LOCUS       NM_001105905             893 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus developmental pluripotency associated 1 (Dppa1),
            mRNA.
ACCESSION   NM_001105905
VERSION     NM_001105905.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jul 21, 2021 this sequence version replaced NM_001105905.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760389
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                JAXUCZ010000010.1  31518965-31519016   c
            53-141              JAXUCZ010000010.1  31516717-31516805   c
            142-199             JAXUCZ010000010.1  31515447-31515504   c
            200-252             JAXUCZ010000010.1  31506901-31506953   c
            253-364             JAXUCZ010000010.1  31504185-31504296   c
            365-398             JAXUCZ010000010.1  31501712-31501745   c
            399-893             JAXUCZ010000010.1  31499311-31499805   c
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q21"
     gene            1..893
                     /gene="Dppa1"
                     /note="developmental pluripotency associated 1"
                     /db_xref="GeneID:689975"
                     /db_xref="RGD:1586325"
     exon            1..52
                     /gene="Dppa1"
                     /inference="alignment:Splign:2.1.0"
     exon            53..141
                     /gene="Dppa1"
                     /inference="alignment:Splign:2.1.0"
     exon            142..199
                     /gene="Dppa1"
                     /inference="alignment:Splign:2.1.0"
     CDS             151..507
                     /gene="Dppa1"
                     /codon_start=1
                     /product="developmental pluripotency associated 1
                     precursor"
                     /protein_id="NP_001099375.1"
                     /db_xref="GeneID:689975"
                     /db_xref="RGD:1586325"
                     /translation="MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTDVVPTQSPLK
                     ISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQ
                     AVDVYVIEDSKVPVAH"
     exon            200..252
                     /gene="Dppa1"
                     /inference="alignment:Splign:2.1.0"
     exon            253..364
                     /gene="Dppa1"
                     /inference="alignment:Splign:2.1.0"
     exon            365..398
                     /gene="Dppa1"
                     /inference="alignment:Splign:2.1.0"
     exon            399..893
                     /gene="Dppa1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcagagcac cagaaggaga gactaacaag aagtcacttt ccctaagtac agctctttct
       61 ggctggctaa cccttcttca gctttgttca aagaccttct gtgtgacagt attagaaagt
      121 gcatttaagc cgacagagca ggtcaccatc atgatgcccc ctcaagtcct catttcaggt
      181 ctcctactcc ttctcccagc agcttggacc actactgtga catcttcaga tcagctttgg
      241 aataatcaca ccgatgtggt cccaacacaa tcccccctga agatctccac aaaggacctc
      301 tatattggaa cctctgtgtc tgctgcactc ctgatcctcc ttgcaggtgt cctggctgtc
      361 ctaaagtaca gacacagaag aaagaagatc ctggagagcg ccgttgtctt ccatggattt
      421 cagaatggag tttttcaaag cacagagcaa tcccaagctg tagacgtcta cgtcatcgaa
      481 gacagtaaag ttccagttgc ccattgaggg gccatcatcc caagactgca gaagaaagaa
      541 tgggatatga acatgctgtt acatattttc tgtcagttca tgtggctccc acttgccagg
      601 agtcatggag agagtggccc tctcgctgtc tataggccta gtcactgttt gtatagcact
      661 cattcttacc acacaccggg gagcattctg tcaaacagga acggtttaga attgcctgtg
      721 ttctttaggt gtcccaagtt gtgtctgtga gagaaaatca ttggtaatga agaaaaggga
      781 cttctatctt agttactgaa accatcaaga agagagaaat aagattttaa aataaaaata
      841 tgtaaataaa taaataatgc aagtggagag ggaaagactt aatttagaaa tgc
//
