LOCUS       XM_008764749            6850 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus double PHD fingers 3 (Dpf3),
            transcript variant X4, mRNA.
ACCESSION   XM_008764749
VERSION     XM_008764749.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008764749.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008764749.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6850
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6850
                     /gene="Dpf3"
                     /note="double PHD fingers 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 10 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 34 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:299186"
                     /db_xref="RGD:1309052"
     CDS             88..1224
                     /gene="Dpf3"
                     /codon_start=1
                     /product="zinc finger protein DPF3 isoform X3"
                     /protein_id="XP_008762971.1"
                     /db_xref="GeneID:299186"
                     /db_xref="RGD:1309052"
                     /translation="MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDS
                     QTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEV
                     ELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEED
                     LEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYA
                     HTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSG
                     RPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFC
                     DDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQA"
ORIGIN      
        1 tatcccgtgc tctgattggc ctgccgcttc ccctgagcga acctttagaa ctctgagaca
       61 gacaatattc tgttacattg tagcaaaatg gcgactgtca ttcacaaccc cctgaaagcg
      121 cttggggacc agttctacaa ggaagccatt gagcactgtc ggagctacaa ctcgaggctg
      181 tgtgcagagc ggagcgtgag gctccccttc ctggactcgc agactggggt ggctcagaac
      241 aactgctaca tctggatgga gaagaggcac cgaggcccag gccttgcccc gggccagctg
      301 tatacttacc ccgcccgctg ctggcgtaag aagcgacgat tgcacccccc agaggaccca
      361 aagctgcgac tcctggagat aaaaccggaa gtagaactgc ccctgaagaa agatggattt
      421 acctctgaga gcaccacact ggaagccttg cttcgtggtg agggagtgga gaagaaggtg
      481 gatgccagag aagaggagag catccaggag atacagaggg ttttggaaaa tgatgaaaat
      541 gtagaagaag ggaatgaaga ggaagatttg gaagaagata ttcccaagcg caagaacagg
      601 accagaggac gggctcgtgg ctctgcaggc ggcaggagga ggcatgatgc ggcctctcag
      661 gaagaccatg acaaacccta cgtctgtgac atctgtggca agcgctacaa gaaccggccg
      721 ggactcagct accactatgc tcacactcac ctggccagcg aggagggaga tgaagcccaa
      781 gaccaggaga cccgatcccc acccaaccac agaaacgaga accatagacc ccagaaagga
      841 ccagacggga cagtcattcc taataactac tgtgacttct gcttgggggg ctccaacatg
      901 aacaagaaga gtggaaggcc cgaagaactt gtgtcctgtg cagactgtgg acgctctggt
      961 cacccaactt gcctgcagtt cactctgaat atgactgagg cagttaagac ctacaagtgg
     1021 cagtgcatag aatgcaaatc ctgtatcctg tgtgggacct cggagaatga tgaccagcta
     1081 ctcttctgtg atgactgcga tcgaggctat cacatgtact gtttaaatcc cccagtggct
     1141 gagcccccag aaggaagctg gagctgccat ttatgctggg agctgctcaa agagaaagca
     1201 tcagcctttg gctgccaggc ctagggcccc aatcacggaa tgcagcccgc cactagagag
     1261 gctgacccga agccctattc aacccataca ggatggaggt ctcctcctgt atatgcacac
     1321 agaccaactg caaggaaaac ggataattac agaagggtat ggacaagtgg agcggtgaga
     1381 gcaaggtctc cattcacccc tcgccctacc cgcgacctcc cgcccctgca catacttcag
     1441 ccagcgcttc ctcatttctg ccagagggaa cctggcatat ttgaagagca atccagcccc
     1501 tgctctgtgg aaccttcctc atgttcacct tcacatgcat ccctcgcgtt gcttcccatt
     1561 ttggaggaag ccattttgtg actgctcatc aaccacttgc gtgttgcttt agtggggttc
     1621 ttgttttgtt tcgttttctt ctattgtgct tcaagaactg atcacgcagg gttctcaccc
     1681 ttagtttcgg ctcttcatcc taaaactatc acagaggaac aaaatgctgt gggtggagct
     1741 cgtgttcatc actagtctca ccggaaacat ctatggtcgg aggccatctt gaagacggaa
     1801 cttggaaatg tcttgctttc cacaggctct gctaagaaga ggagctgtag tttccgagcc
     1861 ttgacggtag catctaccgc tgggatggtc ttgatccact gcactgccac tcgatggggg
     1921 cttcagaggg cctgggagat gggaggaaaa cttggggccc cgctataacc agttagtatt
     1981 tgctgttcct caagagggac ttttcgaggg accaggtggt tccttgacct tcagaactgt
     2041 ggtgtccttg aggtgagaca acacagtctc taaacacaga atcctgcccc cagccgaatt
     2101 gagtgtgaag gtctctggga gtgggactca gtctttggag acgtgggcaa acggtgccca
     2161 ttcacagtgt cggatcgagg agactgtagt agctttgaga aaacctccag tattggtgct
     2221 acagtaagga tttcttttct gggcaatttc ttccttctat gtattatttg ccagtgacca
     2281 ctgagatgtg actggaaatt ttagaacgga ggagagatga acattactta accagatcat
     2341 tgggcacagt gattacttgt gactgggtgg caatgattca gaaccctagt ctgttcttgc
     2401 accccgagct cccccatacc ggataggctc ttgtctgaag taaagtttct agaagaaaga
     2461 tgtaggaagg cctagattct gagaactctg tgtgtcagaa gagaagcctt gagcggcctg
     2521 ggctgtcttt gaaacacagc aacagcatgg aaactgacac atttctggaa aaatcatttg
     2581 cccaaagggc aggtctctgt gagcaggacc cttgcgcatg ctccgcttcc ctggaatcag
     2641 ctccatcgct gtggtctagc agcttgcaac aaaggcctgg gttattttta gtcttcagct
     2701 cctgaagaag cccctggaga cctgggctag ctgggcccct ctgcccagct gcagcatggc
     2761 ctctgccact ccacaggagt cgtcctcccc ctggctaatt gctcttggca tgtggaccag
     2821 ggcagcctgg caaggaacca agcagtgtgt ccctcccccg caacttcttt gcagagtgac
     2881 ctgtggcaag agagtggggg tcactctcct gcaggccctg tggcctcaga gctagttcca
     2941 tgcatacgaa atgatctcat ttaaagggcc cctgtccaga gagcatctct ctcctcctct
     3001 caagctctct tcttcctcct gctggttgct gtgcctgtgt ggattcaaaa gcacccagaa
     3061 tggcttgagg gatggcccat ctcctcagag gggtacttcc ctctccagac tcagctggct
     3121 ctctcttccc acaaaatcta aagcagagtg ttctcaaagg ctaattactt gtttggggga
     3181 atcatattaa attaatttta ggggggttgg ggaggcccaa atgttctgga atgctatact
     3241 ggcttaaagg tggggaaaaa ataaccccac ctttatggct ctgagacttg acagatcctc
     3301 ttctggagtg gacacgagtc tgctctctac agaaatgcag atgttgcatg tccagccaac
     3361 cttgtgcccg cccaaactgt cggggatcat gcttccctag ccaattcaag gcaccagccc
     3421 gagcttgtcc acagtgctgg ggaacagcac tctgtctcat aaggaaggct ccagggggtc
     3481 cttctcttct gtccttctca cttgtcctgg agaatggact ccacctttcc ccttcagagg
     3541 ttttggtttg gtttcccatg tagagagtgg ggagagcagc tcagcatgga gacgttgtat
     3601 tagggtacgg caggccaggt cttcagagtc gtcatcctgc atcggaaaaa gaaggtgtta
     3661 agtcaagtaa aaatgatatc ttctttctca gagccctgga atgagcagta atcacagggt
     3721 cagggttcta gtgtcccttc tacccctgca tagtgtgtga ccttggacaa ttcacttagc
     3781 accctcaact tcaatgtacc catctgtaaa atggaaatga taacacttgc cttttctatc
     3841 ccacagtgac acggggaggg gcccaaagta caatgttaca taaacagtcg actgcagagc
     3901 ctgacttgtc tatggcaact cttgacatgt aagcctccat ctatcaaaag ggatgttcca
     3961 agagggcttc tagctttgga ctagaagcca cagaaaagtg gaagcttaca tgtcaagggc
     4021 catgttgtcc gtggtcaggg ctcctaagcc agggctgtga tcatggagac catgattggg
     4081 cttgggtggt gatgggaggt gcccagggtt tggggacttg aggacaaaga taccataaat
     4141 gcatgtgcat gtggacagat agacacagac agagagacac acaaacacag acagacagac
     4201 acacaaacac acacatacac actatcagca tgatcaacca cttggagtgg gagccaactt
     4261 ctgtagaggg cactgtgcac gtgtctcttt tagctggtta aggtggcttt gcctctctga
     4321 gcctcactgc ccaaaactgt gaggcagaga aatctaggct gtctagacat ctagcaggtc
     4381 tgttagagta atgcttgcta atgagtatca tggtgcaggt cttgctaaaa atggggcttc
     4441 cagtctctag tagccactgt cactgtccag aagtcactaa gaggagatga ttctgttgag
     4501 gacccctcaa gtccccgaca gggttgttct gctccactac agccttacat ccttatgtgg
     4561 tagctaaaga accctggctg gaagataaac tcatttcttt ctagacactc ttgagaccct
     4621 acatttggga cccgtagtaa atccaggata ggcacctgtt gaggaaagag gagtggagct
     4681 ctagataggg acctgacttt cctgtcttct tttccaaccc tttctgacac tgccagaggc
     4741 agaagccagc aagtctgctg tacatggttg aatcagggcc agccaggaag ctgggtctag
     4801 gtggagagag tggctggtgc ccttggctca gcctgagaga gaccctgtga ctaggtgact
     4861 agggggtggt taaatggggg ggaagaaagg gggcagagag ggagacacag agagagagag
     4921 agagagagag agagagagga agaggaagag gaagagaaga ttaagaggaa gaggaagagg
     4981 aagaagagga agagggagag aggagaggag aggagattct gatcagggga gctcagagga
     5041 agttttgctg gggaagaagc tatggtttca ttcctggtgc actttagtct tcaagaacaa
     5101 tccctcccag gcctcacatg taaagttcag gtattttaag ggagaaaacc aacaggacta
     5161 tatttacgtt tcctttgggg gcaagttcag aaaacttata ttttgcagta ggtggaagaa
     5221 aaaccacagg tagcaccagg ctgcatcagg cacagataag ggtctggtgg tttcctcttc
     5281 cagcctacct gttcaaagca gtcttgcttg gctggtgggt ggcccgggca gggccgttag
     5341 aatcccctta cctgccattt ggaaggactg aggtcagagt gtctccctcc tactcaataa
     5401 tgtctattct tagtactcct taggaattcc agagtcatgg tccaagggag aagttggctc
     5461 ccaggccaga gtcatgccta cattgccact gaagatgtgt gtgtgtgttc ccaggcctag
     5521 ctccagaccg gagcagtact ggtgcccctt gtagtagacc agcattcctg agttgggttg
     5581 gggggttggg gaaagggaat cagtgttaac ctaatataga gaagacatgg gaatgaacct
     5641 tgggaaggtg agggtgtacc gatgggggct gttgggagct gtaagcagag gaacggggca
     5701 tgggatatga agagttatta tgacaagctc cccccacccc cacaaattgt ttaaaaaaag
     5761 ataaaagaaa caaaagccaa acgttggcct agcagtagat gctgggccag ctctcctttc
     5821 tgtgggctcc ctggatccat gctggttgag ggggctatca gaggacaagg agggaaggac
     5881 tggtacccct tgcccagtgg aaataggaag gccttccagg ctcctgcctg agtctccgtg
     5941 gatttttcca ctcctacaga tgagtgtcat tggaacattt ggacataagt tgcttagact
     6001 ccactggtct agactggcta gggtcaggag acagacagat ggtagcaggg tgagcttgat
     6061 cctggcctac agccttgggc ctgggagcaa tttcaggctt tgctgcttcg gggcttaggc
     6121 cttaggtcct gactccagca gctggaaagt gcgataggag ggcctggcca gccttttccc
     6181 taccacctgg cagaacagac aaggttccat gtcccccact gtctgctgcc ctttcaggtc
     6241 tttccaagag ctcagcttta tctgtgtccc agctgaggaa aggtgaggac actggtgtgt
     6301 gtttgttttt gcttcaagtc catgtctccc caccgtgatc cctcctgcac aaaatctaat
     6361 ttatcagtag tcagaagggc ccttgaggtc atctgtgagt taggctcttt ggttattaac
     6421 caacattctt aggccttgag gtctttatga tcctcttcca gaagccacag taacctgcct
     6481 ggagggtggg atcagtctgg gaaccatgga ttggtttagg gtctttgaga gctgaaaatg
     6541 tttttccaat gagcctgaag acttgtgggg taggaggact tggaaatttg ctctgaggag
     6601 tagatcaggg ggaagcaaga ggaggatgtg ggatgggccc ttcgagcatc acagtggttg
     6661 cttctggaaa ggcctggctg cagagctatt caaactgggc agtcagagag aggcacaaag
     6721 gaagcaactt caggaagccc tgagatggag aggtgggctc ctgccttgtc atttttgcat
     6781 ttaccctgtc tctcagaagg gacacacaca cacccccatc cccaccccac cccacccatg
     6841 aagaggaaaa
//
