LOCUS       NM_001399331            3272 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus delta/notch-like EGF repeat containing (Dner),
            mRNA.
ACCESSION   NM_001399331 XM_017596848
VERSION     NM_001399331.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3272)
  AUTHORS   Eiraku,M., Tohgo,A., Ono,K., Kaneko,M., Fujishima,K., Hirano,T. and
            Kengaku,M.
  TITLE     DNER acts as a neuron-specific Notch ligand during Bergmann glial
            development
  JOURNAL   Nat Neurosci 8 (7), 873-880 (2005)
   PUBMED   15965470
REFERENCE   2  (bases 1 to 3272)
  AUTHORS   Eiraku,M., Hirata,Y., Takeshima,H., Hirano,T. and Kengaku,M.
  TITLE     Delta/notch-like epidermal growth factor (EGF)-related receptor, a
            novel EGF-like repeat-containing protein targeted to dendrites of
            developing and adult central nervous system neurons
  JOURNAL   J Biol Chem 277 (28), 25400-25407 (2002)
   PUBMED   11950833
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Jan 6, 2022 this sequence version replaced XM_017596848.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1515024.1,
                                           SRR26360194.1672996.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-379               JAXUCZ010000009.1  93350190-93350568   c
            380-715             JAXUCZ010000009.1  93233892-93234227   c
            716-810             JAXUCZ010000009.1  93231502-93231596   c
            811-977             JAXUCZ010000009.1  93228518-93228684   c
            978-1123            JAXUCZ010000009.1  93199514-93199659   c
            1124-1277           JAXUCZ010000009.1  93158053-93158206   c
            1278-1391           JAXUCZ010000009.1  93133126-93133239   c
            1392-1616           JAXUCZ010000009.1  93103063-93103287   c
            1617-1739           JAXUCZ010000009.1  93076013-93076135   c
            1740-1853           JAXUCZ010000009.1  93062995-93063108   c
            1854-1985           JAXUCZ010000009.1  93053851-93053982   c
            1986-2232           JAXUCZ010000009.1  93042693-93042939   c
            2233-3272           JAXUCZ010000009.1  93035108-93036147   c
FEATURES             Location/Qualifiers
     source          1..3272
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q35"
     gene            1..3272
                     /gene="Dner"
                     /note="delta/notch-like EGF repeat containing"
                     /db_xref="GeneID:316573"
                     /db_xref="RGD:1359385"
     exon            1..379
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     CDS             104..2344
                     /gene="Dner"
                     /note="delta/notch-like EGF-related receptor; delta and
                     Notch-like epidermal growth factor-related receptor"
                     /codon_start=1
                     /product="delta and Notch-like epidermal growth
                     factor-related receptor precursor"
                     /protein_id="NP_001386260.1"
                     /db_xref="GeneID:316573"
                     /db_xref="RGD:1359385"
                     /translation="MPPRRAQAPGAPLLPVLALLPLLLGAGPQSSCLASPVPAAPLPA
                     PGPCASQPCRNGGVCTPRSVTDQEHPAVDAEPGYSCTCPAGVSGTDCQFVADPCASNP
                     CHHGNCSSSSSSSSSSSSSSSSSDSYLCICNDGYEGLNCEQPLPSIPTSGWTESMAPR
                     QLQPVPATQEPDIILPRSQATVTLPTWQPKTGQKVVEMKWDQVEVVPDVACGNASSNN
                     SAGGRLVSFEVPQNTSVKIRQDATALLILLWKVTATGFQQCSLIDGRSVTPLQAPGGL
                     VLLEEMLTLGPNHFIGFVNDSVAKSIVALRLTLVVKASTCVPGDGHSNDIECSGKGKC
                     ATKPSEATFSCTCEDQYIGTFCEEFDACQRKPCQNEASCIDANEKQDGSNFTCLCLPG
                     YTGELCQSKIDYCVLDPCRNGATCVSSLSGFTCQCLEGYFGSACEEKVDPCMSSPCQN
                     NGTCYVDGVHFTCSCSPGFTGPTCAQLVDFCALSPCAHGMCRSVGTSYKCLCDPGYHG
                     LYCEEEYNECLSAPCLNAATCRDLVNGYECVCLAEYKGTHCELYKDPCANISCLNGGT
                     CDSEGLNGTCICAPGFTGEECDIDINECDSNPCHHAGTCLDQPNGYTCHCPHGWVGAN
                     CEIHLQWKSGHMAESLTNMPRHSLYIIIGALCVAFILMLIILIVGICRISRIEYQGSS
                     RPAYEEFYNCRSIDSEFSNAIASIRHARFGKKSRPAMYDVTPIAYEDYSPDDKPLVTL
                     IKTKDL"
     exon            380..715
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            716..810
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            811..977
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1123
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            1124..1277
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1391
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            1392..1616
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            1617..1739
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            1740..1853
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            1854..1985
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            1986..2232
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
     exon            2233..3272
                     /gene="Dner"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcaccagcc actggcgccg ctgccaccgc catctccgcc gctagcagcg ccgccgccac
       61 cgcgcccagc tccgctccag cttctgcgtc ctctaggctc gctatgcctc cccgccgcgc
      121 ccaggcgccc ggtgccccgc tgctgcccgt gctggccctg ctgccgctgc tgctgggtgc
      181 tgggccccaa agcagctgct tggccagccc ggtgcccgcc gcgcccctgc ctgctccggg
      241 accgtgcgcc tcgcaaccct gtcggaacgg gggcgtgtgc actccgcgtt cggtgaccga
      301 ccaagagcat cctgcggtcg atgctgagcc cggctacagc tgcacctgtc ccgctggggt
      361 ttctggcacc gactgccagt ttgttgcaga tccttgtgcc agcaaccctt gtcaccatgg
      421 caactgcagc agcagcagca gcagcagcag cagcagcagc agcagcagca gcagcagtga
      481 cagctacctc tgcatttgca atgatggata tgaaggtctt aactgtgaac aaccacttcc
      541 cagtattcca acctctggct ggacagagtc catggcaccc agacagcttc agcctgtccc
      601 cgccacccag gagcccgaca taatcctgcc ccgctctcag gcaaccgtga ccctgccaac
      661 ttggcagcca aaaacagggc agaaagttgt agaaatgaaa tgggatcaag tagaggtggt
      721 ccctgatgtc gcctgtggga atgccagttc caacaactct gcaggtggcc gcctagtgtc
      781 ttttgaagtg ccacagaaca cctctgtaaa gattcgtcag gatgctaccg ctttgctgat
      841 cttgctatgg aaggtcacag ccacaggctt tcaacagtgc tccctcatag acgggcgcag
      901 cgtgacaccc ctccaggctc cagggggcct tgtcctgcta gaggagatgc tgaccttggg
      961 acccaaccac ttcattggtt ttgtgaacga ttctgttgct aagtccattg tggctttgcg
     1021 tttaacactt gtggtgaagg ctagcacctg tgtgcctggg gacggccact cgaatgacat
     1081 agagtgttcc ggaaaaggaa aatgtgccac gaagccatca gaggcaacct tctcctgcac
     1141 ctgcgaggac cagtacattg gcaccttctg tgaagaattt gatgcctgcc agaggaaacc
     1201 ctgccagaac gaggcgagct gtatcgatgc aaacgagaag caggatggga gcaatttcac
     1261 ctgcctttgt cttccgggtt atactggaga gctttgccag tccaagattg attactgtgt
     1321 cctagacccg tgcagaaatg gagccacatg tgtgtccagc ctcagcgggt ttacctgcca
     1381 gtgtttggaa gggtacttcg gctcggcttg tgaagagaag gtggacccct gcatgtcttc
     1441 tccatgccag aacaatggca cctgctatgt ggatggtgtg cacttcacct gcagctgcag
     1501 cccgggcttc acagggccta catgtgccca gcttgtggac ttctgtgccc tcagcccgtg
     1561 tgctcatggc atgtgccgta gcgtgggcac cagctacaag tgcctctgcg atccaggtta
     1621 ccatggcctg tactgcgagg aagaatacaa cgagtgcctg tctgccccat gcctgaatgc
     1681 tgccacctgc cgggaccttg tcaatggcta cgagtgtgtg tgcctggcag agtacaaagg
     1741 aacacactgt gaactgtaca aggacccctg tgctaacatc agctgtctga atggaggtac
     1801 ctgtgacagc gaggggctga atggcacatg catctgtgct cctgggttca caggtgaaga
     1861 gtgtgacatt gacatcaatg aatgtgacag taacccctgt catcatgctg gaacctgctt
     1921 ggatcagccc aatggttaca cctgccactg tcctcatggc tgggtgggag caaactgtga
     1981 aatccacctg cagtggaagt ctgggcacat ggccgagagc ctcaccaaca tgccgaggca
     2041 ctccctctac atcatcattg gagccctgtg tgtagccttc atcctcatgc ttatcatcct
     2101 gattgtgggc atctgccgca tcagccgcat tgagtaccag ggctcgtccc ggccagccta
     2161 cgaggaattc tacaactgcc gcagcattga cagtgagttc agcaacgcca tcgcatccat
     2221 ccggcatgcc aggtttggga agaaatctcg gcctgcaatg tacgacgtga ctcccattgc
     2281 ctacgaggat tacagccctg atgacaaacc cttggtcaca ctgattaaaa caaaagattt
     2341 gtaatttttt ggggggggga ttatttttca aaaactatga gatactaaga tcgtttaaat
     2401 atttttaaga aaattaaaaa gcttaagaaa tgtaaaatgt tagccgctca agagttttca
     2461 gtagactacc aaggaactaa ttttctgcag cttttagttt ggaaaaacaa aaaaaccagt
     2521 attttaaaaa accggaattt gtgaaatctg tggaccttgt tttactgtac tttcagctct
     2581 caacactgta tccttcaagt atgagctctt ttgacagtag acccaccatg aaacccagat
     2641 ggacttctgt ggttgttgca gaataaacct tatgtaggac gagtttcttt tgacgtgtga
     2701 tgctggcttt ccgagtagtg ttaggaataa gtagagtacg atgcataatt cagtataatc
     2761 gttacttaat atgatgtggt gtccgagatg tttgttttgt gaaaaaagaa aactagttaa
     2821 acttattatt cctaacctga atgaaattag cctctgcctt attctgtgca tgggtaagta
     2881 acttattttc tgcactgttc tgttgaactc tgaggaaatg tttttccagt ttgttttagt
     2941 cattttattt tgtagagtcc ttgaacttga ccttgtaaac ataaacacag aaagggtcta
     3001 gggaggaaaa cactgatcag tttcaaccta tagtttttcc tttaaaagtc aagtactttt
     3061 ctttttaatt gtaagtggat tcaattacgt tgcagatgtt tcttgctaag agatagtgat
     3121 gtgtaagagg tgctggtccc ttttgtagtg tttcttatag tgcacattta tttataccca
     3181 agacattttt gtggctgtat ttgattgata tgtgcttctt atgattcttg ctaatttcaa
     3241 agaatattga ataaacgtta gcaggtcgag ga
//
