             Location/Qualifiers
     source          1..1465
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q21"
     gene            1..1465
                     /gene="Dppa4"
                     /note="developmental pluripotency associated 4"
                     /db_xref="GeneID:685378"
                     /db_xref="RGD:1595070"
     exon            1..93
                     /gene="Dppa4"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..954
                     /gene="Dppa4"
                     /note="isoform 2 is encoded by transcript variant 2;
                     developmental pluripotency-associated protein 4"
                     /codon_start=1
                     /product="developmental pluripotency-associated protein 4
                     isoform 2"
                     /protein_id="NP_001385814.1"
                     /db_xref="GeneID:685378"
                     /db_xref="RGD:1595070"
                     /translation="MEPSGSKKGRAEEPREEVECQMSSQPSTSSAKTKATGKKQRKSE
                     KDDGCKPEEKSAQDPETPGHARRKVPVPPFPQHLPPVNLIHRDVLRAWCQEMKLSSKG
                     QKLDAYKRLLARAFPDQMPELKNVPDSAKEARLKMPRKKMKTEPGEESQVTVPLEIVT
                     VPEEQIPALVDPPVLYEEVSTTVVTTSASEAVLASWARIAANAKKLEAVPSNATSETY
                     GEMWCVVHGTSLPATSSGWVRLQFHAGQAWVPDKKGKAIALFLLPACTFPPPHLEDNM
                     LCPKCVHKNKILTKSLEG"
     exon            94..211
                     /gene="Dppa4"
                     /inference="alignment:Splign:2.1.0"
     exon            212..378
                     /gene="Dppa4"
                     /inference="alignment:Splign:2.1.0"
     exon            379..429
                     /gene="Dppa4"
                     /inference="alignment:Splign:2.1.0"
     exon            430..724
                     /gene="Dppa4"
                     /inference="alignment:Splign:2.1.0"
     exon            725..920
                     /gene="Dppa4"
                     /inference="alignment:Splign:2.1.0"
     exon            921..1465
                     /gene="Dppa4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgaaggag gccataggtc atttggaagc taggagaact ttctttcgga ggtctcatct
       61 aaattcaaga tggagccgtc tggaagcaag aaggggcgtg cagaggagcc aagggaagaa
      121 gtggaatgcc agatgtctag ccaaccgagc acgtcttctg caaagactaa agcaacgggg
      181 aagaaacaaa gaaagtcaga gaaagatgac ggttgtaaac cagaggagaa aagtgcacaa
      241 gatcctgaga ctccagggca cgctcgtagg aaggtacctg ttcctccttt tccacagcat
      301 ctgccccccg tgaacctgat tcaccgagac gttttgcggg cctggtgcca ggagatgaag
      361 ctgagcagca aaggccagaa attagatgct tataaacgac tccttgcaag ggctttccca
      421 gatcaaatgc ccgagttgaa gaatgttcct gactcagcca aagaggccag gttgaagatg
      481 cctcggaaaa aaatgaagac ggaacctggg gaagagtctc aggtgacagt tcccctggag
      541 atcgtcactg taccagagga gcagatacct gctctcgttg atcctcctgt gctctatgag
      601 gaagtcagca ccacggtggt aactacatct gcctcagagg cagtgttggc atcttgggcc
      661 agaatagcag ccaatgctaa gaagttggag gcagtgcctt ccaatgcaac atcggagacc
      721 tatggggaaa tgtggtgtgt ggtgcatggg acaagccttc ccgcaacctc aagtggttgg
      781 gttcgactac agttccatgc tggacaagcc tgggtacccg ataagaaagg gaaagcgatt
      841 gccctcttcc tgcttccggc ctgcacattt ccgcccccac acctggagga taacatgctg
      901 tgccccaagt gtgtccataa gaacaagatc ttaactaaga gccttgaagg ataaagaacg
      961 gatctcttaa ggttggacag gctactggca tcactcactc ttgtggcgtg atcagcagaa
     1021 ctgcagctga cactgagact gatggaaacc cacacctttg aaggtgccca tctcacccag
     1081 gagtgatggg atattgtaag ttagttgatg cttaagtaca agcagtttag acaaagccac
     1141 ggaggccacc aaaaggtcct ctgctcattg tgatgactga acactgggag tggcctcttt
     1201 ctcttgtgtg aaagtaaagt gttctatgtt tgctgcaggt aagtcctagg gcaggactat
     1261 gacatgtcca gatgtaacag ttgctagtcc tgtcaccagc acagtggggt cacagccagt
     1321 tcagtggtca actgtaaaga cttagcttgt gcctgtagcc tctgcgtgtc cccttccctg
     1381 gtttgtagtg tgatgttagt gctcagtatt tgggtttgtt ttctgctgtt gtaaaatatt
     1441 ataccaaatc tggtttgtgg ctttt
//
