LOCUS       NM_001014194            2613 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus DnaJ heat shock protein family (Hsp40) member C16
            (Dnajc16), mRNA.
ACCESSION   NM_001014194 XM_342969
VERSION     NM_001014194.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2613)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2613)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC089875.1.
            
            On Apr 20, 2005 this sequence version replaced XM_342969.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089875.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2613
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /note="DnaJ heat shock protein family (Hsp40) member C16"
                     /db_xref="GeneID:362652"
                     /db_xref="RGD:1359395"
     exon            1..36
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            37..221
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..2370
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /note="dnaJ homolog subfamily C member 16; DnaJ (Hsp40)
                     homolog, subfamily C, member 16; ER-resident protein
                     ERdj8; endoplasmic reticulum DNA J domain-containing
                     protein 8"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 16 precursor"
                     /protein_id="NP_001014216.1"
                     /db_xref="GeneID:362652"
                     /db_xref="RGD:1359395"
                     /translation="MELKRLSISWQFLIVLVLILQSLSALDFDPYRVLGVSRTASQAD
                     IKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRTNYDHYGDAGENQGYQ
                     QQREYRFRHFHENFYFDESFFHFPFNSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYL
                     IKITSDWCFSCIHIEPIWKEVVQELEGLGVGIGVVHAGYERRLAHHLGAHSTPSILGI
                     INGKISFFHNAVVHENLRQFVESLLPGNLVEKVTNKNYVRFLSGWQQENKPHALLFGQ
                     TPAAPLLYKLTAFAYKDYVSFGYVYVGLRGVEEMTRQYNVNIYAPTMLIFKEHINKPA
                     DAIQARGLKKQVIEDFITQNKYLLASRLTSQKLFHELCPVKRSHRQRKYCVVLLTAEA
                     NKLSKPFDAFLSFALANTQDTVRFVHVYSSRQQEFASTLLPDIEAFQGKSGVSILERR
                     NTAGRVVFKTLEDPWTGSESDKFVLLGYLDQLRKDPAFLSSEAVLPDLTDELAPVFLL
                     RWLYSVSDYLSDFWESLLHSNWREMMPLLSLIFSALFILFGTVIVQAFSDSNEERESH
                     PPDKEEVPEKAGKTEPSFTKESSSKIPKKGFVEVTELTDVTYTSNLVRLRPGHMNVVL
                     ILSNSTKTSLLQKFALEVYTFTGSSSLHFSFLTLDKHREWLEYLLEFAQDAAPIPNQY
                     DKHFMERDYTGYVLALNGHKKYFCLFKPLKTVDEETVGSCDLDSSRGKPPCGLGPKPL
                     KGKLSKLSLWMERLLEGSLQRFYIPSWPELD"
     exon            222..288
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            289..619
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            620..804
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            805..909
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            910..1068
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            1069..1199
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..1383
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            1384..1566
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            1567..1643
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            1644..1724
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            1725..1823
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            1824..1994
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
     exon            1995..2588
                     /gene="Dnajc16"
                     /gene_synonym="ERdj8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggactctgcg gccggttggg ccggtgccct ttcccgctct gggaaggaag agagatggaa
       61 ttgaaaaggt tgagcatttc ctggcaattc ttgatagtcc tcgttctgat cctgcaaagc
      121 ctgtctgcat tggattttga cccgtacaga gtcctagggg tcagccgcac agccagtcag
      181 gctgacatta aaaaggcata taagaagctc gctcgggaat ggcatcctga caaaaacaaa
      241 gaccctggag cagaggacaa gttcattcag atcagcaagg cttatgagat tctgtccaat
      301 gaggagaaga ggacaaacta tgaccactac ggtgatgcgg gtgagaacca aggctaccag
      361 cagcagcgcg agtaccgctt ccgccatttc cacgagaact tctattttga tgaatccttt
      421 tttcacttcc ctttcaattc cgagcggcgg gactcaatcg atgagaagta cttgttgcac
      481 ttttcacact acgtgaatga agtggttccc gacagcttca aaaaacccta cctcattaag
      541 atcacgtcgg attggtgctt tagctgtatc cacatcgagc ctatctggaa ggaagtggtc
      601 caggaactgg aaggactggg tgtggggatt ggtgttgtcc atgctgggta cgaaagacgc
      661 ctggcccatc acctgggagc acacagcacc ccctccatcc tagggatcat caatgggaag
      721 atctctttct tccacaatgc ggtagttcat gagaacctac ggcagttcgt ggagagcctt
      781 cttccaggga acttggtgga gaaggtcaca aataaaaatt atgtgcggtt cctctctggc
      841 tggcagcagg agaataagcc acatgccctc ctgttcggcc agacaccagc agcgccactg
      901 ctgtacaagt tgacggcctt tgcatacaaa gattatgtgt catttggata tgtgtatgtg
      961 ggcttgagag gtgtggagga gatgaccagg cagtacaacg tcaacatcta tgcccccacc
     1021 atgctgatct tcaaagagca catcaacaag cctgccgatg cgatccaggc tcgggggctg
     1081 aagaagcagg tcatcgagga cttcatcacc caaaacaagt acctgctggc gtcccggctc
     1141 accagccaga agttgttcca tgaactctgc cccgtgaagc ggtctcaccg acagagaaaa
     1201 tactgcgtgg ttctgctgac agctgaggct aacaaactaa gcaaaccctt tgacgccttc
     1261 ctgtcatttg cactggcaaa tactcaagac acggtgcgct ttgtgcacgt ctacagcagc
     1321 cggcagcagg agtttgccag caccttgcta ccggacattg aagcattcca ggggaagtca
     1381 ggggtgtcca tcttggaaag gcggaacaca gcagggaggg tggtgtttaa aaccctggaa
     1441 gacccctgga ctggcagtga gagcgataag ttcgtccttt tgggttatct tgaccagctg
     1501 cggaaagatc cagcatttct gtcctcagaa gcggtgctcc ctgacctgac tgacgaactg
     1561 gcccctgtgt ttctcctccg gtggctctac tctgtgtctg actacctctc ggacttctgg
     1621 gagagcctgc tgcacagtaa ctggcgggag atgatgccct tgctgtccct catcttctca
     1681 gccctcttca tcctgttcgg cactgtcatc gtccaggctt tcagtgactc aaatgaggag
     1741 cgggagtctc accctccgga taaagaggaa gtccctgaga aggctgggaa gactgagccg
     1801 agcttcacca aagagagcag cagcaaaatt cctaaaaaag gctttgtgga ggtgactgaa
     1861 ctcacagatg tgacgtacac cagtaatttg gtacgcctga ggccgggtca catgaatgtg
     1921 gtcctcatcc tgtccaattc caccaagaca agcctgctgc agaagtttgc tttggaagtc
     1981 tacacattca ccgggagcag cagcctgcac ttctccttcc taaccctaga caaacaccgg
     2041 gagtggctgg agtatttgct agagtttgct caggatgcag ctcccatccc aaaccagtat
     2101 gacaagcact ttatggaacg agactacact ggctacgtgc tggccctgaa tggccacaag
     2161 aagtatttct gccttttcaa gcccctaaag accgtggatg aggagaccgt gggctcctgt
     2221 gaccttgact cctcccgagg gaagccaccc tgtggccttg ggcccaagcc cctcaaaggc
     2281 aagctgagca agctgtcgct gtggatggag cgcctgctgg aaggctcctt gcagaggttc
     2341 tacatcccat cgtggcctga gctggactga gccgagggct cttcggattg tagcgtaccc
     2401 cagggacagg gttttccaga gagtctcgat tttagattcc tcttctagag cagtggctag
     2461 aagacctttc ctttgtcacc taggagtaaa gcgcaccaca ggtttgaccc ccagatgaaa
     2521 atcttcccct ttgggttttc ttgcccctga tgaatgccgc actacttaaa tagactgccc
     2581 agcccctcaa aaaaaaaaaa aaaaaaaaaa aaa
//
