LOCUS       XM_039109917            5227 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DnaJ heat shock protein family (Hsp40)
            member C6 (Dnajc6), transcript variant X3, mRNA.
ACCESSION   XM_039109917
VERSION     XM_039109917.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5227
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5227
                     /gene="Dnajc6"
                     /note="DnaJ heat shock protein family (Hsp40) member C6;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 32 ESTs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:313409"
                     /db_xref="RGD:1309900"
     CDS             165..2996
                     /gene="Dnajc6"
                     /codon_start=1
                     /product="putative tyrosine-protein phosphatase auxilin
                     isoform X3"
                     /protein_id="XP_038965845.1"
                     /db_xref="GeneID:313409"
                     /db_xref="RGD:1309900"
                     /translation="MYGFVFVSPVCPVVHNVKIFHLCDGVNLAEVRITRRTGASSPDM
                     EPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVSSYTKGDLDFTYVTSR
                     IIVMSFPMDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSW
                     PIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTP
                     GPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKAITVSPIPFFNK
                     QRNGCRPYCDVLIGETKIFSTCTDFERMKEYRVQDGKIFIPLNITVQGDVIVSMYHLR
                     STIGSRLQAKVTNTQIFQLQFHSGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLD
                     IEVQPQDKVIDLTPPWEHYCTKDVNPSILFSSQQEHQDTLALGGQAPADLPPDHPRNL
                     GQGGFFASLCWQDQKSEKSRCEEDHAALVNQESEQSDDELLTLSSPHGNADGDKPHGA
                     KKPGKKQQEPAAPPPPEEVDLLGLEGSDVSTNFSPLAAPPSNSELLSDLFGGGGATGP
                     AQAGQVGVEDVFHPSGPASAQSTPRRATTSASASPTLRVGEGATFDPFGAPAKPPGQD
                     LLGSFLNTSNASSDPFLQPTRSPSPTVHASSTPAVNIQPDIAGGWDWHAKPGGFGMGS
                     KSAATSPTGSTHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSP
                     QKASPQPMGGGWQQPAGYNWQQAQPKPQSSMPHSSPQNRPNYNVSFSAMPAGQSDRGK
                     GSTNLEGKQKAADFEDLLSSQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWI
                     EGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQ
                     PYEQYAKMIFMELNDAWSEFENQGQKPLY"
ORIGIN      
        1 tcctgcgttg agggacttcg cccccgggat cgctgactgt ctgtgaatga caaatccaaa
       61 gtcaggggtt gcagagtcag ccggacttgc ctgctctcgt gcagcagcgg gaggaaacag
      121 aatgaaagat tctgaaaata aaggttgaaa gtcagaaggg cctaatgtat ggatttgtgt
      181 ttgtctctcc agtctgtccc gttgtccaca atgtaaagat ctttcatctc tgtgatggtg
      241 tcaacttggc tgaagtgagg attacccgga gaactggtgc ctcatctcca gacatggagc
      301 ccagctatgg gggaggcctt tttgatatgg tgaaaggtgg tgcaggtagg ctattcagta
      361 acctgaagga caacttgaaa gacaccctca aagatacatc ctccagagtc atccagtctg
      421 ttagcagcta cacaaaggga gacctagact ttacttatgt cacttccagg attatcgtga
      481 tgtcctttcc tatggacagt gttgacatag gattcaggaa tcaggttgat gacatccgta
      541 gctttttgga ttccagacat cttgaccact acacagtata caacttgtca cccaagtctt
      601 accgaactgc caagttccac agccgggtct cagagtgcag ttggcccatc aggcaggccc
      661 caagtctaca caacctgttt gctgtgtgtc ggaatatgta taactggctg ctgcagaatc
      721 ccaaaaatgt ctgtgttgtc cactgcttgg atggacgggc cgcatcatca attctggttg
      781 gtgctatgtt cattttctgt aatctctact ctacgcctgg ccctgctgtt cgattactct
      841 acgcaaagcg accaggaatt ggactgtctc cgtcccacag gaggtactta ggctacatgt
      901 gtgacctact tgcagataag ccctaccgtc ctcacttcaa gccgctcaca atcaaggcaa
      961 tcactgtcag cccaattccc ttcttcaata aacagaggaa tgggtgccgc ccttactgtg
     1021 acgtactgat tggagaaact aaaatattct caacatgcac agacttcgaa cgaatgaaag
     1081 aataccgtgt ccaagatggg aaaatcttca tccctctgaa catcacagtc caaggtgacg
     1141 tcattgtttc catgtaccac ttgcggtcaa ccatcgggag ccggctgcag gctaaggtga
     1201 ccaacacaca gatattccag ctccagtttc attctggatt tataccactg gacacaacag
     1261 ttttaaagtt caccaagcct gagttggatg catgtgatgt accagaaaaa tatcctcagc
     1321 tgttccaagt gacactggat atagaagtac agccccaaga caaagtgatc gacctaactc
     1381 caccatggga gcactactgc acaaaggatg tgaaccccag catcctcttc tcctctcagc
     1441 aggagcatca ggatactctg gccttagggg gtcaggctcc agcagatctc cctccagacc
     1501 atccgaggaa tcttgggcaa ggaggcttct ttgcctctct gtgttggcaa gatcagaaat
     1561 cagagaagtc acggtgtgag gaggaccacg cagccctggt gaatcaggaa agcgagcagt
     1621 cggatgatga actactgact ctctcaagcc cacatggcaa tgctgatggt gacaagcctc
     1681 atggagccaa gaagcctggc aaaaagcagc aggagccagc tgcgcctcct cccccagagg
     1741 aggtggacct tctgggcctg gaagggtccg atgtgagcac gaacttctcc cccttggcag
     1801 ctcctcccag caattctgaa ctgctgagtg acctgtttgg gggtggaggt gccacaggtc
     1861 ctgcccaggc aggacaggtt ggagtcgaag atgtgtttca cccaagtgga cctgcgtctg
     1921 cgcagtccac accacgccga gccaccactt ccgcctctgc atcgccaacc ctaagagtgg
     1981 gagaaggtgc cacctttgac ccttttggag cccctgctaa gccaccaggt caggatttgt
     2041 tgggctcctt cctgaacaca tccaatgctt ctagcgaccc ctttctgcag cccacgagaa
     2101 gcccttcccc tacagtgcat gcttctagca ctcctgctgt gaacatccaa ccagacattg
     2161 ctggaggttg ggactggcat gccaaaccag gaggttttgg gatgggaagc aaatcggctg
     2221 ccaccagccc aacaggctca acacacggca cccctaccca tcagagcaag ccccagactc
     2281 tggatccctt cgctgacttg gggacactag gcagctcttc atttgccagc aaacccacca
     2341 caccaactgg attgggtgga ggatttccac ctctcagctc accacagaaa gcgtccccac
     2401 agcccatggg tggagggtgg cagcagccag ccggctacaa ctggcagcag gcacagccta
     2461 agccacagtc tagtatgcct cactcctccc ctcagaaccg acccaattac aacgtgagct
     2521 tctcagctat gcctgcaggg cagagcgacc gtggaaaagg atctactaac ttagaaggaa
     2581 aacagaaggc tgctgacttt gaagatctgc tttccagtca aggcttcaat gcccacaaag
     2641 acaaaaaggg gcctcgaaca atagctgaga tgagaaagga ggaaatggct aaggaaatgg
     2701 atcctgagaa actgaagatc ctggagtgga tagaaggcaa agagagaaac atcagagccc
     2761 tgctttccac aatgcacact gtgctgtggg ctggggagac caagtggaaa cctgtgggca
     2821 tggcagacct ggtgacgcca gagcaagtga agaaggtgta caggagagcc gtgctagtgg
     2881 tgcaccccga caaggctact gggcaaccct atgaacaata tgcaaagatg atcttcatgg
     2941 agctaaatga tgcctggtcc gaatttgaaa accaaggcca aaagcccttg tattaatttg
     3001 tgagcttttc tatgctggct gcagtcctgt gatcatgctt agtgtgtacc acggttctga
     3061 gattttcaca gatgaaccaa aaattctagt aatgtatttc cagtactaaa ctgttaagtt
     3121 cctcgtgaat tcatttctca tgataaggaa tgtgaacatt gggtttcttg aagtccgtag
     3181 caccgagagg aacactagtg aactgacctt gcagagtcat gaaatcccag cctgcccttt
     3241 ggggaagcct attcagcatt ttgcctgggg aaataggacc gtggccaccc aaggcggagg
     3301 cctgacatcc atctcactgt ctgagagtaa gatttatgag tggacattat ggtagttgga
     3361 ttacataatg gttttaagga aatgatttag ggattgtgta tgtgtggttt ttgtttttaa
     3421 agatgtaatt tgagcaatgg ctttacacaa actccaagaa tatcaccaac caagtatttt
     3481 ttaatggaaa cttactgaag cctttatagc ttcttcagtt tgtgtctttt ggtcaagagc
     3541 attaacaatc atagaagtgg ctaaatggtg ggaggtggtt atgcagaaat ctaggcatta
     3601 tccttaactt ttcctggatg cactaagccc aagcacatga tagctgaaga aaccaggagc
     3661 cctaagatgt gttgactcca ggtcagaact ttgggggtac tggctccttt cccctttaaa
     3721 tttgcagttg attaaagaaa aacctttaaa tgctaccacc accataattc caaacctatt
     3781 tgaaatcccc cttctaattg ttgccacgag gctcagtgct ctttcttttg cttagccaag
     3841 aaaacattct tcatgggtga cagtttgtaa agcagtttgg ctcattcaca ttcacacttt
     3901 gtgtagacct ggagttctgg tgattgcaaa ccagggggga aatggagaag ataacactga
     3961 gtactattta gaaagggttt ggttggggag agagctgtgg tgtgccttca gatccaattg
     4021 gatagcttgc cagtttgagg agtcagagtc ccacccaccc agtgaatctg ggcccccacc
     4081 cctgggatta tttccaatgg gtttgctgtt ggatgcatgt gaaaactatg taagaatgca
     4141 actttcccag accgactggt tgcaatttag tccagtgctc agagcttccc attgtgcaag
     4201 ggaggcagct ggtactgctg ggactttgct aggtctcctg gtgagcacac gcgcagcatc
     4261 tatctatcca tccatatatg catatgagta tgtctagtgt gcacatacac attcacaaag
     4321 cgggtggtca aaaagattat catgctgatc ttaaaaggtt cacattcaat attgtgaaaa
     4381 gctttcaaaa gtttgttttt caaagacaat cattttgttt gtttgtttct gttttaatat
     4441 tcttgtgaca aactaaaccg aaaaagcagc atgtcagaaa taattttggt tccatataga
     4501 cctctcttct ctcttttctt ttaaattata aaagttcatt atttattttg ccttttactg
     4561 ataatgtgaa attctcaaaa aaaatattct ctttaaaata tgcagttgta aactcttcaa
     4621 agtaaccatg acaacctagg tgttatttat taaggtatta tacaatgatg tctgacccag
     4681 tatgtgcttg tcctctttaa gattggaatg tgagacatgt tgctgtgacc tgttttattt
     4741 tttgttctgt tttgttttgt tttttttctg cctcattcca catttgtaga tattgtgtga
     4801 actacagtat ataatgacaa taattaagag gatattatgt ggctgccaca tacattttga
     4861 ggtggtagaa ctatattagc tttatatcat gttcgcatag gtcattaatg ttcatgattt
     4921 aaataccatt aaacgttatg cgattagcaa tgagaaagaa cccctcctta aatctgggag
     4981 tttccccacc gctcttcccc agatgcatta tgattctgga tgcctgtcta tctcaaaact
     5041 cttaacacat gcagaccaat aagttctgca ttccttttaa ataccaggtc gtgacagttt
     5101 gttgttggtc agattcactg tctcattcat atttattgta atatattttt gttttgtaaa
     5161 tacgttaaac aaaacaaaat gtcattgttt aaaatatttg taatgtatat taaaaagata
     5221 aaaaata
//
