LOCUS       XM_017591029            1115 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DnaJ heat shock protein family (Hsp40)
            member C5 beta (Dnajc5b), transcript variant X2, mRNA.
ACCESSION   XM_017591029
VERSION     XM_017591029.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017591029.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017591029.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1115
                     /gene="Dnajc5b"
                     /gene_synonym="RGD1562486"
                     /note="DnaJ heat shock protein family (Hsp40) member C5
                     beta; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:499579"
                     /db_xref="RGD:1562486"
     CDS             294..893
                     /gene="Dnajc5b"
                     /gene_synonym="RGD1562486"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 5B isoform X1"
                     /protein_id="XP_017446518.1"
                     /db_xref="GeneID:499579"
                     /db_xref="RGD:1562486"
                     /translation="MACNIPNQRQRAMSTSGESLYEILGLHKGASCEEIKKTYRKLAL
                     RHHPDKNPDDPSAAEKFKEINNAHTILTDNSKRNIYDKYGSLGLYVAEQFGDENVNTY
                     FMLSSWWAKTLFIIIGLLTGCYFCCCLCCCCNCCCGHCRPKTSTPEEEFYVSPEDLEE
                     QIRTDMEKDMDFPVVLQPTNTNEKTQLIREGSRSYCTDS"
ORIGIN      
        1 gacagagcag aggaagaaca ctactggaag gacccagaag gatcagccag ccatgccttc
       61 agttcaggga taaccaattg actgataaag taacaaatga aaagtaaccc gactccactg
      121 acctgtgcaa cccagcagga aggatggaaa agaggggcct ttagccttgc cacagtagga
      181 cgggtatgga gtagagctct gttcctcgct gcctccgtct tctgtctctc tgcacatcag
      241 tttccaggtt tggtgaaaac agcagaattg gagtcatagg aacagattga gaaatggcat
      301 gtaacatacc taatcaaaga cagcgggcta tgtcaacatc aggagaaagt ctgtatgaaa
      361 tccttggtct gcataaggga gcatcatgtg aagaaattaa gaaaacctac agaaaattag
      421 ccctgcgaca ccatccggac aagaatccag atgatccatc tgctgctgag aagtttaaag
      481 aaatcaacaa tgcccacaca atcctcactg acaactcaaa gagaaacata tacgacaagt
      541 atggatcatt gggactctac gtggccgagc aatttggaga tgaaaacgtt aacacatact
      601 tcatgctgtc aagctggtgg gcaaagaccc tgttcatcat cattggcctc ttgaccggct
      661 gctatttttg ctgctgccta tgctgctgct gcaattgttg ttgtggacat tgtcggccca
      721 agacatcgac accagaagag gagttctatg tgtcaccaga ggacctcgag gagcagatca
      781 gaactgatat ggagaaagat atggactttc cagttgttct ccagcctaca aatacaaatg
      841 agaaaacaca gctaatcaga gaaggatctc gaagttactg cacagactct tgatgatggg
      901 ctcatggagg gtccacagct cctctttttg gttcagccgt gtctctgggt tgtcatgagg
      961 gaggtgcaaa catgaaatgc tgtgaacata ttcacatttg tattttattt ttaggttaag
     1021 gggaagatga ttgctacata attttctcag actttctctt tgagtagaat cctaatgaaa
     1081 agcattcagt ttatgaataa aggcctgaag agttg
//
