LOCUS       NM_001024786            3789 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus dynein axonemal intermediate chain 4 (Dnai4),
            mRNA.
ACCESSION   NM_001024786 XM_233244
VERSION     NM_001024786.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3789)
  AUTHORS   Nagamachi,A., Matsui,H., Asou,H., Ozaki,Y., Aki,D., Kanai,A.,
            Takubo,K., Suda,T., Nakamura,T., Wolff,L., Honda,H. and Inaba,T.
  TITLE     Haploinsufficiency of SAMD9L, an endosome fusion facilitator,
            causes myeloid malignancies in mice mimicking human diseases with
            monosomy 7
  JOURNAL   Cancer Cell 24 (3), 305-317 (2013)
   PUBMED   24029230
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Aug 2, 2021 this sequence version replaced NM_001024786.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097402.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-215               JAXUCZ010000005.1  123105069-123105283 c
            216-390             JAXUCZ010000005.1  123089916-123090090 c
            391-575             JAXUCZ010000005.1  123084164-123084348 c
            576-691             JAXUCZ010000005.1  123083252-123083367 c
            692-848             JAXUCZ010000005.1  123078134-123078290 c
            849-988             JAXUCZ010000005.1  123075682-123075821 c
            989-1117            JAXUCZ010000005.1  123068849-123068977 c
            1118-1312           JAXUCZ010000005.1  123056454-123056648 c
            1313-1536           JAXUCZ010000005.1  123048955-123049178 c
            1537-1623           JAXUCZ010000005.1  123046605-123046691 c
            1624-1775           JAXUCZ010000005.1  123044714-123044865 c
            1776-1933           JAXUCZ010000005.1  123034871-123035028 c
            1934-2055           JAXUCZ010000005.1  123034226-123034347 c
            2056-2154           JAXUCZ010000005.1  123025603-123025701 c
            2155-2381           JAXUCZ010000005.1  123024990-123025216 c
            2382-2538           JAXUCZ010000005.1  123023782-123023938 c
            2539-3789           JAXUCZ010000005.1  123016480-123017730 c
FEATURES             Location/Qualifiers
     source          1..3789
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q33"
     gene            1..3789
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /note="dynein axonemal intermediate chain 4"
                     /db_xref="GeneID:313417"
                     /db_xref="RGD:1311027"
     exon            1..215
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     CDS             169..2580
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /note="WD repeat-containing protein 78; WD repeat domain
                     78; dynein intermediate chain 4, axonemal"
                     /codon_start=1
                     /product="dynein axonemal intermediate chain 4"
                     /protein_id="NP_001019957.1"
                     /db_xref="GeneID:313417"
                     /db_xref="RGD:1311027"
                     /translation="MPSSPTSTRKQTNFTASVSAQSRKSISFGNPKSTGGKGYAGANQ
                     SKIVASRTMTFLPEMKPAEKLNIASAKLVQVLDPRGVDVTPRPLYHPDPHAMPTKPSK
                     LLTSQEGSMGSDYISSYSLYQNTLNPSMLGQYTRSVIGSSSTVSKSSISTTESMTEDL
                     EDPSYKRDRLASFADVRVMRAPAEAAITKEELERNVEIFLMETETLRFFDLPTVMIST
                     DSEEAEKVIEKNINYEILCRNRLGNDLYVERMMQTFNGAPKNKDVQCDKIIMEEKGVM
                     ATTWDLYDSFNIPEASLAAKRSAYLSKASLLVRDRDPKIQDSESSSLMDIESVILAKS
                     HEDEEDNSEKILKSDKLHQDLFYMERVLMENVFQPKLAAYRQLPIYKELEPGQPEEDL
                     QVVNKVTEDEVKKDEEEEMETELEIEITTEQSTIPANLERLWSFSCDLTKGLNVSSLS
                     WNKANSDLLAVGYGNFGFKEQKRGMACCWSIKNPMWPERIYQSPYGVTSVDFSISSPN
                     LLAVGYHNGTVAIYNVQSNHNTPVLDSSESPQKHLGPVWQVQWIEQDRGTTGDDRREI
                     LVSISADGRISKWVIRKGLDCHDLMHLKRTTVTSSKKGIEKEKKGEALISRQAPGMCF
                     AFHTKDTNIYLAGTEEGLIHKCSCSYNEQYLETYRGHKGPVYKVTWNPFCPDVFLSCS
                     ADWGVMIWHQDNVKPFFTFYPTTYVVYDVAWSPKSAYIFAAANENRVEIWDLQISTLD
                     PLIVNVANPGIKFTTVLFAKQTDCLLVGDSDGQVAVYELRNMPTPTESGRGDVINVLL
                     GPKAN"
     exon            216..390
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            391..575
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            576..691
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            692..848
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            849..988
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            989..1117
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1312
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            1313..1536
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            1537..1623
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            1624..1775
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..1933
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            1934..2055
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            2056..2154
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            2155..2381
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            2382..2538
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
     exon            2539..3789
                     /gene="Dnai4"
                     /gene_synonym="RGD1311027; Wdr78"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcaacctcg agcggccagc caaccgcgcg gccgcttctt gagccaggct ctgcggtcgc
       61 catgacgccc ggcaaacatt cctgagctgc tgagggggca gttggagtcc gggcaccgca
      121 gaaccgctgg ggaaggggct cccaagccct aatctaagag tcgccaccat gcccagctct
      181 ccgacaagca cccgtaagca gaccaacttc accgcgagtg tctccgcaca atcaaggaag
      241 tccattagct ttggtaaccc aaaatcaacc ggagggaaag gatatgctgg tgcaaatcaa
      301 agcaaaatag tcgcatcaag aaccatgact tttttacccg agatgaagcc ggcagaaaaa
      361 ctaaacattg ctagcgccaa attggtacag gtgctcgatc cacgaggagt tgatgtcact
      421 ccccgacctc tctaccatcc agatccacat gccatgccaa caaagccgag caaactcttg
      481 acatcacaag aaggatcgat gggatcagat tatatttctt cctacagcct gtatcagaat
      541 acgttaaacc ccagcatgtt agggcagtac acgaggtcag tcatagggag cagcagtaca
      601 gtgtctaagt caagtatatc aacgactgaa tcaatgacag aggaccttga agatccatct
      661 tacaaaaggg atagattggc tagttttgca gatgtgcgag ttatgagggc cccagccgag
      721 gcagctataa caaaggaaga gctggagagg aatgtagaaa tctttctcat ggagacagaa
      781 actctgagat tttttgacct gccaacagtc atgatctcaa cagactcgga agaggctgaa
      841 aaagtcatag aaaaaaatat aaattatgaa atcctttgta gaaatagatt aggcaatgac
      901 ttatatgtag aaaggatgat gcagacattt aatggagctc caaagaataa agatgttcag
      961 tgtgacaaaa tcataatgga agaaaaaggt gtaatggcca ctacctggga tttgtatgat
     1021 tctttcaaca ttccagaagc ttcgctagca gcaaaacgat ctgcatattt aagtaaagca
     1081 agtttacttg ttagagaccg ggatccaaaa atacaagaca gcgaaagcag ttccctaatg
     1141 gacatagaaa gtgtaattct ggctaaaagt cacgaggatg aagaagacaa ctcagagaag
     1201 atactgaagt ccgataagct tcatcaggac ttattttaca tggaaagggt tctaatggaa
     1261 aatgtgtttc agccgaagct cgcagcctac cgtcaactcc ctatttacaa agaacttgaa
     1321 cctggacagc ctgaagaaga tttgcaagtg gtaaacaagg taacagagga tgaggtgaag
     1381 aaggatgaag aagaagaaat ggaaacggaa ctagagatag aaataaccac agaacagtca
     1441 acaataccag ctaatttgga acggctctgg tctttctcct gtgacttaac taaaggcctc
     1501 aacgtgagca gcctttcctg gaataaagca aactcagacc ttttggctgt tggctatggc
     1561 aactttggat ttaaagaaca aaaaagagga atggcttgct gctggtcaat aaagaacccc
     1621 atgtggccag agcgtattta ccagagtcca tatggagtta cttctgtgga cttctcaatc
     1681 agctcaccta atctgctagc agtcggctac cacaatggca ccgttgcgat ttataacgtg
     1741 cagagcaacc acaacactcc agttctggac agtagtgagt cacctcaaaa acatttggga
     1801 cctgtttggc aagtgcagtg gatagagcag gacagaggaa ctaccgggga tgatagaaga
     1861 gaaatcttgg tgtctatatc agccgacgga aggatctcca aatgggtcat tcgcaaagga
     1921 ctggattgtc atgatttgat gcacctgaag cgaaccactg ttacaagcag caaaaaggga
     1981 atagaaaagg aaaagaaggg cgaggccttg atatctcgac aggctcctgg aatgtgcttt
     2041 gcttttcaca ccaaggacac aaacatctat ctggccggta cagaagaagg ccttattcac
     2101 aagtgttctt gttcatacaa tgaacaatac ctagagacct atagaggaca taagggtccg
     2161 gtgtataaag tcacgtggaa cccgttctgc cctgacgtct tcttgagctg ttctgcagat
     2221 tggggtgtaa tgatctggca ccaggacaac gtgaagccgt tttttacttt ttacccaact
     2281 acttacgttg tttatgatgt tgcctggtcc cccaaatccg catatatttt tgctgctgca
     2341 aatgagaata gagtagagat ttgggacctt cagatcagca ctttggaccc tctgattgtg
     2401 aatgttgcta accctggaat caagtttaca accgtcctct ttgccaagca gacagattgc
     2461 cttctagtgg gagacagcga cggacaggtc gcagtctatg agctgagaaa tatgcctact
     2521 cctacggaaa gtggtcgggg agatgtaatc aacgttctgc ttgggcccaa ggcaaactag
     2581 ataggatgat ctgtcactct ggttacacat tgttcctctt taagggaaag gggataacat
     2641 catatgctgt aagcttaaga ttttggtttt aagagagcag tatgtagcct ataacttcca
     2701 tttaaattaa attagctctt atttcagaca catgtgacta gtttataatt taaggtaagc
     2761 taaagattgt cttaattttt taaagatatt tctgctccac ttcttggtca ttcttaaaaa
     2821 tatctattag caactatgta tacctataaa atgtccaaat tgcttagaaa atgatttctt
     2881 aaaaagttta gacattttta gagttactta atccacagtc attagaagat gcaattccag
     2941 caccggtcaa accaggttcc caagctcgct gtttggggct tccaatcact gtcacacagc
     3001 cccttgggga ctgagtgagt actcacactg gactgggagc atcaaggctg ccctcttcaa
     3061 tctgagccct gaaactacac aactttgtca gagcacttag caagctatgg tggaacacca
     3121 gatacaagca tcatgttatc tgactagcca gcatcctact cccttgtcaa taatctaaaa
     3181 tgcatcgtta ccttcctctg aaaggccaga gtcatctgca gtgatgtttg agcccagttt
     3241 taaattgtct cagcaagaaa acagaaggac atacagacca ggcagcctag tgagagattg
     3301 gacagtaagg gtgggtatac accccacttc ccaaacagag agagagagac ctggaagggg
     3361 tgatccatgt gggtccccta acaagtgttc atgtgttaaa tggggtcata gggcacgaca
     3421 gccttttcca taaggtgttt tgagtggagg aaagaggcca gggtgtatga agctcacaaa
     3481 gaatttagag atcgtttgtg tctctgctgg tgataagagt ccgcctcagg gcaggaagaa
     3541 ctacctacta cacgcagaca catgacagta agaactacct actacacaca atcattgcct
     3601 cacagccttt atttctttgg ggctgtgtgt taaacaaaag caaggtgatt ttagctggct
     3661 cttgggttta ggttagatca taaagattac atattttctg ctggtctaag tcactatgct
     3721 ggtctttcta aaaaaaataa actatgttac tttgagtaaa aaaaaataaa aacttgattt
     3781 agttgaaaa
//
