LOCUS       XM_039083942            2502 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus double PHD fingers 2 (Dpf2),
            transcript variant X2, mRNA.
ACCESSION   XM_039083942
VERSION     XM_039083942.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083942.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2502
                     /gene="Dpf2"
                     /note="double PHD fingers 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 31 ESTs, 5 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361711"
                     /db_xref="RGD:1311699"
     CDS             181..1338
                     /gene="Dpf2"
                     /codon_start=1
                     /product="zinc finger protein ubi-d4 isoform X2"
                     /protein_id="XP_038939870.1"
                     /db_xref="GeneID:361711"
                     /db_xref="RGD:1311699"
                     /translation="MEQCHNYNARLCAERSVRLPFLDSQTGVAQSNCYIWMEKRHRGP
                     GLASGQLYSYPARRWRKKRRAHPPEDPRLSFPSIKPDTDQTLKKEGLISQDGSSLEAL
                     LRTDPLEKRGAPDPRVDDDSLGEFPVTNSRARKRILEPDDFLDDLDDEDYEEDTPKRR
                     GKGKSKSKGVSSARKKLDASILEDRDKPYACDNSFKQKHTSKAPQRVCGKRYKNRPGL
                     SYHYAHSHLAEEEGEDKEDSQPPTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKI
                     NKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNLCGTSENDD
                     QLLFCDDCDRGYHMYCLTPSMSEPPEGSWSCHLCLDLLKEKASIYQNQNSS"
ORIGIN      
        1 tggcccctca gtcccgtcgc gctgaggccg gcggccctgg gagatcgggg tcccctctcc
       61 gcccaccgcc ctccctggga ctacaggctc cgccgtacct gctgggatcc taagatttaa
      121 gcagcccggt gacattaacc gggaaatccg ggccttgggg agcagtacta caaagatgcc
      181 atggaacagt gccacaatta taatgcccgc ctgtgtgccg agcgtagcgt gcgtctgcct
      241 ttcttggact ctcagactgg agtagcccag agcaattgtt acatctggat ggaaaagcgg
      301 caccggggcc caggattggc ctctggacag ttgtactcct accctgcccg acgctggcga
      361 aaaaagcgtc gagcccaccc acctgaggat cccaggcttt ctttcccgtc tattaagcca
      421 gacacggacc agactctgaa gaaagagggc cttatctccc aggatggcag cagtttagag
      481 gctctgctgc gtactgatcc cctggagaaa cggggtgccc cagatccccg agttgatgat
      541 gacagcctgg gcgagtttcc tgttaccaac agtcgagcac ggaagcggat ccttgaaccc
      601 gatgacttcc tagacgacct tgatgacgag gactatgaag aagatactcc aaagcgtcgg
      661 ggaaagggga aatccaagag taagggtgtg agcagtgccc ggaagaagct ggacgcttcc
      721 atcctggagg accgggataa gccctatgcc tgtgacaata gtttcaaaca aaagcatacc
      781 tcgaaagcgc cccagagagt ttgtggaaaa cgttacaaga accgacctgg cctcagttac
      841 cactatgccc attcccacct ggctgaagag gaaggagagg acaaagaaga ctcccaacca
      901 cccactcctg tgtcccagag gtctgaggag cagaaatcca agaaaggacc tgatgggttg
      961 gccctgccta acaactactg tgacttctgc ctgggagact caaaaatcaa caagaagaca
     1021 gggcagcctg aggagctggt gtcctgttct gactgtggcc gctcagggca tccgtcctgc
     1081 ctgcagttca cccctgtgat gatggcagcc gtgaagacct accgctggca gtgcatcgag
     1141 tgcaagtgct gcaacctctg cggcacttca gagaacgacg accagctgct tttctgtgat
     1201 gactgtgacc gtggctacca catgtactgt ctcacccctt ccatgtctga gcctcctgaa
     1261 ggaagttgga gttgccacct gtgtttggat ctgctgaagg agaaagcgtc catctaccag
     1321 aaccagaact cctcctgatg tgccacccag ctcccctgca tcgaaggccg ttgctctctc
     1381 tttaccttgg ttttcattcc ccctctctcc tctttcaccc tgtagtccta ccaacctgcc
     1441 tttggcaaca gcacagggag gtggcagctt tgactgcctc tggccccaag ccctcaggga
     1501 gtaaggagca gcatgctgcc ccaggactga cctgtgggcc caacttctct ctgttctcca
     1561 agaagtgcat tcactctgct tgccttgggc ccaagaccct ggtgattaca gggctcaaat
     1621 agggtcctct gagaaggaat atgagagcag ctcactgtct caagccttgc ctagcctcac
     1681 ccccaacccc ctttggtttc ctgggttttg tcccagagat gagccaggct gggccttttc
     1741 tgaagcagct ggagtgagct ggctgaagtg gcacttgcca ggaccttttc atatcctagt
     1801 ctgcttccct ttgcctcctg ccaaagcagt cccctgtcct ctgccatgct acatgaggct
     1861 ctgtgcttga gctagagtgc tctcaacacc tcctggctct ccctgtccca caaagggaca
     1921 agcagcttaa acctgtcctt cctgtgcttg gctggcttgc tcacaggtgc tctctggcta
     1981 cccaaacatt tcccatcctc agaacctact gtcttctgcc tccttccttg ttccctttgg
     2041 ttttgtaggg agagggatag tgtcaagggc tgtgccagca gcttggggcc gcagggagag
     2101 gttggataat gtgcctgttt tttaactcga taaaaaagcc tacctccaaa atcccctttt
     2161 cgttcttcct ggacctgggc attcagcctc ctgcccttaa ctgaatcagg agcctctgcc
     2221 tcctgcctgt gcatcctggc tcccaggtca caggttggtc ccctttcctt gcacgctagc
     2281 tagtagctgg taaggtcttc acaccctgat ttttctgttt cctgcttagt ggcactgaca
     2341 ttaagtagga ggggacagtc catgccaaga tactctggag tgggcttccc ccttggctgt
     2401 gggcaggcag gccctaactg ttgttttctg caaagttgag gccccctctt cacatattta
     2461 gttcctgtat tcaaaacatt agtaaaaata aacattttta ca
//
