LOCUS       XM_039112022            1285 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus double PHD fingers 3 (Dpf3),
            transcript variant X8, mRNA.
ACCESSION   XM_039112022
VERSION     XM_039112022.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039112022.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1285
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1285
                     /gene="Dpf3"
                     /note="double PHD fingers 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 17 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:299186"
                     /db_xref="RGD:1309052"
     CDS             231..1187
                     /gene="Dpf3"
                     /codon_start=1
                     /product="zinc finger protein DPF3 isoform X6"
                     /protein_id="XP_038967950.1"
                     /db_xref="GeneID:299186"
                     /db_xref="RGD:1309052"
                     /translation="MVIELGRLHRPLTPWKHAVTNPGTVLTSGCCEMRLGDQFYKEAI
                     EHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCW
                     RKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEE
                     SIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHD
                     KPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPD
                     GTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGITLQ"
ORIGIN      
        1 gcgcttccta ggtaagcgct ctaccactga gctaaatccc cagcccattt tttattttta
       61 ttatatttaa ctacttgtta ttattattat tctgagctgt ccatatccac acaggaactc
      121 agtttctgtc agaatccaaa gggaggcatc gtcacagggt aaaccttgaa gacagtccag
      181 tctgcaaacc tcctggggga catcctagat ccacagaaca acagggatcc atggtgatcg
      241 agttggggcg gttacatcgt cctttgactc cttggaagca tgcagtcaca aacccaggga
      301 ctgtgctcac ctcaggatgc tgtgaaatga ggcttgggga ccagttctac aaggaagcca
      361 ttgagcactg tcggagctac aactcgaggc tgtgtgcaga gcggagcgtg aggctcccct
      421 tcctggactc gcagactggg gtggctcaga acaactgcta catctggatg gagaagaggc
      481 accgaggccc aggccttgcc ccgggccagc tgtatactta ccccgcccgc tgctggcgta
      541 agaagcgacg attgcacccc ccagaggacc caaagctgcg actcctggag ataaaaccgg
      601 aagtagaact gcccctgaag aaagatggat ttacctctga gagcaccaca ctggaagcct
      661 tgcttcgtgg tgagggagtg gagaagaagg tggatgccag agaagaggag agcatccagg
      721 agatacagag ggttttggaa aatgatgaaa atgtagaaga agggaatgaa gaggaagatt
      781 tggaagaaga tattcccaag cgcaagaaca ggaccagagg acgggctcgt ggctctgcag
      841 gcggcaggag gaggcatgat gcggcctctc aggaagacca tgacaaaccc tacgtctgtg
      901 acatctgtgg caagcgctac aagaaccggc cgggactcag ctaccactat gctcacactc
      961 acctggccag cgaggaggga gatgaagccc aagaccagga gacccgatcc ccacccaacc
     1021 acagaaacga gaaccataga ccccagaaag gaccagacgg gacagtcatt cctaataact
     1081 actgtgactt ctgcttgggg ggctccaaca tgaacaagaa gagtggaagg cccgaagaac
     1141 ttgtgtcctg tgcagactgt ggacgctctg gaataaccct gcagtgacat aatgagaata
     1201 ttaatggtgc tgtctgttgc ttaacccgtg tgctgatata ttcatcatac atgtcagctc
     1261 atttgggagg agaaggcagg aagga
//
