LOCUS       NM_053776               2124 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus DnaJ heat shock protein family (Hsp40) member C2
            (Dnajc2), mRNA.
ACCESSION   NM_053776 XM_342619
VERSION     NM_053776.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Chitale,S. and Richly,H.
  TITLE     Nuclear organization of nucleotide excision repair is mediated by
            RING1B dependent H2A-ubiquitylation
  JOURNAL   Oncotarget 8 (19), 30870-30887 (2017)
   PUBMED   28416769
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 2124)
  AUTHORS   Richly,H., Rocha-Viegas,L., Ribeiro,J.D., Demajo,S., Gundem,G.,
            Lopez-Bigas,N., Nakagawa,T., Rospert,S., Ito,T. and Di Croce,L.
  TITLE     Transcriptional activation of polycomb-repressed genes by ZRF1
  JOURNAL   Nature 468 (7327), 1124-1128 (2010)
   PUBMED   21179169
REFERENCE   4  (bases 1 to 2124)
  AUTHORS   Otto,H., Conz,C., Maier,P., Wolfle,T., Suzuki,C.K., Jeno,P.,
            Rucknagel,P., Stahl,J. and Rospert,S.
  TITLE     The chaperones MPP11 and Hsp70L1 form the mammalian
            ribosome-associated complex
  JOURNAL   Proc Natl Acad Sci U S A 102 (29), 10064-10069 (2005)
   PUBMED   16002468
REFERENCE   5  (bases 1 to 2124)
  AUTHORS   Okada,H., Attanucci,J., Giezeman-Smits,K.M., Brissette-Storkus,C.,
            Fellows,W.K., Gambotto,A., Pollack,L.F., Pogue-Geile,K.,
            Lotze,M.T., Bozik,M.E. and Chambers,W.H.
  TITLE     Immunization with an antigen identified by cytokine tumor
            vaccine-assisted SEREX (CAS) suppressed growth of the rat 9L glioma
            in vivo
  JOURNAL   Cancer Res 61 (6), 2625-2631 (2001)
   PUBMED   11289140
REFERENCE   6  (bases 1 to 2124)
  AUTHORS   Matsumoto-Taniura,N., Pirollet,F., Monroe,R., Gerace,L. and
            Westendorf,J.M.
  TITLE     Identification of novel M phase phosphoproteins by expression
            cloning
  JOURNAL   Mol Biol Cell 7 (9), 1455-1469 (1996)
   PUBMED   8885239
REFERENCE   7  (bases 1 to 2124)
  AUTHORS   Shoji,W., Inoue,T., Yamamoto,T. and Obinata,M.
  TITLE     MIDA1, a protein associated with Id, regulates cell growth
  JOURNAL   J Biol Chem 270 (42), 24818-24825 (1995)
   PUBMED   7559602
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Mar 26, 2021 this sequence version replaced NM_053776.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088838.1, AY322161.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-256               JAXUCZ010000004.1  14163845-14164100
            257-447             JAXUCZ010000004.1  14165872-14166062
            448-523             JAXUCZ010000004.1  14170810-14170885
            524-622             JAXUCZ010000004.1  14173458-14173556
            623-764             JAXUCZ010000004.1  14174764-14174905
            765-845             JAXUCZ010000004.1  14176017-14176097
            846-911             JAXUCZ010000004.1  14177329-14177394
            912-1003            JAXUCZ010000004.1  14179172-14179263
            1004-1125           JAXUCZ010000004.1  14179340-14179461
            1126-1275           JAXUCZ010000004.1  14180285-14180434
            1276-1364           JAXUCZ010000004.1  14183420-14183508
            1365-1434           JAXUCZ010000004.1  14183747-14183816
            1435-1619           JAXUCZ010000004.1  14185479-14185663
            1620-1720           JAXUCZ010000004.1  14186531-14186631
            1721-1828           JAXUCZ010000004.1  14186764-14186871
            1829-1983           JAXUCZ010000004.1  14188985-14189139
            1984-2124           JAXUCZ010000004.1  14189522-14189662
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q11"
     gene            1..2124
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /note="DnaJ heat shock protein family (Hsp40) member C2"
                     /db_xref="GeneID:116456"
                     /db_xref="RGD:620524"
     exon            1..256
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             193..2058
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /note="zuotin-related factor 1; gliosarcoma-related
                     antigen MIDA1; zuotin related factor 2; (rat homolog)
                     mouse id-associated protein 1; DnaJ (Hsp40) homolog,
                     subfamily C, member 2"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 2"
                     /protein_id="NP_446228.2"
                     /db_xref="GeneID:116456"
                     /db_xref="RGD:620524"
                     /translation="MLLLPSAAEGQGTAITHALTSASAVCQVEPVGRWFEAFVKRRNR
                     NASTSFQELEDKKELSEESEDEELQLEEFPMLKTLDPKDWKNQDHYAVLGLGHVRYKA
                     TQRQIKAAHKTMVLKHHPDKRKAAGEPIKEGDNDYFTCITKAYEMLSDPVKRRAFNSV
                     DPTFDNSVPSKSEAKENFFQVFSPVFERNSRWSNKKNVPKLGDMNSSFEDVDAFYSFW
                     YNFDSWREFSYLDEEEKEKAECRDERKWIEKQNRATRAQRKKEEMNRIRTLVDNAYSC
                     DPRIKKFKEEGKAKKEAEKRAKAEARRKEQEAKEKQRQAELEAVRLAKEKEEEEVRQQ
                     ALLAKKEKEIQKKAIKKERQKLRNSCKNWNHFSDNEADRVKMMEEVEKLCDRLELASL
                     QCLNEILASSTREVGKAALEKQIEEVNELMRKEKEEADARMRQASKNAEKSTGRSGSG
                     SKNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMNIHSSSGVKRTAKDVIGKAKSLQK
                     LDPHQKDDINKKAFDKFKKEHGVAPQADSAAPSERFEGPCIDSIPWTTEEQKLLEQAL
                     KTYPVNTPERWEKIAEAVPGRTKKDCMRRYKELVEMVKAKKAAQEQVLNASRARK"
     exon            257..447
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            448..523
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            524..622
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            623..764
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            765..845
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            846..911
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            912..1003
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1125
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1126..1275
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1364
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1365..1434
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1435..1619
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1620..1720
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1721..1828
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1829..1983
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1984..2124
                     /gene="Dnajc2"
                     /gene_synonym="MIDA1; Zrf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagtccgtag gggtgggatt ggcggccgcg ccgcgaaagc tccatcccgg aagtgcttac
       61 tggtcgtctc catgcgccgg ttcctgggcg taaagcctag gcgcgaggct cagcccagca
      121 ggtagtgagg acgcagaggg ccctgcctgc tggacgagag ccgcggcgtc cgcgggaaca
      181 gctccagcca gcatgctgct cctgcccagc gccgcggagg gccagggcac cgccatcacc
      241 cacgctctga cctccgcctc tgcagtctgt caagtcgaac ccgtgggaag atggtttgaa
      301 gctttcgtta agaggagaaa cagaaatgct tccacatctt ttcaggaact ggaagataag
      361 aaagagttgt cagaggaatc agaagatgaa gagttacagt tagaagagtt ccccatgctg
      421 aaaacacttg atcccaaaga ttggaagaat caagatcatt atgcagttct tggacttggc
      481 cacgtcagat acaaagccac acagagacag atcaaagcag ctcacaaaac aatggtcttg
      541 aaacatcacc cagacaagcg gaaagcggct ggggaaccca tcaaagaagg ggacaacgac
      601 tacttcactt gtataacgaa agcttatgaa atgttgtctg atccagtgaa aaggcgggca
      661 tttaacagtg tagatcctac ttttgacaac tcagttcctt ctaaaagtga agcaaaggag
      721 aattttttcc aagtgttttc tccagtgttt gaaaggaatt ccagatggtc aaataagaaa
      781 aatgttccca aacttggtga tatgaactca tcatttgaag atgtagatgc attttattcc
      841 ttctggtata attttgattc ttggagagaa ttttcttact tagatgaaga agaaaaagaa
      901 aaagcagaat gtcgtgatga gaggaaatgg attgaaaagc agaacagagc aacgagggca
      961 caaaggaaga aggaagagat gaacagaata agaactttag ttgataatgc ttacagttgt
     1021 gacccaagga taaaaaagtt taaggaagaa ggaaaggcca agaaggaagc agaaaagaga
     1081 gcaaaagcag aagccaggag gaaggaacag gaagccaaag aaaagcaaag acaagctgag
     1141 ttagaagctg ttcggttggc taaagagaaa gaagaggaag aagttagaca gcaagcattg
     1201 ttggccaaga aagaaaagga gatccagaaa aaagccatta aaaaggaaag gcagaaactt
     1261 cgtaactcat gcaagaactg gaatcacttc tcggacaatg aggcagaccg ggttaaaatg
     1321 atggaagagg tggaaaaact ctgtgatcgg cttgaactag caagcctaca gtgcttgaat
     1381 gaaatactgg catcatctac gagagaagtg ggaaaagctg cacttgaaaa acagatagaa
     1441 gaagtcaatg agctgatgag gaaagagaag gaggaagctg atgcccggat gcggcaagca
     1501 tctaagaatg cagagaagtc aaccggcaga agtgggagtg gcagtaagaa ctggtcagaa
     1561 gatgatctgc aattattaat taaggctgtc aatctcttcc ccgctgggac aaactccaga
     1621 tgggaagtca ttgctaatta tatgaacata cattcttctt ctggtgtcaa aagaactgcc
     1681 aaagatgtta ttggtaaagc taaaagcctc caaaaacttg accctcacca aaaagatgac
     1741 attaacaaaa aggcatttga taagtttaaa aaagaacatg gcgtggcccc tcaggctgac
     1801 agtgcggcac cctcagagcg atttgaaggt ccctgcatag attccatccc ttggacaaca
     1861 gaagagcaga aacttctaga acaggctttg aaaacatacc cggtaaatac tccggaaaga
     1921 tgggaaaaga tcgcggaagc cgttcctggc aggacgaaga aggactgcat gaggcgatac
     1981 aaggagctcg tggagatggt gaaagccaag aaagctgctc aggagcaggt gctgaatgcc
     2041 agcagagcca ggaagtgacg cgggcaggcg gtctcggtct gtgtgcactt ttataataaa
     2101 actcaaaata ctgtacacac ccca
//
