LOCUS       NM_001191818            1240 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus double PHD fingers 3 (Dpf3), transcript variant
            1, mRNA.
ACCESSION   NM_001191818 XM_238462
VERSION     NM_001191818.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Cui,H., Schlesinger,J., Schoenhals,S., Tonjes,M., Dunkel,I.,
            Meierhofer,D., Cano,E., Schulz,K., Berger,M.F., Haack,T.,
            Abdelilah-Seyfried,S., Bulyk,M.L., Sauer,S. and Sperling,S.R.
  TITLE     Phosphorylation of the chromatin remodeling factor DPF3a induces
            cardiac hypertrophy through releasing HEY repressors from DNA
  JOURNAL   Nucleic Acids Res 44 (6), 2538-2553 (2016)
   PUBMED   26582913
  REMARK    GeneRIF: Activation of DPF3a upon hypertrophic stimuli in cardiac
            hypertrophy switches cardiac fetal gene expression from being
            silenced by HEY to being activated by BRG1.
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Staahl,B.T., Tang,J., Wu,W., Sun,A., Gitler,A.D., Yoo,A.S. and
            Crabtree,G.R.
  TITLE     Kinetic analysis of npBAF to nBAF switching reveals exchange of
            SS18 with CREST and integration with neural developmental pathways
  JOURNAL   J Neurosci 33 (25), 10348-10361 (2013)
   PUBMED   23785148
REFERENCE   3  (bases 1 to 1240)
  AUTHORS   Patel,D.J. and Wang,Z.
  TITLE     Readout of epigenetic modifications
  JOURNAL   Annu Rev Biochem 82, 81-118 (2013)
   PUBMED   23642229
  REMARK    Review article
REFERENCE   4  (bases 1 to 1240)
  AUTHORS   Shain,A.H. and Pollack,J.R.
  TITLE     The spectrum of SWI/SNF mutations, ubiquitous in human cancers
  JOURNAL   PLoS One 8 (1), e55119 (2013)
   PUBMED   23355908
REFERENCE   5  (bases 1 to 1240)
  AUTHORS   Hargreaves,D.C. and Crabtree,G.R.
  TITLE     ATP-dependent chromatin remodeling: genetics, genomics and
            mechanisms
  JOURNAL   Cell Res 21 (3), 396-420 (2011)
   PUBMED   21358755
  REMARK    Review article
REFERENCE   6  (bases 1 to 1240)
  AUTHORS   Lessard,J., Wu,J.I., Ranish,J.A., Wan,M., Winslow,M.M.,
            Staahl,B.T., Wu,H., Aebersold,R., Graef,I.A. and Crabtree,G.R.
  TITLE     An essential switch in subunit composition of a chromatin
            remodeling complex during neural development
  JOURNAL   Neuron 55 (2), 201-215 (2007)
   PUBMED   17640523
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jul 17, 2010 this sequence version replaced XM_238462.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.36350.1,
                                           SRR26643288.27414.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                JAXUCZ010000006.1  108856572-108856625 c
            55-215              JAXUCZ010000006.1  108736175-108736335 c
            216-323             JAXUCZ010000006.1  108717806-108717913 c
            324-451             JAXUCZ010000006.1  108699398-108699525 c
            452-547             JAXUCZ010000006.1  108692426-108692521 c
            548-626             JAXUCZ010000006.1  108683347-108683425 c
            627-764             JAXUCZ010000006.1  108662325-108662462 c
            765-893             JAXUCZ010000006.1  108644337-108644465 c
            894-1240            JAXUCZ010000006.1  108641157-108641503 c
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..1240
                     /gene="Dpf3"
                     /note="double PHD fingers 3"
                     /db_xref="GeneID:299186"
                     /db_xref="RGD:1309052"
     exon            1..54
                     /gene="Dpf3"
                     /inference="alignment:Splign:2.1.0"
     CDS             23..1096
                     /gene="Dpf3"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger protein DPF3; D4, zinc and double PHD fingers,
                     family 3; RGD1563913; zinc finger protein DPF3-like"
                     /codon_start=1
                     /product="zinc finger protein DPF3 isoform 1"
                     /protein_id="NP_001178747.1"
                     /db_xref="GeneID:299186"
                     /db_xref="RGD:1309052"
                     /translation="MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDS
                     QTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEV
                     ELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEED
                     LEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYA
                     HTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSG
                     RPEELVSCADCGRSAHLGGEGRKEKEAAAAARTTEDLFGSTSESDTSTFYGFDEDDLE
                     EPRSCRGRRSGRGSPTADKKSSC"
     exon            55..215
                     /gene="Dpf3"
                     /inference="alignment:Splign:2.1.0"
     exon            216..323
                     /gene="Dpf3"
                     /inference="alignment:Splign:2.1.0"
     exon            324..451
                     /gene="Dpf3"
                     /inference="alignment:Splign:2.1.0"
     exon            452..547
                     /gene="Dpf3"
                     /inference="alignment:Splign:2.1.0"
     exon            548..626
                     /gene="Dpf3"
                     /inference="alignment:Splign:2.1.0"
     exon            627..764
                     /gene="Dpf3"
                     /inference="alignment:Splign:2.1.0"
     exon            765..893
                     /gene="Dpf3"
                     /inference="alignment:Splign:2.1.0"
     exon            894..1240
                     /gene="Dpf3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tattctgtta cattgtagca aaatggcgac tgtcattcac aaccccctga aagcgcttgg
       61 ggaccagttc tacaaggaag ccattgagca ctgtcggagc tacaactcga ggctgtgtgc
      121 agagcggagc gtgaggctcc ccttcctgga ctcgcagact ggggtggctc agaacaactg
      181 ctacatctgg atggagaaga ggcaccgagg cccaggcctt gccccgggcc agctgtatac
      241 ttaccccgcc cgctgctggc gtaagaagcg acgattgcac cccccagagg acccaaagct
      301 gcgactcctg gagataaaac cggaagtaga actgcccctg aagaaagatg gatttacctc
      361 tgagagcacc acactggaag ccttgcttcg tggtgaggga gtggagaaga aggtggatgc
      421 cagagaagag gagagcatcc aggagataca gagggttttg gaaaatgatg aaaatgtaga
      481 agaagggaat gaagaggaag atttggaaga agatattccc aagcgcaaga acaggaccag
      541 aggacgggct cgtggctctg caggcggcag gaggaggcat gatgcggcct ctcaggaaga
      601 ccatgacaaa ccctacgtct gtgacatctg tggcaagcgc tacaagaacc ggccgggact
      661 cagctaccac tatgctcaca ctcacctggc cagcgaggag ggagatgaag cccaagacca
      721 ggagacccga tccccaccca accacagaaa cgagaaccat agaccccaga aaggaccaga
      781 cgggacagtc attcctaata actactgtga cttctgcttg gggggctcca acatgaacaa
      841 gaagagtgga aggcccgaag aacttgtgtc ctgtgcagac tgtggacgct ctgctcattt
      901 gggaggagaa ggcaggaagg agaaggaggc agcggccgca gcacggacca cggaggactt
      961 attcggttcc acgtcagaaa gtgacacctc aactttctac ggctttgatg aggacgattt
     1021 ggaagagcct cgctcctgtc gaggacgccg cagtggccgg ggttcaccca cagcagataa
     1081 aaagagcagc tgctgagcgc atgggacaga ctgtctggcc aattagcctc cccgcccctg
     1141 actcttgtca ttgtctagtt ctgatatata tttttaaatg aaagacgact tgggcatttc
     1201 cctttatcct tgcttttatc ttctgccttc catgtgtccc
//
