LOCUS       XM_006238447            5290 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DnaJ heat shock protein family (Hsp40)
            member C6 (Dnajc6), transcript variant X2, mRNA.
ACCESSION   XM_006238447
VERSION     XM_006238447.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006238447.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006238447.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5290
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5290
                     /gene="Dnajc6"
                     /note="DnaJ heat shock protein family (Hsp40) member C6;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 32 ESTs, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 62 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:313409"
                     /db_xref="RGD:1309900"
     CDS             225..3059
                     /gene="Dnajc6"
                     /codon_start=1
                     /product="putative tyrosine-protein phosphatase auxilin
                     isoform X2"
                     /protein_id="XP_006238509.3"
                     /db_xref="GeneID:313409"
                     /db_xref="RGD:1309900"
                     /translation="MGATEAGGTKSPRLLSVLRRWRAGRRLRRMRSAFRAERSASSPD
                     MEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVSSYTKGDLDFTYVTS
                     RIIVMSFPMDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECS
                     WPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYST
                     PGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKAITVSPIPFFN
                     KQRNGCRPYCDVLIGETKIFSTCTDFERMKEYRVQDGKIFIPLNITVQGDVIVSMYHL
                     RSTIGSRLQAKVTNTQIFQLQFHSGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTL
                     DIEVQPQDKVIDLTPPWEHYCTKDVNPSILFSSQQEHQDTLALGGQAPADLPPDHPRN
                     LGQGGFFASLCWQDQKSEKSRCEEDHAALVNQESEQSDDELLTLSSPHGNADGDKPHG
                     AKKPGKKQQEPAAPPPPEEVDLLGLEGSDVSTNFSPLAAPPSNSELLSDLFGGGGATG
                     PAQAGQVGVEDVFHPSGPASAQSTPRRATTSASASPTLRVGEGATFDPFGAPAKPPGQ
                     DLLGSFLNTSNASSDPFLQPTRSPSPTVHASSTPAVNIQPDIAGGWDWHAKPGGFGMG
                     SKSAATSPTGSTHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSS
                     PQKASPQPMGGGWQQPAGYNWQQAQPKPQSSMPHSSPQNRPNYNVSFSAMPAGQSDRG
                     KGSTNLEGKQKAADFEDLLSSQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEW
                     IEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATG
                     QPYEQYAKMIFMELNDAWSEFENQGQKPLY"
ORIGIN      
        1 ccgcgcacgg atttctctgc agcaaagggc gcgtgtccgt gcccgcgcac acctgttcgt
       61 gcccggggtc ccgcgggtcc cgccgccacg cgcgggctgt ttcgccccgc cgcaagctcc
      121 tcctccatgg ccgcgtccac ccgccggcgg ccgggcacaa gcagacgcgc ggcggcggcg
      181 gcaaccctgg gcccaggcag cggcgggaag gggcgggcgc acggatgggc gcgaccgagg
      241 ccggaggcac taagagcccg aggctgctgt ccgtgctgcg gcggtggcgt gcgggccggc
      301 ggctgaggag aatgcgatcg gctttccggg cggagcggag tgcctcatct ccagacatgg
      361 agcccagcta tgggggaggc ctttttgata tggtgaaagg tggtgcaggt aggctattca
      421 gtaacctgaa ggacaacttg aaagacaccc tcaaagatac atcctccaga gtcatccagt
      481 ctgttagcag ctacacaaag ggagacctag actttactta tgtcacttcc aggattatcg
      541 tgatgtcctt tcctatggac agtgttgaca taggattcag gaatcaggtt gatgacatcc
      601 gtagcttttt ggattccaga catcttgacc actacacagt atacaacttg tcacccaagt
      661 cttaccgaac tgccaagttc cacagccggg tctcagagtg cagttggccc atcaggcagg
      721 ccccaagtct acacaacctg tttgctgtgt gtcggaatat gtataactgg ctgctgcaga
      781 atcccaaaaa tgtctgtgtt gtccactgct tggatggacg ggccgcatca tcaattctgg
      841 ttggtgctat gttcattttc tgtaatctct actctacgcc tggccctgct gttcgattac
      901 tctacgcaaa gcgaccagga attggactgt ctccgtccca caggaggtac ttaggctaca
      961 tgtgtgacct acttgcagat aagccctacc gtcctcactt caagccgctc acaatcaagg
     1021 caatcactgt cagcccaatt cccttcttca ataaacagag gaatgggtgc cgcccttact
     1081 gtgacgtact gattggagaa actaaaatat tctcaacatg cacagacttc gaacgaatga
     1141 aagaataccg tgtccaagat gggaaaatct tcatccctct gaacatcaca gtccaaggtg
     1201 acgtcattgt ttccatgtac cacttgcggt caaccatcgg gagccggctg caggctaagg
     1261 tgaccaacac acagatattc cagctccagt ttcattctgg atttatacca ctggacacaa
     1321 cagttttaaa gttcaccaag cctgagttgg atgcatgtga tgtaccagaa aaatatcctc
     1381 agctgttcca agtgacactg gatatagaag tacagcccca agacaaagtg atcgacctaa
     1441 ctccaccatg ggagcactac tgcacaaagg atgtgaaccc cagcatcctc ttctcctctc
     1501 agcaggagca tcaggatact ctggccttag ggggtcaggc tccagcagat ctccctccag
     1561 accatccgag gaatcttggg caaggaggct tctttgcctc tctgtgttgg caagatcaga
     1621 aatcagagaa gtcacggtgt gaggaggacc acgcagccct ggtgaatcag gaaagcgagc
     1681 agtcggatga tgaactactg actctctcaa gcccacatgg caatgctgat ggtgacaagc
     1741 ctcatggagc caagaagcct ggcaaaaagc agcaggagcc agctgcgcct cctcccccag
     1801 aggaggtgga ccttctgggc ctggaagggt ccgatgtgag cacgaacttc tcccccttgg
     1861 cagctcctcc cagcaattct gaactgctga gtgacctgtt tgggggtgga ggtgccacag
     1921 gtcctgccca ggcaggacag gttggagtcg aagatgtgtt tcacccaagt ggacctgcgt
     1981 ctgcgcagtc cacaccacgc cgagccacca cttccgcctc tgcatcgcca accctaagag
     2041 tgggagaagg tgccaccttt gacccttttg gagcccctgc taagccacca ggtcaggatt
     2101 tgttgggctc cttcctgaac acatccaatg cttctagcga cccctttctg cagcccacga
     2161 gaagcccttc ccctacagtg catgcttcta gcactcctgc tgtgaacatc caaccagaca
     2221 ttgctggagg ttgggactgg catgccaaac caggaggttt tgggatggga agcaaatcgg
     2281 ctgccaccag cccaacaggc tcaacacacg gcacccctac ccatcagagc aagccccaga
     2341 ctctggatcc cttcgctgac ttggggacac taggcagctc ttcatttgcc agcaaaccca
     2401 ccacaccaac tggattgggt ggaggatttc cacctctcag ctcaccacag aaagcgtccc
     2461 cacagcccat gggtggaggg tggcagcagc cagccggcta caactggcag caggcacagc
     2521 ctaagccaca gtctagtatg cctcactcct cccctcagaa ccgacccaat tacaacgtga
     2581 gcttctcagc tatgcctgca gggcagagcg accgtggaaa aggatctact aacttagaag
     2641 gaaaacagaa ggctgctgac tttgaagatc tgctttccag tcaaggcttc aatgcccaca
     2701 aagacaaaaa ggggcctcga acaatagctg agatgagaaa ggaggaaatg gctaaggaaa
     2761 tggatcctga gaaactgaag atcctggagt ggatagaagg caaagagaga aacatcagag
     2821 ccctgctttc cacaatgcac actgtgctgt gggctgggga gaccaagtgg aaacctgtgg
     2881 gcatggcaga cctggtgacg ccagagcaag tgaagaaggt gtacaggaga gccgtgctag
     2941 tggtgcaccc cgacaaggct actgggcaac cctatgaaca atatgcaaag atgatcttca
     3001 tggagctaaa tgatgcctgg tccgaatttg aaaaccaagg ccaaaagccc ttgtattaat
     3061 ttgtgagctt ttctatgctg gctgcagtcc tgtgatcatg cttagtgtgt accacggttc
     3121 tgagattttc acagatgaac caaaaattct agtaatgtat ttccagtact aaactgttaa
     3181 gttcctcgtg aattcatttc tcatgataag gaatgtgaac attgggtttc ttgaagtccg
     3241 tagcaccgag aggaacacta gtgaactgac cttgcagagt catgaaatcc cagcctgccc
     3301 tttggggaag cctattcagc attttgcctg gggaaatagg accgtggcca cccaaggcgg
     3361 aggcctgaca tccatctcac tgtctgagag taagatttat gagtggacat tatggtagtt
     3421 ggattacata atggttttaa ggaaatgatt tagggattgt gtatgtgtgg tttttgtttt
     3481 taaagatgta atttgagcaa tggctttaca caaactccaa gaatatcacc aaccaagtat
     3541 tttttaatgg aaacttactg aagcctttat agcttcttca gtttgtgtct tttggtcaag
     3601 agcattaaca atcatagaag tggctaaatg gtgggaggtg gttatgcaga aatctaggca
     3661 ttatccttaa cttttcctgg atgcactaag cccaagcaca tgatagctga agaaaccagg
     3721 agccctaaga tgtgttgact ccaggtcaga actttggggg tactggctcc tttccccttt
     3781 aaatttgcag ttgattaaag aaaaaccttt aaatgctacc accaccataa ttccaaacct
     3841 atttgaaatc ccccttctaa ttgttgccac gaggctcagt gctctttctt ttgcttagcc
     3901 aagaaaacat tcttcatggg tgacagtttg taaagcagtt tggctcattc acattcacac
     3961 tttgtgtaga cctggagttc tggtgattgc aaaccagggg ggaaatggag aagataacac
     4021 tgagtactat ttagaaaggg tttggttggg gagagagctg tggtgtgcct tcagatccaa
     4081 ttggatagct tgccagtttg aggagtcaga gtcccaccca cccagtgaat ctgggccccc
     4141 acccctggga ttatttccaa tgggtttgct gttggatgca tgtgaaaact atgtaagaat
     4201 gcaactttcc cagaccgact ggttgcaatt tagtccagtg ctcagagctt cccattgtgc
     4261 aagggaggca gctggtactg ctgggacttt gctaggtctc ctggtgagca cacgcgcagc
     4321 atctatctat ccatccatat atgcatatga gtatgtctag tgtgcacata cacattcaca
     4381 aagcgggtgg tcaaaaagat tatcatgctg atcttaaaag gttcacattc aatattgtga
     4441 aaagctttca aaagtttgtt tttcaaagac aatcattttg tttgtttgtt tctgttttaa
     4501 tattcttgtg acaaactaaa ccgaaaaagc agcatgtcag aaataatttt ggttccatat
     4561 agacctctct tctctctttt cttttaaatt ataaaagttc attatttatt ttgcctttta
     4621 ctgataatgt gaaattctca aaaaaaatat tctctttaaa atatgcagtt gtaaactctt
     4681 caaagtaacc atgacaacct aggtgttatt tattaaggta ttatacaatg atgtctgacc
     4741 cagtatgtgc ttgtcctctt taagattgga atgtgagaca tgttgctgtg acctgtttta
     4801 ttttttgttc tgttttgttt tgtttttttt ctgcctcatt ccacatttgt agatattgtg
     4861 tgaactacag tatataatga caataattaa gaggatatta tgtggctgcc acatacattt
     4921 tgaggtggta gaactatatt agctttatat catgttcgca taggtcatta atgttcatga
     4981 tttaaatacc attaaacgtt atgcgattag caatgagaaa gaacccctcc ttaaatctgg
     5041 gagtttcccc accgctcttc cccagatgca ttatgattct ggatgcctgt ctatctcaaa
     5101 actcttaaca catgcagacc aataagttct gcattccttt taaataccag gtcgtgacag
     5161 tttgttgttg gtcagattca ctgtctcatt catatttatt gtaatatatt tttgttttgt
     5221 aaatacgtta aacaaaacaa aatgtcattg tttaaaatat ttgtaatgta tattaaaaag
     5281 ataaaaaata
//
