LOCUS       XM_039088709            1566 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus developmental pluripotency-associated
            2 (Dppa2), mRNA.
ACCESSION   XM_039088709
VERSION     XM_039088709.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088709.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1566
                     /gene="Dppa2"
                     /note="developmental pluripotency-associated 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 89% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:683282"
                     /db_xref="RGD:1589201"
     CDS             1..939
                     /gene="Dppa2"
                     /codon_start=1
                     /product="developmental pluripotency-associated protein 2"
                     /protein_id="XP_038944637.1"
                     /db_xref="GeneID:683282"
                     /db_xref="RGD:1589201"
                     /translation="MSFFGQETYNQNQSEGDLDEESLVLTLVPYTEETTTEYPTELND
                     SELNDSELNVSSTIDHKPPVRSQVRYEGIKHPARTILGTCPPPTLPPINEVSRNTLRE
                     WCRYHSLSTDGKKVEVYSRLWRHSYSKQECYIPNTPLEAKKLCPKKPKMVFRGIGPPS
                     SCQSEKQENGVVEILTSAQGSTFAAWGRIAMRAAQSMSVNRCPLPSSVEAFLPETVGV
                     RWCVVHGRQCPADRKGWVRLQFHAGLTWVPDTPQRMNFLFLLPACVIPEPGVEDNLLC
                     PECVHSNNKLMRNFKMRSGKMRSDSKKNAPPPNMPP"
ORIGIN      
        1 atgtcattct tcggccagga gacttacaac cagaaccaat ctgagggaga cttggatgaa
       61 gaaagtctgg ttttaacgct ggtcccatat actgaggaga caaccacaga atatcctacg
      121 gaattaaatg attcagaatt aaatgattcg gaattaaatg tttcttcaac catagaccac
      181 aaaccaccag tccgctctca ggtgaggtat gagggaatca aacatcctgc aagaaccata
      241 ttaggcacct gtcctccgcc caccctgcct ccgattaatg aggtgtcccg gaacactctt
      301 cgggagtggt gtcgttatca tagcttaagt acggatggca agaaagttga ggtttattca
      361 agactttgga gacattcata ttcaaaacaa gaatgttata ttcccaacac acctcttgag
      421 gccaaaaagc tgtgtcccaa gaaaccgaag atggtcttca gaggaattgg gcctccaagc
      481 agctgccaaa gtgagaagca ggagaatggt gtagtggaaa ttctaacgtc agctcaaggc
      541 tccacattcg cagcctgggg aagaattgct atgagagctg ctcagtctat gtctgtgaat
      601 cgttgtcctc ttccctcttc tgtggaggcc tttctgccag aaaccgttgg agtcagatgg
      661 tgtgttgtcc atggcaggca gtgccctgca gatagaaaag gctgggttcg cctgcaattt
      721 catgctggtc tcacctgggt tccagatact ccccaaagga tgaattttct cttcctgtta
      781 ccagcctgtg ttatcccaga accaggagtg gaagataatt tgctatgtcc tgaatgtgtt
      841 cacagcaata ataagctcat gagaaacttc aaaatgagga gcggtaaaat gaggagcgat
      901 tcaaagaaaa atgccccacc accaaatatg ccaccttaga caatgtcaag attttatttc
      961 gatctgaagg gaatggaaga agcaaagaaa aaacattctg tgttccctcg aatggctaaa
     1021 aattctggac atcggtcttc agaagcccct cctcctatct cttccagcag aatggagact
     1081 ctgcagacaa atcaggatcc attactgtaa taacattctg ccgaatgtta acatctgtgg
     1141 catctcctca tggccttgtg ctggatttgc taaatgctta gctatctgag aaatgatatt
     1201 gttttagtgg gtttgttttg ttgtactttt ttaaatagat ttttatggtg gggtgttggg
     1261 gagcagtttc aaattaggaa aatagaaagt actttttata gttttttttt tccccttgat
     1321 taaggcttta tcatgtaact ctagctggcc tggaatttct aggtagacca gaaacttgtc
     1381 ttcctaagtg ttgggattta catgcttgta ccacacttcc tagccagtac tgactagtca
     1441 atatattatt gactatagta tagagttcac tgcttgtgct aaacaatctt taactgttga
     1501 caagtgtcta gagtgccata aatttgaaat catatagtat gctccctttc agattggcat
     1561 taggag
//
