LOCUS       NM_001398788            1508 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus deleted in primary ciliary dyskinesia (Dpcd),
            transcript variant 1, mRNA.
ACCESSION   NM_001398788 XM_006231450
VERSION     NM_001398788.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Vogel,P., Read,R.W., Hansen,G.M., Payne,B.J., Small,D., Sands,A.T.
            and Zambrowicz,B.P.
  TITLE     Congenital hydrocephalus in genetically engineered mice
  JOURNAL   Vet Pathol 49 (1), 166-181 (2012)
   PUBMED   21746835
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   3  (bases 1 to 1508)
  AUTHORS   Vogel,P., Read,R., Hansen,G.M., Freay,L.C., Zambrowicz,B.P. and
            Sands,A.T.
  TITLE     Situs inversus in Dpcd/Poll-/-, Nme7-/-, and Pkd1l1-/- mice
  JOURNAL   Vet Pathol 47 (1), 120-131 (2010)
   PUBMED   20080492
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 23, 2021 this sequence version replaced XM_006231450.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.943240.1,
                                           SRR26360194.1179627.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               JAXUCZ010000001.1  254357793-254357893
            102-182             JAXUCZ010000001.1  254362254-254362334
            183-307             JAXUCZ010000001.1  254369271-254369395
            308-441             JAXUCZ010000001.1  254369778-254369911
            442-544             JAXUCZ010000001.1  254374462-254374564
            545-1508            JAXUCZ010000001.1  254374955-254375918
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..1508
                     /gene="Dpcd"
                     /gene_synonym="RGD1307648"
                     /note="deleted in primary ciliary dyskinesia"
                     /db_xref="GeneID:294004"
                     /db_xref="RGD:1307648"
     exon            1..101
                     /gene="Dpcd"
                     /gene_synonym="RGD1307648"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..649
                     /gene="Dpcd"
                     /gene_synonym="RGD1307648"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein DPCD"
                     /codon_start=1
                     /product="protein DPCD isoform 1"
                     /protein_id="NP_001385717.1"
                     /db_xref="GeneID:294004"
                     /db_xref="RGD:1307648"
                     /translation="MAVTSWLEILRSAEKTALLQDGKRMVHYLFPDGKEMAEEYDEKT
                     SELLVRKWRVKNALGALGQWQLEVGEPMPSGAGSLGSELIKESNANPIFMRKDTKTSF
                     QWRIRNLPYPKDVYSVSVAQKERCVIVRTTNKKYYKKFSIPDLDRHQLPLEDSALSFA
                     HANCTLIISYQKPKEVMAAESELQKELKKVKTAHSSDGDCKTQ"
     exon            102..182
                     /gene="Dpcd"
                     /gene_synonym="RGD1307648"
                     /inference="alignment:Splign:2.1.0"
     exon            183..307
                     /gene="Dpcd"
                     /gene_synonym="RGD1307648"
                     /inference="alignment:Splign:2.1.0"
     exon            308..441
                     /gene="Dpcd"
                     /gene_synonym="RGD1307648"
                     /inference="alignment:Splign:2.1.0"
     exon            442..544
                     /gene="Dpcd"
                     /gene_synonym="RGD1307648"
                     /inference="alignment:Splign:2.1.0"
     exon            545..1508
                     /gene="Dpcd"
                     /gene_synonym="RGD1307648"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcagtgg ccaggcgcgt tgctgggcgg agggaagatg gcggtgacta gctggctgga
       61 gattttgcgg tcggccgaga agacggcact gctgcaggat gggaagagga tggtgcacta
      121 tttgttccca gacgggaagg aaatggcgga agaatatgat gagaagacca gtgaactcct
      181 tgtgagaaag tggcgtgtga aaaatgccct gggagccttg ggccagtggc agctcgaagt
      241 gggagaacca atgccctcag gagctgggag cctgggatcc gagctcatca aggaaagtaa
      301 tgccaatccc atcttcatgc gcaaggacac caaaacaagt ttccagtggc ggattcgaaa
      361 tctcccctac ccaaaggatg tctacagtgt gtcagtggcc cagaaggagc gctgtgtcat
      421 tgttagaacg acaaacaaaa agtactacaa gaagttctcc attcctgact tagacagaca
      481 ccagcttcct ctggaagatt ctgcactgag ctttgctcac gccaactgca ccctgataat
      541 ctcctatcag aagccaaagg aggtcatggc agctgaatca gagctacaga aggagttaaa
      601 gaaggtaaag acagcgcaca gcagtgatgg ggactgcaag acgcagtagc tactgagcct
      661 cgcacctcca gtgtggagga aactgagaga cgtccagact tgggttttat gcacaggcag
      721 cctcttctct tctaagaact acagagtccc cagaactggc ccttggggca cagcttgctc
      781 ccacctgtgg ttttatcctg agtaaagtca tttgcagttg ttctggaagg actgactgcc
      841 tttttctctg atggcccgtc cctggatgcc ttggccttcc tcaccccacc ttcccatcct
      901 gaggaccttc cacacaggcc ttccagctaa agggggagaa aagtgggaac agggctgggt
      961 gtcttgtaaa ctcctgtgtg ctggcttgcc ttatatgagt agctcaggga aaactcctct
     1021 gaggcaggta tgggcaaagg agaagtttaa aaatttagct gtcttggaaa cagcacagaa
     1081 tgttaggaca ctggttaaaa gagcatggct acagtattgt caaaggtgtg tgtatggtgg
     1141 gacagagcga aaggtcaccc agctcagcac ctagagccct ctgaccgtta gttccttatc
     1201 tgcgccccaa agaggtagaa gaaacctttt tgttctcggg ggcacagcca tgggtttgtc
     1261 cttcccctgt acacattcct gagtttaaat gtgatactct gccttcctgg agcctcttag
     1321 aatacctaac cagggctgga gagatagctc agagtaccaa ctgctctccc agaggtcccg
     1381 agttcaattc ctaataacta catgtggctc acagccatct gtaatgggat ctggtgtgtc
     1441 tgaagacagc tgcagtgtac gcatatacat taaataaatc ttaaaaaaaa aatgacctaa
     1501 ccatcaaa
//
