LOCUS       NM_001025411            3335 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus DnaJ heat shock protein family (Hsp40) member A4
            (Dnaja4), mRNA.
ACCESSION   NM_001025411 XM_217147
VERSION     NM_001025411.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3335)
  AUTHORS   Pencheva,N., Tran,H., Buss,C., Huh,D., Drobnjak,M., Busam,K. and
            Tavazoie,S.F.
  TITLE     Convergent multi-miRNA targeting of ApoE drives LRP1/LRP8-dependent
            melanoma metastasis and angiogenesis
  JOURNAL   Cell 151 (5), 1068-1082 (2012)
   PUBMED   23142051
REFERENCE   2  (bases 1 to 3335)
  AUTHORS   Hageman,J., van Waarde,M.A., Zylicz,A., Walerych,D. and
            Kampinga,H.H.
  TITLE     The diverse members of the mammalian HSP70 machine show distinct
            chaperone-like activities
  JOURNAL   Biochem J 435 (1), 127-142 (2011)
   PUBMED   21231916
REFERENCE   3  (bases 1 to 3335)
  AUTHORS   Lee,K.J., Terada,K., Oyadomari,S., Inomata,Y., Mori,M. and Gotoh,T.
  TITLE     Induction of molecular chaperones in carbon tetrachloride-treated
            rat liver: implications in protection against liver damage
  JOURNAL   Cell Stress Chaperones 9 (1), 58-68 (2004)
   PUBMED   15270078
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Mar 18, 2021 this sequence version replaced NM_001025411.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097438.1, SRR26643293.45329.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-543               JAXUCZ010000008.1  63981587-63982129
            544-682             JAXUCZ010000008.1  63982451-63982589
            683-863             JAXUCZ010000008.1  63988765-63988945
            864-968             JAXUCZ010000008.1  63991091-63991195
            969-1196            JAXUCZ010000008.1  63991820-63992047
            1197-1427           JAXUCZ010000008.1  63992958-63993188
            1428-1528           JAXUCZ010000008.1  63996829-63996929
            1529-3335           JAXUCZ010000008.1  63997030-63998836
FEATURES             Location/Qualifiers
     source          1..3335
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..3335
                     /gene="Dnaja4"
                     /note="DnaJ heat shock protein family (Hsp40) member A4"
                     /db_xref="GeneID:300721"
                     /db_xref="RGD:1310035"
     exon            1..543
                     /gene="Dnaja4"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..1744
                     /gene="Dnaja4"
                     /note="DnaJ (Hsp40) homolog, subfamily A, member 4"
                     /codon_start=1
                     /product="dnaJ homolog subfamily A member 4"
                     /protein_id="NP_001020582.1"
                     /db_xref="GeneID:300721"
                     /db_xref="RGD:1310035"
                     /translation="MPRGNQQPQDLDTTAEGSHPLQHPQKCNNPRQTPEHTPAVTEQK
                     AATPRGRGRVGPARTLPFQSKLSSAQGSRTRGPPASQRISERPNPGDPRKGKGPASGR
                     RDSRQRPTSTTKPESSTPKTPATEHPNMARGGNQNWSSGESDGQPEEQTSEENGDKMV
                     KETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKK
                     RDIYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMTRERRGKNVVHQLSVTLED
                     LYNGITKKLALQKNIICEKCEGIGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQT
                     VCIECKGQGERINPKDRCEDCSGAKVTREKKIIEVHVDKGMKDGQKILFHGEGDQEPE
                     LEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDDRVLIISSKS
                     GEVIKHGDLKCVRNEGMPIYKAPLEKGMLIIQFLVVFPEKQWLSLEKLPQLEALLPPR
                     QKVRITDDMDQVELKEFNPNEQSWRQHREAYEEDDDGPRAGVQCQTA"
     exon            544..682
                     /gene="Dnaja4"
                     /inference="alignment:Splign:2.1.0"
     exon            683..863
                     /gene="Dnaja4"
                     /inference="alignment:Splign:2.1.0"
     exon            864..968
                     /gene="Dnaja4"
                     /inference="alignment:Splign:2.1.0"
     exon            969..1196
                     /gene="Dnaja4"
                     /inference="alignment:Splign:2.1.0"
     exon            1197..1427
                     /gene="Dnaja4"
                     /inference="alignment:Splign:2.1.0"
     exon            1428..1528
                     /gene="Dnaja4"
                     /inference="alignment:Splign:2.1.0"
     exon            1529..3335
                     /gene="Dnaja4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggcgtcca aactaaggcc acctgaaggc cgccgttcac atcttcaaag gctaaggggg
       61 tcacccagcc ttcaagatgc ctagggggaa ccagcaacca caggatctcg acaccaccgc
      121 agaaggcagc catccactcc aacaccctca aaaatgcaac aatccgaggc agaccccaga
      181 gcacaccccc gcagtgaccg aacagaaggc ggccacaccc cgaggcagag gccgggtggg
      241 gccagcacgc acgctgccct tccagtccaa gctctcctcc gcccagggtt cgcgcacacg
      301 aggccctcct gcaagccagc ggatctcaga gcggcctaac cccggggacc cacgcaaggg
      361 caaggggcca gcctcggggc ggcgtgacag ccggcagcgg ccaacctcca ccacgaagcc
      421 cgaatcctcc acgccgaaaa cccccgccac cgagcatccc aacatggccc gtggcggcaa
      481 tcagaactgg agctccgggg agtcggacgg ccagccagag gagcagactt ccgaggagaa
      541 cggagacaag atggtgaagg agacccagta ctatgacatc ctgggggtga agcccagcgc
      601 gtccccggag gagatcaaga aggcctatcg gaagctggcg ctcaagtacc acccagacaa
      661 gaacccggat gagggcgaaa agtttaaact tatatcccag gcatatgaag tactttcaga
      721 tccaaagaaa agagacatct atgaccaagg tggagaacag gcaattaaag aagggggatc
      781 gggtagcccc agcttctctt cacccatgga tatctttgac atgttttttg gtggtggagg
      841 gcggatgact agagagagaa gaggcaagaa tgttgtacac cagctgtcag taactctgga
      901 agacttatat aatggaatca ctaagaaact ggccctccag aaaaatataa tttgtgagaa
      961 atgtgaaggc attggtggga agaagggatc cgtggagaag tgccctctgt gcaaggggcg
     1021 ggggatgcag atccatatcc agcagatcgg gccgggcatg gtgcagcaga tccagactgt
     1081 gtgcatcgag tgcaagggcc agggcgagcg tatcaacccc aaggaccgct gtgaggactg
     1141 cagcggtgcc aaggttaccc gagagaagaa gattatcgag gtacacgtgg ataaaggtat
     1201 gaaggatggg caaaagatac tgtttcatgg agaaggagat caggagcctg agctggaacc
     1261 tggtgatgtc ataattgtgc ttgatcagaa ggatcatagt gtctttcaga gacgaggcca
     1321 tgatttgatc atgaaaatga aaattcagct ctctgaagct ctttgtggct tcaagaagac
     1381 aataaaaacg ctggatgatc gagtcctcat catttcgtct aagtcaggtg aggtgataaa
     1441 gcatggagac ctcaagtgtg tccgcaatga ggggatgccc atctacaaag cccccctgga
     1501 gaaggggatg cttatcatac agttcttagt agtcttccct gaaaaacagt ggctttctct
     1561 agagaagctt cctcagctgg aggctctgct tccccctcgg cagaaggtga ggatcacaga
     1621 tgatatggat caggtggagc tgaaggagtt caaccccaac gagcagagct ggcgccagca
     1681 cagggaggcc tatgaggagg acgacgatgg gccccgcgct ggcgtgcagt gccagacagc
     1741 atgatggtgc ggtgtggcat ggcctggttg gactagcaca tgatgaatgt aaacttggca
     1801 caatgaaaat ggcatcgctt taatagcctc atgtttgggg tgtcctgtgt atgtgttcag
     1861 cagtcttcac cgcgagtatc ttttgggtgt tgtctctctt tagttgtaat gtaagttata
     1921 gcttgactca tatttaaatg ttttaagttc gatgccctcc tgtctgaata tggaatctgc
     1981 tcatttgtac tttcaggaca tattttggag atgccagtac cacactaact ttttgtgctt
     2041 cttagtggct ttgccatggt ttgttcccac agtaggccca gagagccaca cttggcccct
     2101 aacaaaggcc tagaaggtgg gtgtcgggcc accttctcta atctgtgttc ccctccccct
     2161 cctcccttgg cagagtcacc gagggtatga gctcaggtct gctagtaaca gttctgaatc
     2221 cagactctag aactcttagg tagtaaaagc acatgtggct tgcagtaggc ctggcatgcc
     2281 tggttatact gagtaggctg aactcacgct gcagtcaatc tcgggcctac tgttctttcc
     2341 ccttgactgg ttagaaaggg gtttgtttga acatctctct tggaagtgtc tgaacttccc
     2401 aagccttgtg atgacaagcc cattttaaat gataagccaa taaagccatt tgcctgtgac
     2461 cccgtacctt gttctttgtg gtcttaatga ttatctgttg acgacctttg cagtgttgtc
     2521 ccaccaaagt gctttccatg gcctctgtgc agctgcagag ccaaccaaag gggagtgctg
     2581 gtggcttagc tcccagcaca gcagcttaat gtcttaaagg tgtgcaatgg cacaggcccc
     2641 agtattacca ccctgttctc tagacaactc ttccctaaag gcccgttctt ctcactgtat
     2701 agccatactg caaagggctt tctgcttgtg atgtgtggtg agaactgacc caaccaggtt
     2761 ctagttagct ggcatcaaca tgactatgat agctgcttgg gacgggtcct agttactata
     2821 tttctggcaa gtagattgca ctttaaatga aggctacctc agcctctagc ctttactact
     2881 cccttctttt ctacaaatga agttaaatac tctgcttctt aagctcccag ggtaacctgt
     2941 cagatccacc gttacttggt ttttatggta ccagagagtt tgacacagac caggaccctc
     3001 ccctagggga gtcaacgtgc agatgagact catggccagt cgggtaagtc agctagcaga
     3061 cattgctgac tggtcaaaca actttctcaa agtgcagtgc tcactttgag cacaggccgt
     3121 ggtaagactt aaaactgctt cctccagtta gtaagcggac cacaagtcca gggtggcatt
     3181 tctgtgctgt gacaaatcaa tcactgctgg agagctgtca gcttgtagtg ggacaactag
     3241 gtcagctcct tgttatgaat ctgcagggcg ttgcttaact ttcccacctg tacatttttc
     3301 actttaaaat taaaattgag ctggtatgag acaaa
//
