LOCUS       NM_001047864             708 bp    mRNA    linear   ROD 26-APR-2024
DEFINITION  Rattus norvegicus developmental pluripotency-associated 3 (Dppa3),
            mRNA.
ACCESSION   NM_001047864 XM_001060503 XM_216263
VERSION     NM_001047864.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Nakamura,T., Liu,Y.J., Nakashima,H., Umehara,H., Inoue,K.,
            Matoba,S., Tachibana,M., Ogura,A., Shinkai,Y. and Nakano,T.
  TITLE     PGC7 binds histone H3K9me2 to protect against conversion of 5mC to
            5hmC in early embryos
  JOURNAL   Nature 486 (7403), 415-419 (2012)
   PUBMED   22722204
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Julaton,V.T. and Reijo Pera,R.A.
  TITLE     NANOS3 function in human germ cell development
  JOURNAL   Hum Mol Genet 20 (11), 2238-2250 (2011)
   PUBMED   21421998
REFERENCE   3  (bases 1 to 708)
  AUTHORS   Wossidlo,M., Nakamura,T., Lepikhov,K., Marques,C.J.,
            Zakhartchenko,V., Boiani,M., Arand,J., Nakano,T., Reik,W. and
            Walter,J.
  TITLE     5-Hydroxymethylcytosine in the mammalian zygote is linked with
            epigenetic reprogramming
  JOURNAL   Nat Commun 2, 241 (2011)
   PUBMED   21407207
REFERENCE   4  (bases 1 to 708)
  AUTHORS   Nakamura,T., Arai,Y., Umehara,H., Masuhara,M., Kimura,T.,
            Taniguchi,H., Sekimoto,T., Ikawa,M., Yoneda,Y., Okabe,M.,
            Tanaka,S., Shiota,K. and Nakano,T.
  TITLE     PGC7/Stella protects against DNA demethylation in early
            embryogenesis
  JOURNAL   Nat Cell Biol 9 (1), 64-71 (2007)
   PUBMED   17143267
REFERENCE   5  (bases 1 to 708)
  AUTHORS   Bortvin,A., Goodheart,M., Liao,M. and Page,D.C.
  TITLE     Dppa3 / Pgc7 / stella is a maternal factor and is not required for
            germ cell specification in mice
  JOURNAL   BMC Dev Biol 4, 2 (2004)
   PUBMED   15018652
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 708)
  AUTHORS   Payer,B., Saitou,M., Barton,S.C., Thresher,R., Dixon,J.P., Zahn,D.,
            Colledge,W.H., Carlton,M.B., Nakano,T. and Surani,M.A.
  TITLE     Stella is a maternal effect gene required for normal early
            development in mice
  JOURNAL   Curr Biol 13 (23), 2110-2117 (2003)
   PUBMED   14654002
REFERENCE   7  (bases 1 to 708)
  AUTHORS   Sato,M., Kimura,T., Kurokawa,K., Fujita,Y., Abe,K., Masuhara,M.,
            Yasunaga,T., Ryo,A., Yamamoto,M. and Nakano,T.
  TITLE     Identification of PGC7, a new gene expressed specifically in
            preimplantation embryos and germ cells
  JOURNAL   Mech Dev 113 (1), 91-94 (2002)
   PUBMED   11900980
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BK001414.1.
            
            On or before Sep 8, 2006 this sequence version replaced
            XM_216263.4, XM_001060503.1.
            
            Sequence Note: This sequence has been modified as follows: removed
            16 bp suspected to be vector contamination from the 3' end.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BK001414.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-708               BK001414.1         1-708
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..708
                     /gene="Dppa3"
                     /note="developmental pluripotency-associated 3"
                     /db_xref="GeneID:297576"
                     /db_xref="RGD:1310932"
     CDS             1..477
                     /gene="Dppa3"
                     /codon_start=1
                     /product="developmental pluripotency-associated protein 3"
                     /protein_id="NP_001041329.1"
                     /db_xref="GeneID:297576"
                     /db_xref="RGD:1310932"
                     /translation="MDEPSEKVDPVVNPETQMYDGSQREDEGDSPDDSEILQPETLVK
                     VMKKLTLNPSAKPTKYHRRQRVRLQVKSQPVENRSERIMREVQSAFPRRRVRTLLSVL
                     KDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN"
     exon            1..103
                     /gene="Dppa3"
                     /inference="alignment:Splign:2.1.0"
     exon            104..342
                     /gene="Dppa3"
                     /inference="alignment:Splign:2.1.0"
     exon            343..378
                     /gene="Dppa3"
                     /inference="alignment:Splign:2.1.0"
     exon            379..708
                     /gene="Dppa3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggacgagc catccgagaa agtcgaccca gtcgtgaacc cagaaactca gatgtatgat
       61 ggatctcaga gggaagatga aggggactca ccggatgatt cagaaatcct acaaccagaa
      121 acactagtaa aggtcatgaa aaagctaacc ctgaacccca gtgccaagcc gacaaaatat
      181 catcgtcgtc aaagggttcg tctccaggtt aagagccagc ctgtggagaa cagaagtgaa
      241 agaatcatga gggaagttca aagcgccttt cccaggagaa gggtccgcac tctgttgtcc
      301 gtgctgaaag accccatagc aaggatgaga agatttgttc ggattgagca gagacaaaga
      361 cagcttgaag gaaatgagag acgagatgag ccattcagat gtctctgcac tttctgccat
      421 tatcagagat gggatccttc tgagaatgct aaaatcgggc agaaccagaa gaattagggc
      481 agtttgaatt gtacaccgtc cttgccgtta acggtgccat gcagcagatg tgaaagctgt
      541 ttttttgttt aagattaaac ttttcttggt gctggggaaa tctcttctaa ttgctaacct
      601 ttaaattata taggatgtgt gacatttgga ttcatgggaa tgacagattt acccaagaat
      661 tgagcatgag tcaaagcctg gtagtttgat ttagaaggta attggaat
//
