LOCUS       XM_008762545            4977 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DnaJ heat shock protein family (Hsp40)
            member C5 (Dnajc5), transcript variant X2, mRNA.
ACCESSION   XM_008762545
VERSION     XM_008762545.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008762545.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008762545.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4977
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4977
                     /gene="Dnajc5"
                     /gene_synonym="Csp"
                     /note="DnaJ heat shock protein family (Hsp40) member C5;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 105 ESTs, 6 long SRA reads, 16 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 238 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:79130"
                     /db_xref="RGD:620516"
     CDS             276..872
                     /gene="Dnajc5"
                     /gene_synonym="Csp"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 5 isoform X1"
                     /protein_id="XP_008760767.1"
                     /db_xref="GeneID:79130"
                     /db_xref="RGD:620516"
                     /translation="MADQRQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHP
                     DKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLS
                     SWWAKALFVVCGLLTCCYCCCCLCCCFNCCCGKCKPKAPEGEETEFYVSPEDLEAQLQ
                     SDEREATDTPIVIQPASATETTQLTADSHPSYHTDGFN"
ORIGIN      
        1 actcacgtct ttttccgggg gcgcgctctg ccagtgcgtg agcgtgcgcg ttcttgctgc
       61 cgccagtgtt gcttccgccg tcctctgccg ctgctacggc tgtcgccgcc cgggatcctc
      121 aggccgagca gtaggccggc ccgctaccca gcacagcccg ggtacggaaa gcggagccgc
      181 ggaacaggtg gacgggcggg cgtgccgata ggagatgatt tctccgaatt cattaagtgc
      241 ttcttcggaa aaataatgca aaagactaac ctaacatggc tgaccagagg cagcgctcac
      301 tctctacttc cggggaatcg ttataccatg ttcttggact ggacaagaat gcaacctcag
      361 atgacattaa aaagtcctat cggaagctgg ccctgaaata tcaccctgac aagaaccctg
      421 ataacccaga ggctgcagac aagtttaagg agattaacaa cgcccacgca atcctgacag
      481 acgccacgaa aagaaacatt tatgacaagt atggctcgct ggggctctat gtggctgagc
      541 aatttgggga ggagaatgtc aacacctact tcgtactctc cagctggtgg gccaaggcgc
      601 tgttcgtcgt ctgtggcctc ctcacctgct gctactgctg ctgctgttta tgctgttgct
      661 ttaactgctg ctgtgggaag tgcaagccca aggcacctga gggtgaagag acagaattct
      721 acgtatcccc tgaagacttg gaggcacagc tgcagtctga tgagagggag gctacagaca
      781 caccgatcgt catacagcca gcatccgcca cagagaccac ccagctgaca gctgactccc
      841 accccagcta tcacaccgac gggttcaact aaattcagga gaggctgtga ttagaggatg
      901 aatcagcatc tggccactgc aaccttagaa tcatgaactg tagtcactga gatgggaagg
      961 cagccgtcaa cctgacccgc tgtggctggt cagggccact cccacctcct cttaagtcca
     1021 cccatctgtc aatccttgat acatgaagtg cgtagcatgc agtatttaaa gcagtgtagc
     1081 tacggtcttc ttctgtttta tccttttttt aatagcatgt atgggttatg ttcaatgtct
     1141 gtgttgtgga cgtgctgcag ctgggctgaa ttaactggat ggtagtgctt tttcgggttt
     1201 tcagccactt gggtccagtg aaggttcagc tgtctccttg tgcttacagg agtcaggtaa
     1261 gcacctggag ctacatctcc ttgttggcct ctgtgtcctg tgatatggtc tagtccgtgg
     1321 ctctgatctc atcctcaagg ctgcagacag ggctctgatt tcacctgcaa aggagggaac
     1381 tgggccccat cttccaggca ccaccagcat caggcgtttg cacggtgttc gtattgggaa
     1441 gctttcatag ggtctctgca gcgtctcact cggcctcctg acagttctcc tgttagatct
     1501 gctgtggaga gcgcaggtat gccccttctg agagtgggag cacactctgt gtaaggtcac
     1561 tgtcttgggt ctcctggcct tgtggactga aatcctatca ttggaggcat gtctcttgct
     1621 gtggtgtgtg ggaaatcatt tgtctctgtt ctgcaccttt ccaggtcaaa agctggattg
     1681 acggggccac agcctccttc cctcattcct gggtcatctt ccacattcct tcaagccaac
     1741 cttttaatct tttttggact tttaagaacc acaaatggca gcacctgcca cttagtcata
     1801 gtcagaaagt ctctgagccc agttgtgggt ggtatgtagc tccaagagtt tgagtaccca
     1861 ggacccagaa cctcctccct gtgcttacca gtgctccatc caccctgctc accttcgctt
     1921 ccacctgtca tcatcaatgc ctctggcaga gctggagtgt tgggttcctg gagcaggtgg
     1981 ctgggccctg gtgctcctgg ctcagaaggg ttggcttctt gggaagctgt gatagcagtc
     2041 actcacccta ggaggccagc tccaagccac agaagtcctt tgtgaacctc tctccagtca
     2101 gtattccagt cttggttcca gggtaccatg gtgggtggag ttggaaaatg tggttaccag
     2161 ggatttggag ctatcctacc ctcttacagt tagttggcta gttgcaccag acttcaatgc
     2221 caggttcctc cagaaccctc ccgttggctg ctgctgccca tctgcatttc cagtaccgat
     2281 gaagaaggag aaggctcatg tggtggctca gtggcccaga caaaccacca tgtgtttctg
     2341 aagcccaccc cgtccacctc ctggccccag ctcatcaggg ccttcaggga ccagatcagg
     2401 ttgtcaggaa gttacaagaa gaggcagcat tgtgaggaca aacatggcag tgattgaggg
     2461 aaaccatcta ggtcctggga gacactgatg ccagggttcc cagtcgaccc tacaccagaa
     2521 ctacatgagc cagaagctgg tttcaaggtc cttccatgga tttgttagtt ttgttcttta
     2581 aaggatttta gggatagtca ctaacatact cagtcaaaga tcctttgaat acatcaggcc
     2641 tttgtctggg tggaggggaa acatgcctgt agccccagca ctagtgcggc tgaggtaaga
     2701 ggatgttgac ttgtagacca atctggactt acacagtaag accctgactc aactaaaaca
     2761 acctaaatga agaatgagaa atctattgct tggcccatat ttggaacaaa ggaagaagag
     2821 aagtcactgg caatctgggg tgctggtccc agtacactag tcttggtgcc cttctcccac
     2881 gatgaccaga aaccaggtcc agagttgtag atgataagtt acgatctgta gcatatccct
     2941 cctgcatgta gctctgtggc ccttttcctc acatcttagc cgggtcctga gctgggactt
     3001 gtgctgctgt tagggtgaga gcacacaagt tttgaacaag tgtcttgtgg aattcgtaaa
     3061 gctaaataaa tcatgttaaa cttgaaaccc tccatatgta caacagtttc acggtgatga
     3121 tagtgattgt cacggccagt ggattttctg acctgtcccc gtgcagactc tgttgcaggg
     3181 ttttaccatg ttcacctaag gcccccttga tttcatttgc cctaagctaa gaactggtga
     3241 gtctcagatt ggcctgacta ttcctgtcca aatataaata ttaaatatat atagacacac
     3301 acactcccct aacttttata ctagtcggca atgtagatgg cactgtagtg tgttggcaag
     3361 ggagtgctgg agtctgcatg gaagttcatc ctgtgcagtg gatacccctt caggaccaga
     3421 gaaagtagtt aggagggacc ctggaggccc atctaccaag gctgctgcag tgtagacttt
     3481 tgtttgtgcc caatgatgtc ttttcttgtc ttccttttga ctgtatttta aaatcacttt
     3541 agataattct gtgcaatgtt tatgaccttt cctgcccttc taatgtttgg ttaacacagc
     3601 cagcacccaa tggggaaaag ccaggataag tggtagtggc aaatgtcttt aatccaagca
     3661 cttgggaggc agaggcaggc agctctctgt gagcctggtc tacagaacta gttccatgac
     3721 agccaggact acacacaaag aaggatacca gtgcttactg tggttagatt agctgctgga
     3781 tttgttcctg agtcctaaag ccagtctctt ctcggatgtc aagatttaat atctatccta
     3841 cccattgtcc tgctgaccca tggcttttat tacagatgaa ccttgtgcaa cagagctgcc
     3901 agtgttggag ctggcagtct ccagcgatag tgacttaatc attcaagctc tccctggagg
     3961 gtgtaggtgc tgtggtacag agagctggta ggccatgagc atcctcctct ggccttcagt
     4021 acacctttta ttgagggaca gctgtgaaca gtgtaaaccg tgactgatct tactcttttt
     4081 ccagtgtttg agctgtgaac ccatgtgtcc cagcactggc ctgttccttt ttattttggt
     4141 tgaattatcc tcctatggaa gtggcaaaat ctacatcttt actgtcctca caagctcagt
     4201 gtgtgttgtc acatgctgtg agtgtgggct gtggtgtgtg tcagtgtgtg tacatatgtg
     4261 tatatgtata tatcacacag caggcctgtc atgcctctgt ttggtggtaa agcaacaagt
     4321 acaataaaag tcagctccaa aacagcctgt ggtttcttga agtgttgggc aggggtaggg
     4381 tctcccagca aaacacaaaa ggaaaccctg agtttattgt gtacacagat acatagacct
     4441 gaatgcataa cccctggcca gcatgggctt cagatatgta tgtggctaga aggatgacca
     4501 tctaccaaat agatccctgg aaaccatgca aggatcacct gaacttcaag gatgtgaggg
     4561 tctaggacat gactagaaac tcttctcttg aaaacttgga ccagttttat aagtaccaga
     4621 ttaaaaaaac cagtcatcta gatgcatgta aaggatagcc tggttaggat ctctgccacc
     4681 aaggaaggac ctggatcaag tgcccccata ggatgtgctt ttggtatgat ttctaggaaa
     4741 gtgtctcaat actaagttgg ggaaagaaat tttcacttac agagagataa gagctaaatg
     4801 caagtgcatg taaagcctgt gctgatttta cccactgcta aagtcttgtg cacagcaggg
     4861 tacaaagctg ctgtcagttc aggttgaaaa ctatggtggt tccgcatggt gacctgtcta
     4921 aatgttgacc taaaataaag atagctgttg tataataaat gttttcactg cagacca
//
