LOCUS       XM_039081054            2028 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dolichyl-phosphate
            N-acetylglucosaminephosphotransferase 1 (Dpagt1), transcript
            variant X4, mRNA.
ACCESSION   XM_039081054
VERSION     XM_039081054.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081054.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2028
                     /gene="Dpagt1"
                     /gene_synonym="H2afx"
                     /note="dolichyl-phosphate
                     N-acetylglucosaminephosphotransferase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 23 ESTs, 3 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 204 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:300668"
                     /db_xref="RGD:735124"
     CDS             670..1575
                     /gene="Dpagt1"
                     /gene_synonym="H2afx"
                     /codon_start=1
                     /product="UDP-N-acetylglucosamine--dolichyl-phosphate
                     N-acetylglucosaminephosphotransferase isoform X4"
                     /protein_id="XP_038936982.1"
                     /db_xref="GeneID:300668"
                     /db_xref="RGD:735124"
                     /translation="MIFLGFADDVLNLRWRHKLLLPTAASLPLLMVYFTNFGNTTIVV
                     PKPFRWILGLHLDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQSLVISASIIVFN
                     LVELEGDYRDDHVFSLYFMMPFFFTTLGLLYHNWYPSQVFVGDTFCYFAGMTFAVVGI
                     LGHFSKTMLLFFMPQVFNFLYSLPQLFQIIPCPRHRMPRLNTKTGKLEMSYSKFKTKS
                     LSFLGTFILKVAESLRLVTVHRGESEDGAFTECNNMTLINLLLKVFGPTHERNLTLFL
                     LLLQVLSSAVTFSIRYQLVRLFYDV"
ORIGIN      
        1 aggaagcggt catgttggaa ctgggcaaag cgtctttcca ctctgagctg tacaatatga
       61 ttgtttctag agtatccact ttatctgttc ttcagttgag tttccaaaac tctaatggtg
      121 cctctcctct agagctaaag tctagtttga aataatacca cctgtccggc tctggtgccc
      181 attttaaaaa tggtgcttcg gtcttcaaca gcgatagttc tttcgtaatt aagatccggg
      241 tggaaacaat gggtaggtgc agcggggcag agccgaggtt gcttcaaaga gcttcttgca
      301 ggtcaggagg gagggtcagg tcctagccgg gttttgttcc tgctggcgcc ggaatcctct
      361 gagtgtaggg agctgcactg ctggctgccg aggcctctgg tttgttcctg gcttaccaag
      421 ttagctgagt aggcggcgga gcggcggccc ccggagggtc actatgtggg ccttcccgga
      481 gttacctctg ccgctgccgc tgttggtgaa tttgatcgga tcgctgttgg gatttgtggc
      541 taccgtcacc ctcatccctg ccttccgtag ccactttatc gccgcgcgtc tctgtggcca
      601 ggacctcaac aagctcagcc ggcagcagat tttgtggccc tgataggtgc cctccttgct
      661 atctgctgca tgatcttcct gggttttgct gatgacgtac tcaatctgcg atggcgtcat
      721 aagctgctgc tccccacagc tgcctcacta cctctcctca tggtctactt cactaacttt
      781 ggcaatacaa ccattgtggt gccgaagccc ttccgctgga ttcttggcct gcatttggat
      841 ttgggcatcc tgtactatgt ctacatggga ctgcttgcag tgttctgtac caatgccatc
      901 aacatcctag cgggaattaa tggcctagag gctggtcaat cactagtcat ctctgcttct
      961 attattgtct tcaacctggt ggagctggaa ggtgattatc gggacgatca tgtcttttcc
     1021 ctctacttca tgatgccatt tttttttacc accttgggat tgctgtacca taactggtac
     1081 ccgtctcagg tgtttgtggg agacaccttc tgttattttg ctggcatgac ctttgccgtg
     1141 gtgggaatct tgggacactt cagcaagacc atgctgctct tctttatgcc acaagtattc
     1201 aatttcctct actcactgcc tcagctcttt cagatcatcc cctgccctcg acaccgtatg
     1261 cccagactca atacgaagac aggcaaactg gagatgagct attccaagtt caagaccaag
     1321 agcctctctt tcttgggcac gtttatttta aaggtagcag agagcctccg gctggtgaca
     1381 gttcaccgag gggagagtga ggatggtgcc ttcactgagt gtaacaacat gaccctcatc
     1441 aacttgctac ttaaagtctt tgggcctaca catgagagaa acctcacact gttcctgctg
     1501 ctcctgcagg ttctgagcag cgctgtcacc ttctccattc gttaccagct cgtccgactc
     1561 ttctatgatg tctgagctcc ctgacgactg ccctttacca cacagtctcc attggacctc
     1621 agccaggacc cacctctgtc cgctccgacc gccttctggt ccaggctcag cttctgccgt
     1681 catctgtgac tactgacatc ctggatggac tccttagtgg acttgacgtc cactagttgg
     1741 actttgccta tgctttcttg agtttgctac tccctccctt tctgcagcct caccaggtgg
     1801 gcctgtagca tcttttatgc aaatattcat ggctcaactt tcagaaccct aactctaaag
     1861 gaatcccctg ggccttgaga gagaacctgg gctagggcta gagttagggc aacatactcc
     1921 aaggtaacct cacatctgac tatcaaatta agtgttctga ttaggaagag cagaggcagg
     1981 gccatgtgct cagaatggtg acaataaagg attgcctttt acttgttc
//
