LOCUS       NM_138856               2129 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus DnaJ heat shock protein family (Hsp40) member C21
            (Dnajc21), mRNA.
ACCESSION   NM_138856 XM_001056176 XM_001060252 XM_008760746
VERSION     NM_138856.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On or before Feb 25, 2022 this sequence version replaced
            XM_008760746.3, NM_138856.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643291.5798.1,
                                           SRR22582419.2074081.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-318               JAXUCZ010000002.1  61173591-61173908   c
            319-412             JAXUCZ010000002.1  61168317-61168410   c
            413-536             JAXUCZ010000002.1  61166685-61166808   c
            537-659             JAXUCZ010000002.1  61166329-61166451   c
            660-964             JAXUCZ010000002.1  61165513-61165817   c
            965-1116            JAXUCZ010000002.1  61164494-61164645   c
            1117-1204           JAXUCZ010000002.1  61160720-61160807   c
            1205-1363           JAXUCZ010000002.1  61158078-61158236   c
            1364-1406           JAXUCZ010000002.1  61157648-61157690   c
            1407-1579           JAXUCZ010000002.1  61155873-61156045   c
            1580-1655           JAXUCZ010000002.1  61147606-61147681   c
            1656-2129           JAXUCZ010000002.1  61146669-61147142   c
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q16"
     gene            1..2129
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /note="DnaJ heat shock protein family (Hsp40) member C21"
                     /db_xref="GeneID:192210"
                     /db_xref="RGD:621729"
     exon            1..318
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     CDS             222..1823
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /note="DnaJ homology subfamily A member 5; putative
                     regulation protein GS3; DnaJ (Hsp40) homolog, subfamily C,
                     member 21"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 21"
                     /protein_id="NP_620211.3"
                     /db_xref="GeneID:192210"
                     /db_xref="RGD:621729"
                     /translation="MKCHYEALGVRRDASEEELKKAYRKLALRWHPDKNLDNAAEAAE
                     QFKLIQAAYDVLSDPQERAWYDNHREALLKGGLDGEYQDDSLDLLHYFTVTCYSGYGD
                     DEKGFYAVYRDVFALIAKEELECMSEGGAEDFPTFGDSQSDYDTVVHPFYAYWQSFCT
                     QKNFAWKEEYDTRQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDKRVQ
                     AHRKLVEEQNAEKARKAEEMRRQQKLKQAKLAEQYREQSWMTMANLEKELREMEARYE
                     KEFGDGSDENEVEEQEAKDAVDGKDSEEAEETELYGDLYCPACDKSFKTEKAMKNHEK
                     SKKHREMVALLKQQLEEEEEQFSGAQMDENLLNANSEEETEDIPRQKRSKKQKKRKQK
                     SVQNFDDNFNENGTEEGGKIDPKETKSNEDNAKELENRPQENICITETTEACEDPKSE
                     AKSVPKSKGKKTKDVKKSVKVPAEPQPVSDVLISCATCHSEFPSRNKLFDHLKATGHA
                     RAPSAAASLDSVSSSRNKKEKRRNR"
     exon            319..412
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     exon            413..536
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     exon            537..659
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     exon            660..964
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1116
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1204
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     exon            1205..1363
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     exon            1364..1406
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     exon            1407..1579
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     exon            1580..1655
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
     exon            1656..2129
                     /gene="Dnajc21"
                     /gene_synonym="Dnaja5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccccctccg cgcgtccgcg tgccgcagcc cgcgttgtcc accgccgcgc gcctcctccg
       61 tcccgcgccg ctgccgccgc cgccgccggg ctcgctggct ggcgggctgc tggcgccggg
      121 ctcccaccgg aggagaggac agccagcgcc gccgctgccg cttctgcccg ggcccgggcg
      181 tcggccccgc cccgggcccc ggcccggtgt cgagccccgc catgaagtgt cactacgagg
      241 cactgggggt gcggcgcgac gccagcgagg aggagctcaa gaaggcctat cggaagctgg
      301 ccctgaggtg gcacccggat aaaaacctgg ataatgccgc agaagcagct gaacagttta
      361 aattaatcca agctgcgtac gatgtcctaa gcgaccctca ggagagagcg tggtatgata
      421 accacagaga ggccttactt aaaggaggcc ttgatgggga atatcaagac gacagcttgg
      481 atttgcttca ttacttcacg gttacctgtt attctggtta tggagacgat gaaaagggtt
      541 tctatgcagt gtatcgtgac gtctttgcgc tgattgcaaa agaagaactg gagtgtatgt
      601 cagagggagg tgctgaggat tttccgacct tcggtgactc ccagagcgac tatgacacgg
      661 tggtacaccc tttctacgct tactggcaga gtttctgtac tcagaagaat tttgcctgga
      721 aggaagaata tgatactcgg caagcctcga accgttggga gaaacgagca atggaaaaag
      781 aaaacaaaaa aattcgagac aaagcaagga aagagaaaaa tgaactggtg cgccagctgg
      841 tagcctttat tcgtaaacga gataagagag tgcaggcaca tcggaagctt gtggaggagc
      901 agaacgcaga gaaggcgagg aaggcagagg agatgaggag gcagcagaag ttgaagcaag
      961 ccaagctggc agagcagtac agagagcaga gctggatgac tatggccaat ttggagaagg
     1021 agctccggga gatggaagcg aggtacgaaa aggagtttgg agatgggtca gatgaaaacg
     1081 aagtggagga gcaggaggcc aaagacgcag tagatggtaa agacagtgag gaggctgagg
     1141 agactgagct ttacggtgac ctttactgcc cagcttgtga caaatccttc aagacggaaa
     1201 aggccatgaa gaatcacgag aagtccaaga agcatcggga aatggttgcc ttgttgaaac
     1261 agcagttgga ggaggaggaa gaacagtttt caggagctca aatggatgaa aatttattga
     1321 atgctaattc tgaggaagaa acggaagata taccaaggca aaagcgttct aaaaaacaga
     1381 agaaaaggaa acagaagtca gtgcagaact ttgatgacaa tttcaatgaa aatggaactg
     1441 aagaaggagg aaagattgat ccaaaagaga ctaagtcaaa tgaagacaat gccaaagaat
     1501 tagaaaacag gccccaagaa aatatctgta ttacagagac cacagaagcc tgtgaggatc
     1561 caaaaagtga agctaaaagt gttcctaaat ccaaaggaaa gaaaaccaaa gatgtgaaga
     1621 aatctgtcaa agtacctgct gagccacaac cagtgagtga tgtcctcatc agctgtgcaa
     1681 cttgccacag tgagtttcca tcccggaata aactgtttga tcatctaaag gctactggtc
     1741 atgcaagagc accttcagca gcagcatctt tagacagtgt atctagtagt cgaaacaaga
     1801 aagagaagcg tagaaataga taggaattct gttcattctt tttttttttt ttaaactgtc
     1861 tctagattct ggaaccaaaa actgaactga aataatctag agttaaaatt tcagtgatct
     1921 gcaattcatt gcattgtgga agattatttt tatcttataa agacattttt ctttaatata
     1981 tatttttaaa catttcacta gtgattgaat tctactttgc catctgaatt cacttgaatg
     2041 tttcctgaca ggtaaatatt ataaatgtgt attgggattt ctcatgtgaa cagaaatgta
     2101 cagggaaaat taaattattt tgacacata
//
