LOCUS       NM_001105729            2349 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus double PHD fingers 1 (Dpf1), mRNA.
ACCESSION   NM_001105729 XM_001075457 XM_341822
VERSION     NM_001105729.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Staahl,B.T., Tang,J., Wu,W., Sun,A., Gitler,A.D., Yoo,A.S. and
            Crabtree,G.R.
  TITLE     Kinetic analysis of npBAF to nBAF switching reveals exchange of
            SS18 with CREST and integration with neural developmental pathways
  JOURNAL   J Neurosci 33 (25), 10348-10361 (2013)
   PUBMED   23785148
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Shain,A.H. and Pollack,J.R.
  TITLE     The spectrum of SWI/SNF mutations, ubiquitous in human cancers
  JOURNAL   PLoS One 8 (1), e55119 (2013)
   PUBMED   23355908
REFERENCE   3  (bases 1 to 2349)
  AUTHORS   Hargreaves,D.C. and Crabtree,G.R.
  TITLE     ATP-dependent chromatin remodeling: genetics, genomics and
            mechanisms
  JOURNAL   Cell Res 21 (3), 396-420 (2011)
   PUBMED   21358755
  REMARK    Review article
REFERENCE   4  (bases 1 to 2349)
  AUTHORS   Lessard,J., Wu,J.I., Ranish,J.A., Wan,M., Winslow,M.M.,
            Staahl,B.T., Wu,H., Aebersold,R., Graef,I.A. and Crabtree,G.R.
  TITLE     An essential switch in subunit composition of a chromatin
            remodeling complex during neural development
  JOURNAL   Neuron 55 (2), 201-215 (2007)
   PUBMED   17640523
REFERENCE   5  (bases 1 to 2349)
  AUTHORS   Buchman,V.L., Ninkina,N.N., Bogdanov,Y.D., Bortvin,A.L.,
            Akopian,H.N., Kiselev,S.L., Krylova,O.Yu., Anokhin,K.V. and
            Georgiev,G.P.
  TITLE     Differential splicing creates a diversity of transcripts from a
            neurospecific developmentally regulated gene encoding a protein
            with new zinc-finger motifs
  JOURNAL   Nucleic Acids Res 20 (21), 5579-5585 (1992)
   PUBMED   1454523
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CO396551.1, BC159415.1 and JAXUCZ010000001.1.
            
            On Sep 27, 2011 this sequence version replaced NM_001105729.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC159415.1, SRR26643298.2217.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                CO396551.1         1-72
            73-1582             BC159415.1         1-1510
            1583-2349           JAXUCZ010000001.1  93742659-93743425
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2349
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /note="double PHD fingers 1"
                     /db_xref="GeneID:50545"
                     /db_xref="RGD:61868"
     exon            1..104
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..1239
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /note="neuro-d4; neuronal d4 domain family member; BAF45B;
                     BRG1-associated factor 45B; D4, zinc and double PHD
                     fingers family 1"
                     /codon_start=1
                     /product="zinc finger protein neuro-d4"
                     /protein_id="NP_001099199.2"
                     /db_xref="GeneID:50545"
                     /db_xref="RGD:61868"
                     /translation="MATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQ
                     TGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCE
                     APLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEE
                     DIPRRKNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTH
                     LAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDF
                     CLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTS
                     ENDDQLLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT"
     exon            105..265
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            266..373
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            374..501
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            502..591
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            592..670
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            671..802
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            803..853
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            854..973
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1086
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1168
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            1169..2349
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcctcagcg cccgcccgac cgctgggagg accgacccgg cagggacctg ctgggggcag
       61 gacccgggga gcaagatggc cacggtcatc cccagccccc tgagccttgg cgaggacttc
      121 taccgggagg ccatcgagca ctgccgcagc tacaacgcgc gcctgtgtgc cgagcgcagc
      181 ctgcgcctgc ccttcctcga ctctcagacc ggcgtggctc agaacaactg ctacatctgg
      241 atggagaaga cccaccgcgg gcctggtttg gccccaggac agatctacac ttaccccgcc
      301 cgctgttgga ggaagaaacg gagactcaac atcctggagg accccaggct ccggccctgc
      361 gagtacaaga tcgattgtga ggcacctctg aagaaggagg gtggcctccc ggaagggcca
      421 gtccttgagg ctctgctgtg cgctgagact ggagagaaga aagtggagtt gaaggaggag
      481 gagaccatta tggactgtca gaaacagcag ttgctggagt ttccgcatga tctcgaggta
      541 gaagacttgg aggaagacat tcccaggagg aagaacaggg ccaaaggaaa ggcgtatggc
      601 attggaggtc tccggaaacg ccaggacaac gcatccttgg aggaccgaga caagccgtac
      661 gtctgtgata tctgtgggaa gaggtataag aaccggccag ggcttagcta ccactacacc
      721 cacacccacc tggctgagga ggagggggag gagcacactg agcgccacgc cctgcctttc
      781 caccggaaaa acaaccataa acagttttac aaagaattgg cctgggtccc cgaggcacag
      841 aggaaacaca cagccaagaa agcaccagat ggcactgtca tccccaatgg ctactgtgac
      901 ttttgcctgg ggggctccaa gaagactgga tgtcctgagg acctcatctc ctgtgcggac
      961 tgcgggcgat caggacatcc ctcgtgttta cagttcacgg tgaacatgac cgcagccgtg
     1021 cggacctacc gctggcagtg tatcgaatgc aagtcctgca gcctgtgtgg cacctcggag
     1081 aatgacgacc agctgctgtt ctgtgacgac tgcgatcggg gttaccacat gtactgcctg
     1141 agccctccca tggcggagcc cccggaaggg agctggagtt gccacctctg tctccggcac
     1201 ttgaaagaaa aggcctccgc ttacatcacc ctgacttaga cctggctctg cttctccagg
     1261 acctttgggt ggtgctatcc tcggcctctt ggagctcctg acttttcccg cctggtgtcc
     1321 ccagtggaag ggatagggtg aagcccagag aggggccaag gcggtctccc tctgcaagtg
     1381 gaatgttacc ctgagggagg gtgggtccag cagggtccct cctgtccccc atcttcattc
     1441 cttgacaagt gggcaccagg cttctgctcc cctcaaagcc ataccccgcc tctgggcggg
     1501 catagagggg tagtggatgc cagccagtgg cacggaaaaa gcctttttct aaagaaaaag
     1561 acaaaacgtg aaaaaaaaaa aaggaaaaaa aaaaagaaat taatatatac aaagattcct
     1621 ctaagcctgg ctgggtgggg ggccactgag tgtctgctgg gacctgactt taccagtttc
     1681 ctgaatggcc cctccccacc ccatttctgg agttgcaatt gtctcaactc ccatctgagg
     1741 tgggtaccac accttcctca cagccaggcc aggtgggcat ggtgcccaca cactgccccc
     1801 tcccggtacc caccgtggat actgcatgat gtgaaccatg gttttgaact cttcctgccc
     1861 ctcctttgag agccccgccc tgcgcccacc cggtgcctgc cagacctggg gcttgcagct
     1921 gggggaggcc ggtggggtga ggcaggcagg caggcagcca gcccgctgca atgagaagaa
     1981 gcacagattg caatggactc agttgttttt tgttttttgt ttttgttttt gttttttttt
     2041 ctttctttct cccttctcaa ccctttcctt ccctacccag ccaggctggg ctgcctcctt
     2101 ccccccatcg ctagccattt tgggggtggc aaggaggtgt ggtcgtttct cgtggttgtg
     2161 tgtgtttgtt gttcgggttt taaaaaaggg aaattgagac tgcaagtggg gggaggtgga
     2221 gggtctgggg gagtctgccc cccaacccag gagtaccccc cttgccacca agtctccttt
     2281 attgcctgcc tctgctgtga attaacttgt tctgtgtatt aaactgggcc ggacccctct
     2341 gcccacaac
//
