LOCUS       NM_001108694            2192 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus DnaJ heat shock protein family (Hsp40) member C11
            (Dnajc11), mRNA.
ACCESSION   NM_001108694 XM_001076236 XM_342983
VERSION     NM_001108694.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Guarani,V., McNeill,E.M., Paulo,J.A., Huttlin,E.L., Frohlich,F.,
            Gygi,S.P., Van Vactor,D. and Harper,J.W.
  TITLE     QIL1 is a novel mitochondrial protein required for MICOS complex
            stability and cristae morphology
  JOURNAL   Elife 4, e06265 (2015)
   PUBMED   25997101
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  AUTHORS   Ioakeimidis,F., Ott,C., Kozjak-Pavlovic,V., Violitzi,F.,
            Rinotas,V., Makrinou,E., Eliopoulos,E., Fasseas,C., Kollias,G. and
            Douni,E.
  TITLE     A splicing mutation in the novel mitochondrial protein DNAJC11
            causes motor neuron pathology associated with cristae
            disorganization, and lymphoid abnormalities in mice
  JOURNAL   PLoS One 9 (8), e104237 (2014)
   PUBMED   25111180
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2192)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161936.1.
            
            On Apr 6, 2008 this sequence version replaced NM_001108694.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161936.1, SRR8487226.194680.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2192
                     /gene="Dnajc11"
                     /note="DnaJ heat shock protein family (Hsp40) member C11"
                     /db_xref="GeneID:362666"
                     /db_xref="RGD:1307731"
     exon            1..75
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     CDS             4..1683
                     /gene="Dnajc11"
                     /note="DnaJ (Hsp40) homolog, subfamily C, member 11"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 11"
                     /protein_id="NP_001102164.1"
                     /db_xref="GeneID:362666"
                     /db_xref="RGD:1307731"
                     /translation="MATALSEEELDNEDYYSLLNVRREASAEELKAAYRRLCMLYHPD
                     KHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERKRTPAE
                     IREEFERLQREREERKLQQRTNPKGTISVGVDATDLFDRYDEEYEDVSGSGFPQIEIN
                     KMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDL
                     QGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGI
                     QSAMNTSIVRDTKTCHFTVALQLGIPHSFALISYQHKFQDDDQTRLKGSLKAGFFGTI
                     VEYGAERKISRHSVLGAAVSIGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYA
                     TVGPLVVYLAVHRLIIRPYLRAQKEKDLEKQRENTASDILQKKQEAEAAVRLMQESVR
                     RIIEAEESRMGLIIVNAWYGKFVNDKSRKNEKVKVIDVTVPLQCLVKDSKLILTEASK
                     AGLPGFYDPCVGEEKSLRVLYQFRGVLHQVMMPDSEALRIPKQSHRIDADG"
     exon            76..205
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            206..279
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            280..381
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            382..510
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            511..633
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            634..707
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            708..897
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            898..983
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1100
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..1256
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            1257..1326
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            1327..1384
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            1385..1527
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            1528..1657
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
     exon            1658..2164
                     /gene="Dnajc11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagatggcga cggccttgag cgaggaggag ctggacaatg aagactatta ctcactgctg
       61 aacgtgcgca gggaggcctc tgctgaagag ctgaaggctg cctaccggag gctgtgcatg
      121 ctttaccacc cggacaagca cagggacccg gagctcaaat cacaggcaga gcgactgttt
      181 aaccttgtgc accaggctta tgaagtgctt agcgaccccc agacgagggc tatctatgat
      241 atatatggga agagaggcct ggagatggaa ggatgggagg tggtggaaag aaagagaaca
      301 ccagccgaga tcagagaaga gtttgagagg cttcagagag agcgagaaga gcggaaacta
      361 cagcagcgaa cgaaccccaa gggaaccatc agcgttggag tagatgccac tgacctcttt
      421 gaccgctatg atgaggaata tgaagatgtg tccggaagtg gcttcccgca gattgagatt
      481 aataagatgc acatatccca gtccattgag gcgcccttga cagctacaga cacagccatc
      541 ctctctggaa gtctctccac ccagaacggc aacggcggtg gctccattaa ctttgcactc
      601 cgacgtgtca cttctgcgaa gggatgggga gagttggagt ttggagctgg agacctccag
      661 ggacctttat ttggtctcaa gctgttccgt aatctcacac caagatgctt cgtgacgacc
      721 aattgtgctc tgcagttttc atcccgtggg atccggcccg gtcttactac agtgctagct
      781 cggaacctgg acaagaacac cgtgggctac ctgcagtggc gctggggtat ccagtcggcc
      841 atgaacacta gcatcgtcag ggacacgaag acctgccact tcactgtggc cctgcagctg
      901 gggatccctc attcctttgc actgatcagt tatcagcaca agttccagga cgacgaccag
      961 acgagactga aagggtccct caaggcaggc ttctttggga caatagtgga gtatggagct
     1021 gagaggaaga tctcccgaca cagcgtcttg ggtgcagctg tgagcattgg cgtccctcag
     1081 ggtgtgtctc tcaaagtcaa gctgaacagg gccagtcaga cctacttctt ccccatccac
     1141 ctgacggatc agctgctccc gagcgctgtg ttctatgcca ccgtggggcc actggtcgtc
     1201 tacttggcag tgcaccgatt gatcatccga ccttacctca gggcccagaa agagaaggac
     1261 ctggaaaagc agagagagaa cacagccagt gacatcctgc agaagaagca agaggcagag
     1321 gctgctgttc ggctgatgca ggaatctgtc cggaggataa tcgaagcaga ggagtcccga
     1381 atggggctta tcatcgtgaa cgcctggtac ggaaaatttg tcaatgacaa gagcaggaag
     1441 aatgagaagg tgaaggtgat tgatgtgacc gtacccctgc agtgcctggt gaaggactcc
     1501 aagctcatcc tcacagaggc ctccaaggcc gggctgcccg ggttctatga cccctgtgtt
     1561 ggggaggaga agagcctgcg agtgctgtac cagttccgag gcgtgctcca ccaggttatg
     1621 atgcctgaca gtgaggccct gaggatacca aagcagtctc acaggatcga tgcagatggg
     1681 taaaccgctt gggaaccttg aagaaagagg ccacgagaac cttttcctgg gaggctacag
     1741 atttggaagc agggaaaacc cagacatgag atgttttagt ttatttctcc agaaggtggc
     1801 actgtatcaa ttatgtgaag ggacatgcag acagcctagc ttcatggtgc tgtgggtaga
     1861 actgaggagc cccctggcca gaccccagca cggccatgtc ttccccaagg atcatgttcc
     1921 tagaggtcgc gcccctggtc ctcctcaagt ggctgtgcac agcagctctc tggaggcgtt
     1981 tggaacactc tgccctcaca catgggactg ctcttcctga agcccacact gctcgtggga
     2041 aacatggaaa ggaaggcgtg tcgtgtgctg ctcagtagac ttcccacaag ccacctctct
     2101 cttctgaaac gtcaccgaat ggactggaga ggactgcggg tttataaaac tgctttttat
     2161 ctgaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
