LOCUS       XM_017596105            7994 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DOP1 leucine zipper like protein A
            (Dop1a), transcript variant X1, mRNA.
ACCESSION   XM_017596105
VERSION     XM_017596105.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017596105.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017596105.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7994
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7994
                     /gene="Dop1a"
                     /note="DOP1 leucine zipper like protein A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 20 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     25 samples with support for all annotated introns"
                     /db_xref="GeneID:315864"
                     /db_xref="RGD:1305534"
     CDS             257..7696
                     /gene="Dop1a"
                     /codon_start=1
                     /product="protein dopey-1 isoform X1"
                     /protein_id="XP_017451594.1"
                     /db_xref="GeneID:315864"
                     /db_xref="RGD:1305534"
                     /translation="MNTEELELLSDSKYRNYVAAIDKALKNFEYSSEWADLISALGKL
                     NKVLQNNAKYQVVPKKLTIGKRLAQCLHPALPGGVHRKALETYEIIFKIIGPKRLAKD
                     LFLYSSGLFPLLANAAMSVKPTLLSLYEIYYLPLGKTLKPGLQGLLTGILPGLEEGSE
                     YYERTNTLLEKVAAAVEQSAFYSALWGSLLTSPAVRLPGITYVLAHLNRKLSMEDQLY
                     IIGSDIELMVEAVSTSVQDSSVLVQRSTLDLILFCFPFHMSQATRPDMIRILSAALHV
                     VLRRDMSLNRRLYAWLLGFDNNGAIIGPRSTRHSNPEEHATYYFTTFSKELLVQAMVG
                     ILQVNGFGEESTLMQDLKPFRILISLLDKPELGPVILEDVLIEVFRTLYSQCKAELDL
                     QMEPPFSKDRAQLSSKLRENKKTAELIKTANLLFNSFEPYYMWDYIARWFEECCRRTL
                     HARLEVGPGDSSDASEFQLTTFCSLVDFLLDIVSLPTRSMRVLCQETYIEIQTEHLPQ
                     LLLRMISALTSHLQTLRLSELTDSLRLCSKILSKVQPPLLSAGTGGVVQFPSGQNSAV
                     KEWEDKKVSSVSMENPTEVFEDGENPPSSRSSESGFTEFIQYQAERTDDLDRELNGQG
                     TATIPIGSTSSETETASTVGSEETVIQPPSTLTQGAAGRTGKAVQKTAMQCCLEYVQQ
                     FLSRLIHLYILHSDSFPQASAADHQSDLSRIQRDTSKWDRDSQGDAKERNIHTPKTSK
                     EYLSAFLAACQLFLECSSFPVYIAEGNHTSESHSEKPDTDCEHAHPPQWLQTLMSACS
                     QASDFSVQSVAVSLVMDLVGLTQSVAMVTGENINSMEPAQPLSPNQGRVAVVIRPPLT
                     QGNLRYIAEKTEFFKHVALTLWDQLGDGTPQHHQKSVELFYQLHNLVPSSSICEDVVS
                     QQLTHKDKKVRMEAHARFAVLWHLTRDLHVNKSSFARSFDRSLFIMLDSLTSLDGSTS
                     SVGQAWLNQVLQRHDIARVLEPLLLLLLHPKTQRVSVQRVQAERYWSKTSCYPGEEND
                     KHFMQNFTCNNVSQVHLIASKGSREKPLTMDEIENFSLTVNPLSDRLSLLSTSSETIP
                     MVVSDFDLPDQQMEILQSSDSGCSQSSAGDNFSYEVDPENVSAHEDSHLAKASSPDDD
                     VQQVVFDLICKVVSGLEAESASVTSELEIESLPPKSSDFDLGKEATKTEDQAPQHSQH
                     VLLSDDSPRFLSVSTEEGCECLANGISRNSSSPCISGTAQTLTDSSVSSETKSRQRSH
                     SSIQFSFKEKLSEKISEKETIVKESGKQPGAKPKVKLARKKDEDKKKAASEKLKQTNV
                     FFSDGLDLENWYSCGEGEISEIESDMGSPGSRKSPNFNIHPLYQHVLLYLQLYDSSRT
                     LYAFSAIKSILKSNPVAFVNAISTTSVNNAYTPQLSLLQNLLARHRISVMGKDFYSHI
                     PVDSNHNFRSSMYIEILISLCLYYMRSHYPTHVKVTTQDLIGNRNMQMMSIEILTLLF
                     TELAKVIESSAKGFPSFISDMLSKCKVQKVILHCLLSSIFSVQKWHSEKTAGKNMVAV
                     EEGFSEDSLINFSEDEFDNGSTLQSQLLRVLQRLIVLEHRVMTIPEESEAGFDFVVSD
                     LEHVSPHQPMTSLQYLHAQPITCQGMFLCAVIRALHQHCACKMHPQWIGLITSTLPYM
                     GKVLQRVVVSVTLQLCRNLDNLIQQYKYETGLSDSRPLWVASIIPPDMILTLLEGITA
                     IIHYCLLDPTTQYHQLLVNVDQKHLVEARSGILSILHMIMSSVTLLWSILHQADASEK
                     MGLAASASVTTINLGATKNLRQQILELLGPISMNHGVHFMAAIAFVWNGRRQNKTPSR
                     TKVIPAASEEQLLLVELVRSISVMRAETVIQTVKEVLKQPPAIAKDKKHLSLEVCMLQ
                     FFYAYIQRIPVPNLVDSWASLLVLLKDSIQLSLPAPGQFLILGVLNEFIMKNPSLENK
                     KDQRDLQDVTHKIVDAIGAIAGSSLEQTTWLRRNLEVKPSPKIMVDGTNLESDVEDML
                     SPAMETSNITPSVYSVHALTLLSEVLAHLLDMVFYSDEKERVIPLLVNIMHYVVPYLR
                     NHSAHNAPSYRACVQLLSSLSGYQYTRRAWKKEAFDLFMDPSFFQMDASCVSHWRAIM
                     DNLMTHDKTTFRDLMTRVAVAQSSSLNLFANRDVELEQRAMLLKRLAFAIFSSEIDQY
                     QKYLPDIQERLVESLRLPQVPTLHSQVFLFFRVLLLRMSPQHLTSLWPTMITELVQVF
                     LLMEQELTADEDISRTSGPSAAGLETTYTGGNGFSTSYNSQRWLNLYLSACKFLDLAL
                     ALPSENLPQFQMYRWAFIPEASDDSGLEVRRQGIHQREFKPYVVRLAKLLRKRAKDEE
                     DFKILEGLEMAKHQKNPEEDGSARTLGWEPGHLLLTLCTMRNMEQLLPFFNVLSQVFN
                     SKVTSRCGGHSGSPILYSNSFPSKDMKLENHKAFSSKARQKIEEMIEKDFLEGVIKT"
ORIGIN      
        1 ggggaccgag gccgccgacg tcgacgccgg cgtgggcgcg cgcggtgcac gctggtagct
       61 gtcactaggc cctcggctgg cggcctgcga gcggctgccg cggttgccaa gagagcggtg
      121 ccagcgggga gcggcagagc ccgtggcaga tgaggaaatc cagacttgag aaaactaagt
      181 acttggttca agtcattcat ctgggaagga ctttgcatga ctttggaact ggtctctagt
      241 agaacagggt gggagaatga acacagaaga gctagagtta ctgagtgact ccaaatacag
      301 aaactatgta gctgcaattg acaaagcact aaagaatttt gaatactcca gtgaatgggc
      361 agatttgata tcagcacttg gaaaactcaa caaggtttta caaaataatg ccaagtacca
      421 ggtagtaccc aagaaactga ccataggcaa gcgcctagct caatgtctgc acccagcact
      481 accaggcgga gttcatcgga aagcacttga aacatatgaa atcatcttca aaatcattgg
      541 ccctaagcgc cttgccaaag atcttttctt atatagttct gggctgtttc ctcttcttgc
      601 caatgctgct atgtctgtaa aaccaacact gctcagtttg tatgagatat attatctgcc
      661 tttggggaaa actctgaaac ctggtctcca gggattgctg actggtattc ttcctggctt
      721 agaagaagga tcagagtatt atgagagaac aaacacactg ctggaaaaag ttgctgccgc
      781 cgtagagcag tcagcgttct acagtgccct gtggggcagt ctgctcacca gtcccgctgt
      841 gcgcttacct ggaatcacat atgttctggc ccatctgaac aggaagcttt ccatggaaga
      901 tcagctctat ataattggca gtgacattga gctcatggtg gaagcagtaa gtacttcagt
      961 gcaggactca agtgtacttg tacagagaag caccctggac ctcatcctct tctgttttcc
     1021 tttccatatg agtcaggcca ctcggccaga catgatcagg atcttgtcag cagcccttca
     1081 tgtagtacta aggagggata tgtccttgaa ccgaagactt tatgcatggc ttcttggttt
     1141 tgataacaac ggtgctatca taggacccag gagcacacgg cacagtaatc cggaagaaca
     1201 tgccacttac tattttacaa ccttttcaaa agaactgtta gtccaggcca tggtgggaat
     1261 cttacaagtg aatggatttg gagaagaaag cactctcatg caggatctaa aaccttttcg
     1321 tattttaatc agtttattgg acaaacctga actaggacct gtaattctag aagatgttct
     1381 gattgaggtg tttagaactc tgtattctca gtgcaaagca gaactggatc ttcagatgga
     1441 gccacccttc agcaaggacc gtgctcagct aagcagtaaa ttaagggaaa acaagaaaac
     1501 agctgagctg attaaaactg cgaatcttct ttttaattcc tttgaacctt attatatgtg
     1561 ggattacatt gcacgctggt tcgaagaatg ctgtcggagg acactgcacg ccagacttga
     1621 ggttggacct ggagacagta gtgatgcatc tgagttccaa ctgactactt tctgctcact
     1681 ggtggacttt ttgttggata tagtctcctt gcctactaga agtatgaggg tgctgtgtca
     1741 ggagacttat attgaaatcc agacagaaca cttgccccag ttactactca ggatgatttc
     1801 tgccttgaca agccatctcc agacattgcg cttgtctgag ctcacagatt ctctgaggct
     1861 ctgctcaaag atccttagca aggttcagcc cccactgtta tctgctggca ctggaggtgt
     1921 ggtacagttt ccaagtgggc agaacagtgc agtcaaggag tgggaagaca aaaaggtatc
     1981 atcagtttct atggaaaatc ctactgaagt atttgaagat ggggaaaatc caccaagtag
     2041 tcgatcatca gaaagtggtt tcactgagtt tatacagtat caagcagaac ggactgatga
     2101 ccttgacaga gagctgaacg ggcaggggac agccaccatc ccaattggca gcacatcttc
     2161 agagacagaa acagcatcca cagtgggttc tgaagaaacc gtcatccagc caccttccac
     2221 cctcactcag ggggcagcag gccgaacggg gaaggcagta cagaagactg caatgcaatg
     2281 ctgcttggag tatgtccagc agtttctttc cagactcatc cacctctaca tccttcacag
     2341 tgactccttt cctcaagctt cggctgcaga ccatcagagc gatctcagtc gaatacaaag
     2401 agacacttca aaatgggaca gggattccca aggggatgca aaagaaagaa acatacacac
     2461 accaaaaaca tccaaagaat acctttctgc cttccttgct gcctgtcagc tcttcttaga
     2521 gtgctcaagt ttcccagtct acattgcaga gggaaaccat acatcagagt cacattctga
     2581 gaaacctgac actgactgtg agcatgccca ccctccacag tggctccaga ctctgatgag
     2641 tgcttgcagc caagcaagtg atttcagtgt acagagtgtt gctgtgtctc tagtcatgga
     2701 cctggtgggc ctgactcagt ctgttgccat ggtcactgga gaaaacatca acagcatgga
     2761 gcctgcacaa cccttaagtc caaaccaagg aagagtggct gtggttatta gacctcccct
     2821 cacacagggc aatctgaggt atatagctga gaagactgaa tttttcaagc atgtggcctt
     2881 aacattgtgg gaccagctgg gagatggaac tccacagcac catcagaaga gtgtggagct
     2941 gttttatcaa ttacataatt tggttccttc ttctagcatc tgtgaggatg ttgtaagtca
     3001 gcagctaacc cataaagata agaaagtaag gatggaagcg cacgcaaggt tcgcagttct
     3061 ttggcaccta acaagggacc tccacgtaaa taagtcatct tttgcacgct cctttgacag
     3121 gtcactgttc atcatgttag atagccttac tagtctagat ggttctacaa gctctgtggg
     3181 acaagcctgg ctgaaccagg tgctacaaag gcatgacatt gcaagagtgc tggaaccttt
     3241 gttactgctc ctgcttcatc caaaaactca gagggtttca gtgcagcgtg tgcaagcaga
     3301 acgttactgg agtaagactt cctgttatcc aggagaggaa aatgacaagc atttcatgca
     3361 aaattttacc tgcaacaatg taagccaagt gcacctcatt gcatccaaag gaagcagaga
     3421 aaagcctctc actatggatg aaatagagaa cttcagcctc acggttaacc cgttgagtga
     3481 caggctttcc ctcctgagca ccagcagcga gaccattcca atggttgtgt ccgactttga
     3541 cctgcctgat cagcagatgg aaatcctcca gagctctgac tctggatgct cacagtcttc
     3601 tgccggagac aactttagtt acgaagttga tcctgaaaat gtgagtgctc atgaagattc
     3661 tcacttggca aaggcaagct ccccagatga tgatgttcaa caagttgtct ttgacctgat
     3721 ctgtaaagtt gtgagtggcc tggaagcaga gtctgcgtca gttacatctg aattagaaat
     3781 agaatctctg cccccgaaga gtagtgattt cgatctaggt aaagaagcaa ccaaaactga
     3841 agaccaggcc ccccaacaca gtcagcatgt tttgctgagt gatgacagcc ctcggtttct
     3901 gtctgtgtct acagaggaag gctgtgagtg cctggccaat gggatctcca gaaatagctc
     3961 ctcaccttgt atttcaggaa cagcacagac tctgactgat tcttctgttt cctcagaaac
     4021 caaatctaga caaaggagtc acagtagtat tcaatttagc ttcaaagaaa aattatcaga
     4081 aaaaatctca gagaaagaaa caattgttaa ggaatcaggt aaacaaccag gtgcaaaacc
     4141 caaagtaaaa cttgccagaa aaaaggatga ggacaagaaa aaagctgcga gcgagaaact
     4201 gaagcaaaca aatgtcttct tcagtgacgg cctggactta gagaactggt acagctgtgg
     4261 ggagggtgaa atttctgaaa ttgaaagtga catgggttct ccaggatcaa ggaaatctcc
     4321 caacttcaac atccaccctc tctatcaaca tgtgctcctg tatctgcagt tgtatgattc
     4381 atcgaggact ctgtatgctt tttctgccat caagtccatc ttgaagagta accctgttgc
     4441 ttttgtaaat gccatttcaa caacaagtgt aaacaatgca tacactcctc agctgtctct
     4501 gcttcagaac ctgttggcca gacaccggat ctccgttatg ggcaaagact tttatagtca
     4561 cattccagtg gattcaaatc acaacttccg gagttccatg tacattgaaa ttcttatttc
     4621 cctctgctta tactacatgc gtagccatta cccaactcat gtcaaggtca ctacccaaga
     4681 cttaataggc aatcgaaaca tgcaaatgat gagtatagaa atcttgactc tcctctttac
     4741 agagctagca aaagtcatag agagctctgc aaaggggttc cctagtttta tctctgacat
     4801 gctgtctaaa tgcaaagttc agaaagtgat tcttcattgt ttgctgtcat ctatcttcag
     4861 tgtgcaaaaa tggcacagtg agaaaacagc aggtaagaac atggttgctg tggaggaagg
     4921 cttctcagaa gacagcctca tcaatttctc agaggatgaa tttgataatg gcagcacact
     4981 ccagtcacag cttctgaggg tgcttcagag gctaattgtc ctggaacacc gggtgatgac
     5041 tattcctgag gagagtgaag caggttttga ttttgttgtg tctgacctgg aacatgtcag
     5101 tccccatcag cccatgactt ctcttcagta cttgcatgct cagcccatca catgtcaagg
     5161 catgttcctc tgtgccgtga tcagagcttt gcatcagcac tgtgcatgca agatgcatcc
     5221 acagtggatt ggcctaatca catctactct gccttacatg ggaaaagttc tacaaagagt
     5281 cgtggtttct gtgacactac aactgtgcag gaatttggat aatctaattc agcagtacaa
     5341 atacgaaaca ggattatctg atagtaggcc cctgtgggtg gcatcaatta tcccaccaga
     5401 tatgatcctc actcttttgg aagggatcac agctattatc cattactgct tgctggatcc
     5461 gactacccaa taccatcaac ttttggtcaa tgtagaccag aagcacttgg ttgaagcccg
     5521 cagtgggatc ctctcaatcc ttcacatgat catgtcctct gtgaccctgc tttggagcat
     5581 actgcaccag gccgatgcgt ctgaaaagat ggggcttgca gcatctgcat ctgttaccac
     5641 aatcaatctg ggagccacaa agaacttgag acaacaaatc ctggaattac tgggacccat
     5701 ttcaatgaat catggtgttc atttcatggc tgccattgcc tttgtgtgga atggaagaag
     5761 acagaacaag accccttcca gaacaaaggt cattcctgca gccagtgaag agcagctctt
     5821 actagtagag ctggttcgct ccatcagtgt catgagagca gaaactgtta tccagactgt
     5881 gaaagaagtt ttaaagcagc ctccagccat agccaaggat aagaagcatc tttctctgga
     5941 agtgtgcatg cttcagtttt tctacgctta tatacaaaga attccagtgc ccaatttagt
     6001 ggatagttgg gcatcgctat tggtccttct gaaagattct atacagctga gtcttccagc
     6061 cccagggcag tttcttatac ttggggttct gaatgagttt attatgaaaa atcctagttt
     6121 ggaaaataaa aaagaccaaa gagaccttca ggatgtgact cacaaaatag tggatgctat
     6181 tggtgcaatt gctggttcct ctctggaaca gacaacatgg ctccgacgaa atctggaagt
     6241 taagccttct cccaaaataa tggtggatgg aactaattta gagtctgatg ttgaagatat
     6301 gctatctcct gcaatggaaa cctcaaacat aactccttct gtatatagtg tccatgcact
     6361 gacattgctc tctgaggtat tggctcatct tctggatatg gttttctaca gtgatgaaaa
     6421 agaacgtgtt atccctttac ttgtaaacat tatgcattat gttgtgccct acctccgaaa
     6481 tcacagtgca cataatgccc ctagttaccg agcctgcgtc caactgctca gcagtcttag
     6541 tgggtatcag tatacacgga gggcctggaa aaaagaggcc tttgaccttt tcatggaccc
     6601 cagcttcttt cagatggatg cttcctgtgt tagtcactgg agagcaatca tggacaacct
     6661 gatgacacat gataagacaa cattcagaga tttgatgact cgagtagccg tggcccagag
     6721 cagttctctc aatctttttg caaatcggga cgtggaacta gaacagagag ccatgcttct
     6781 caaaagattg gcctttgcca tttttagcag tgaaattgac cagtaccaga agtaccttcc
     6841 agacatacaa gagagattgg ttgagagtct ccgtttgccc caggtgccga cccttcactc
     6901 tcaagtgttc ctgtttttta gagtgttact tttaagaatg tctccacaac accttacctc
     6961 actctggcct accatgatca ccgaacttgt gcaggtgttc ttgctgatgg agcaggagct
     7021 cactgctgat gaagacattt cacggacgtc agggccgtct gcggctggtc tggagacaac
     7081 ctacactgga gggaatggct tctccacatc atacaacagc cagaggtggt taaacctcta
     7141 tctctcagcc tgcaagtttt tggatttggc tctggcattg ccctctgaaa atcttcctca
     7201 gtttcagatg taccgatggg cctttattcc tgaagcttca gatgactccg gcttagaagt
     7261 cagaaggcaa ggcatacatc agcgagaatt taagccatac gtggttcgac tagcaaaact
     7321 tcttcggaaa agagcaaagg acgaggagga ctttaagatt ttggagggat tggagatggc
     7381 caagcatcag aagaatccag aggaggacgg ctcggcgagg acactgggct gggaaccagg
     7441 gcacttgctg ctcaccctct gcaccatgcg caacatggag cagcttctgc ctttcttcaa
     7501 cgtcctcagc caagtcttca acagcaaagt cacgagccgc tgtggaggac actcagggag
     7561 ccccatcctc tactcaaact ccttcccaag caaggacatg aaactggaga atcacaaagc
     7621 attttccagc aaagccaggc aaaaaattga agagatgata gaaaaggact ttctggaagg
     7681 agtcataaag acttgaccac caccagtggt ccccagagcc taagcggaaa tgtaatactt
     7741 aaaacactgc tgagttgtac agtttttttc ttttatatat atgtgtatat gtaacaaaac
     7801 attattccag ttgtatttaa tttaaataat tgtaaataag agcttatgtc tgaatgtggc
     7861 ctgatcaagt ttaaatatat aggtggctca tacggatgat ggtgcctaca aggtctatat
     7921 ctgcatatat agtccattgt ttcactgtct tgggttgtct taaacctgca aaatacacac
     7981 catgttttct tttt
//
