LOCUS       NM_001398603            1365 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus DnaJ heat shock protein family (Hsp40) member C18
            (Dnajc18), transcript variant 2, mRNA.
ACCESSION   NM_001398603 XM_006254546
VERSION     NM_001398603.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1365)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1365)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Dec 20, 2021 this sequence version replaced XM_006254546.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ158861.1, SRR26643293.76872.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-153               JAXUCZ010000018.1  27577383-27577535   c
            154-240             JAXUCZ010000018.1  27572324-27572410   c
            241-427             JAXUCZ010000018.1  27570125-27570311   c
            428-573             JAXUCZ010000018.1  27566623-27566768   c
            574-759             JAXUCZ010000018.1  27554146-27554331   c
            760-866             JAXUCZ010000018.1  27551110-27551216   c
            867-976             JAXUCZ010000018.1  27550051-27550160   c
            977-1149            JAXUCZ010000018.1  27548831-27549003   c
            1150-1365           JAXUCZ010000018.1  27543438-27543653   c
FEATURES             Location/Qualifiers
     source          1..1365
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..1365
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /note="DnaJ heat shock protein family (Hsp40) member C18"
                     /db_xref="GeneID:291677"
                     /db_xref="RGD:1310237"
     exon            1..153
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /inference="alignment:Splign:2.1.0"
     exon            154..240
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /inference="alignment:Splign:2.1.0"
     CDS             201..1274
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /note="isoform 2 is encoded by transcript variant 2; dnaJ
                     homolog subfamily C member 18; DnaJ (Hsp40) homolog,
                     subfamily C, member 18"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 18 isoform 2"
                     /protein_id="NP_001385532.1"
                     /db_xref="GeneID:291677"
                     /db_xref="RGD:1310237"
                     /translation="MAATLGSGERWTQAYIDAIRRNKYPEDKQPDSHDPCGCCNCMKA
                     QKEKKSENEWSQTRQGDGNATYTEEQLRGVQRIKKCRNYYDILGVSHNASDEELKKAY
                     KKLALKFHPDKNCAPGATDAFKAIGNAFAVLSNPDKRLRYDEYGDEQVTLTAPRARPY
                     HYYRDVEADISPEELFNVFFGGHFPSGNIHMFSNVTDDSHYYRRRHRHERTQAHKREE
                     DKSQTPYSAFVQLLPVLLIVTISVITQLLAANPPYSLFYKSTLGYTISRETQNLQVPY
                     FVDKNFDKAYRGASLRDLEKTIEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLRQ
                     KAESLKLENCAKLSKLIGLRRAG"
     exon            241..427
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /inference="alignment:Splign:2.1.0"
     exon            428..573
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /inference="alignment:Splign:2.1.0"
     exon            574..759
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /inference="alignment:Splign:2.1.0"
     exon            760..866
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /inference="alignment:Splign:2.1.0"
     exon            867..976
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /inference="alignment:Splign:2.1.0"
     exon            977..1149
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /inference="alignment:Splign:2.1.0"
     exon            1150..1365
                     /gene="Dnajc18"
                     /gene_synonym="RGD1310237"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggactcagt tcagctgctt agtgtactga actaattagg tcaagggcat gggtggattt
       61 cactctgact aactcatatg acttcaacac aaagccacag attttctcct gactctggac
      121 aatgtactgc agatgtgagc tgttagtcat aagcctccgg gacttgagag gctcagtcga
      181 cttgctgaca gaaaaccgat atggcggcca ctctgggcag cggggagcgc tggacccaag
      241 cttacattga tgcaattaga agaaacaaat acccagaaga caagcaacct gacagccatg
      301 atccctgtgg ttgctgtaac tgcatgaagg cacaaaagga aaaaaagtct gagaacgagt
      361 ggagtcagac ccggcaggga gatgggaatg ccacttacac agaagaacag ctacgtgggg
      421 tacaaagaat caagaagtgc agaaattact atgacattct gggtgtttct cacaatgcca
      481 gcgatgaaga gcttaagaaa gcatacaaga aactcgccct gaagtttcac cccgacaaga
      541 actgtgctcc tggagcaaca gatgccttca aagcgatagg aaatgccttt gcagtcctga
      601 gcaatcccga caagaggctc cgctatgatg agtatggaga tgagcaggtg actctcactg
      661 cacctcgagc aagaccgtat cattactaca gagatgttga agcagacatc tctccagaag
      721 aattatttaa tgtgttcttt ggaggacatt tcccttcagg aaatattcac atgttctcaa
      781 atgtgacaga cgacagtcac tattatcgca ggcggcaccg ccacgagagg acacaagcac
      841 ataagagaga ggaagataaa tctcagactc catattccgc gtttgttcag ctgcttccgg
      901 ttctgttgat tgtgactatt tctgtcatta ctcagctgct ggctgctaat ccgccatata
      961 gtctattcta taaatcgacc ctgggctaca ccatttctag agaaacgcag aacctgcagg
     1021 tgccttactt cgtggataaa aactttgaca aggcctaccg aggagcttct cttcgtgatc
     1081 tggagaaaac aatagagaaa gattatattg actacatcca gacaagttgt tggaaggaga
     1141 aacagcaaaa gtcggagctg accaatctgg cggggctgta cagagatgag cggctgcggc
     1201 agaaagcaga gtcgctgaaa ctcgaaaact gtgcaaagct ctccaagctc atcggcctcc
     1261 gcagggccgg ctgagagctt gatggccctg ctcacaatgg gggttcctac ccatactatt
     1321 acactgcaaa tcccatttta taatacaagt taggaaatat gagta
//
