LOCUS       XM_039084032            1082 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DnaJ heat shock protein family (Hsp40)
            member C4 (Dnajc4), transcript variant X2, mRNA.
ACCESSION   XM_039084032
VERSION     XM_039084032.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1082
                     /gene="Dnajc4"
                     /note="DnaJ heat shock protein family (Hsp40) member C4;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 27 ESTs, 2 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 207 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361717"
                     /db_xref="RGD:1308693"
     CDS             212..994
                     /gene="Dnajc4"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 4 isoform X1"
                     /protein_id="XP_038939960.1"
                     /db_xref="GeneID:361717"
                     /db_xref="RGD:1308693"
                     /translation="MDFWGPPFPSCPPAVVMPSLLLRLPLRLCRLWPCSPPTRLLTAA
                     TGQRPVPTNYYELLGVHPGASAEEIKRAFFTKSKELHPDRDPGNPALHSRFVELSEAY
                     RVLSREESRRNYDHQLHSASPSKSSGSTAEPKYKQQTHSSPWETPNAEYWAQFHSVRP
                     QEPESRKQQHKHNQRVLGYCLLLMVAGMGLHYVAFRKLEQVHRSFMDEKDRIITAIYN
                     DTRARARANRARIQQKHQQRQPPTEPSLPPESSRIMPQDTSQ"
ORIGIN      
        1 cctccttcgc acgccccctt atgatttggg tgggtaggga tgacctaggt gccgagcagg
       61 tgctccagac ttggaaggtg gtgctggaaa gcccagagca ccccttgtct gatcttagta
      121 aagaggcctt ccccggattt gcctttgtgg gaaactgagg caggttcttc cttctcccct
      181 gatccccgaa gtccggcccg attggaaccc aatggacttt tgggggcctc cctttcccag
      241 ctgcccgccc gccgtcgtca tgccgtccct gttgctccgg ctgcccctgc gcctatgccg
      301 gctgtggccc tgtagccctc ccacccgact cctcacagcc gcaacagggc agcggcctgt
      361 ccctactaat tactatgaac tgttgggagt gcatcctggt gccagcgctg aagagattaa
      421 acgtgctttc ttcaccaagt caaaagagct acaccctgac cgagaccctg ggaacccagc
      481 cctgcatagc cgttttgtgg aactgagtga ggcgtatcga gtgctcagcc gtgaggaaag
      541 tcgtcgtaac tatgaccacc agctgcattc agccagtcct tcaaagtcgt cagggagcac
      601 agccgagcct aagtataaac agcagacaca cagcagcccc tgggaaaccc cgaatgctga
      661 atactgggcc cagttccaca gtgtgaggcc acaggagccc gagtcaagga agcagcagca
      721 taaacacaac cagcgggtct tggggtactg ccttctgctc atggtggcag gcatgggcct
      781 gcactacgtc gccttcagga agctggagca ggtgcatcgc agcttcatgg acgaaaagga
      841 tcggatcatc acagccatct acaatgacac tcgggccagg gccagggcca acagagccag
      901 gattcagcag aagcaccagc agaggcagcc tccaacagaa ccctctctgc ctccagaaag
      961 ttccaggatc atgccccagg acacaagcca gtgagaggct tacctaggtg ggacctgtat
     1021 tggtcctccc cttgctgcct gtctaggact acacgtgcaa taaactcata ttcagactcc
     1081 ta
//
