LOCUS       NM_001013196             976 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus DnaJ heat shock protein family (Hsp40) member C4
            (Dnajc4), mRNA.
ACCESSION   NM_001013196 XM_342007
VERSION     NM_001013196.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 976)
  AUTHORS   Pagliarini,D.J., Calvo,S.E., Chang,B., Sheth,S.A., Vafai,S.B.,
            Ong,S.E., Walford,G.A., Sugiana,C., Boneh,A., Chen,W.K., Hill,D.E.,
            Vidal,M., Evans,J.G., Thorburn,D.R., Carr,S.A. and Mootha,V.K.
  TITLE     A mitochondrial protein compendium elucidates complex I disease
            biology
  JOURNAL   Cell 134 (1), 112-123 (2008)
   PUBMED   18614015
REFERENCE   2  (bases 1 to 976)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC088201.1.
            
            On Jun 25, 2006 this sequence version replaced XM_342007.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088201.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..976
                     /gene="Dnajc4"
                     /note="DnaJ heat shock protein family (Hsp40) member C4"
                     /db_xref="GeneID:361717"
                     /db_xref="RGD:1308693"
     exon            1..14
                     /gene="Dnajc4"
                     /inference="alignment:Splign:2.1.0"
     exon            15..128
                     /gene="Dnajc4"
                     /inference="alignment:Splign:2.1.0"
     exon            129..225
                     /gene="Dnajc4"
                     /inference="alignment:Splign:2.1.0"
     CDS             149..865
                     /gene="Dnajc4"
                     /note="DnaJ (Hsp40) homolog, subfamily C, member 4"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 4"
                     /protein_id="NP_001013214.1"
                     /db_xref="GeneID:361717"
                     /db_xref="RGD:1308693"
                     /translation="MLVRRNEVRHGNLPFPLRWSFPMLPRPVPTNYYELLGVHPGASA
                     EEIKRAFFTKSKELHPDRDPGNPALHSRFVELSEAYRVLSREESRRNYDHQLHSASPS
                     KSSGSTAEPKYKQQTHSSPWETPNAEYWAQFHSVRPQEPESRKQQHKHNQRVLGYCLL
                     LMVAGMGLHYVAFRKLEQVHRSFMDEKDRIITAIYNDTRARARANRARIQQKHQQRQP
                     PTEPSLPPESSRIMPQDTSQ"
     exon            226..319
                     /gene="Dnajc4"
                     /inference="alignment:Splign:2.1.0"
     exon            320..504
                     /gene="Dnajc4"
                     /inference="alignment:Splign:2.1.0"
     exon            505..669
                     /gene="Dnajc4"
                     /inference="alignment:Splign:2.1.0"
     exon            670..756
                     /gene="Dnajc4"
                     /inference="alignment:Splign:2.1.0"
     exon            757..951
                     /gene="Dnajc4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgaccaagga gcctctgccc gcccgccgtc gtcatgccgt ccctgttgct ccggctgccc
       61 ctgcgcctat gccggctgtg gccctgtagc cctcccaccc gactcctcac agccgcaaca
      121 gggcagcgat ttctaggctt ggctctggat gctggtcagg aggaatgaag tgaggcatgg
      181 gaatctgcct tttcctttga gatggagttt tcctatgttg cccaggcctg tccctactaa
      241 ttactatgaa ctgttgggag tgcatcctgg tgccagcgct gaagagatta aacgtgcttt
      301 cttcaccaag tcaaaagagc tacaccctga ccgagaccct gggaacccag ccctgcatag
      361 ccgttttgtg gaactgagtg aggcgtatcg agtgctcagc cgtgaggaaa gtcgtcgtaa
      421 ctatgaccac cagctgcatt cagccagtcc ttcaaagtcg tcagggagca cagccgagcc
      481 taagtataaa cagcagacac acagcagccc ctgggaaacc ccgaatgctg aatactgggc
      541 ccagttccac agtgtgaggc cacaggagcc cgagtcaagg aagcagcagc ataaacacaa
      601 ccagcgggtc ttggggtact gccttctgct catggtggca ggcatgggcc tgcactacgt
      661 cgccttcagg aagctggagc aggtgcatcg cagcttcatg gacgaaaagg atcggatcat
      721 cacagccatc tacaatgaca ctcgggccag ggccagggcc aacagagcca ggattcagca
      781 gaagcaccag cagaggcagc ctccaacaga accctctctg cctccagaaa gttccaggat
      841 catgccccag gacacaagcc agtgagaggc ttacctaggt gggacctgta ttggtcctcc
      901 ccttgctgcc tgtctaggac tacacgtgca ataaactcat attcagactc caaaaaaaaa
      961 aaaaaaaaaa aaaaaa
//
