LOCUS       NM_001109206            4800 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus dynein axonemal assembly factor 9 (Dnaaf9), mRNA.
ACCESSION   NM_001109206 XM_001081185 XM_575237
VERSION     NM_001109206.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4800)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473949.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001081185.1, XM_575237.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4800
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..4800
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /note="dynein axonemal assembly factor 9"
                     /db_xref="GeneID:499891"
                     /db_xref="RGD:1565616"
     exon            1..176
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     CDS             94..3621
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /note="uncharacterized protein C20orf194 homolog"
                     /codon_start=1
                     /product="dynein axonemal assembly factor 9"
                     /protein_id="NP_001102676.1"
                     /db_xref="GeneID:499891"
                     /db_xref="RGD:1565616"
                     /translation="MDSFAPQQPGLSRARLAGTFGRGAASVSCSRLRQVQSVLTQSSK
                     SQPDGILCILGIDSRYNEGCRELANYLLFGLYSQNTTDFEKTGFSEEILDDVIMLIKS
                     DSVHLYCNPVNYRYLLPYVAHWRNLHFHCMTENEYEDEEAAEEFKISSFVDMVRDCSR
                     IGIPYSSQGHLQIFDMFVVEKWPIVQAFALEGIGGDGFFTMKYELQDVSLNLWNVYSR
                     MDPMSLENMLSKDLAVFEHQWTSFFANFDIEIPFLLELSESQAGEPFRSYFSHGMISS
                     HVTENSPHRQPFVLFGTHSTRDNLRTGSFNFPSEGHLVRNTGPAGSIAKHMVAQCVSP
                     KGPLACSRTYFFGATHVPYLGDDEKLPRTTEQIRLLSQVYAAVTEAVLAAIACYAKTC
                     SLAKAKEVAEQTLESGLVFTELVPFKAELRSKVAFHIHAVNNQGRIVPLNNEDSLSFV
                     KTASMSVYDIPDVLGGGGCLGSVVFSESFLTSQILVKEKDGTITPETSYIILTAAIPR
                     FCSWLVEDNEVKLCEKTLQATKGDDCFLGTLLTGGKGAYLYSNSLQSRPEEGNVYFFS
                     GGLLFSHRHHASVVISKDHMNSVSFYDGDSTSVVAALLIDFRSSILPHLPVHFHGSSN
                     FLMIALFPRSKIYQAFYSEVFSPWQQQDNSGLSLKVIQEDGLSVEQKKLYSNAQKLFS
                     ALSHPAQDWSSPKLLSAKLPELDRFLQHFALGSIGQEPVMRAHLLSLLQQAETSPTHR
                     LESDKVVISIVTGLPGCHASKLCAFLVTLHKEYGRWMVYRQVMDSSECFHAAHFQKYL
                     SSALEAQQNRSARQSAYIRKKTRLLVALQGYTDVIDVVQALQTHPDPNVKSYFTIGAV
                     TVCVEPLSCYMEHRFLFPKCLDQCSQGVVSNVVFTSHTTEQRHPLLVELQTLIRASNP
                     TAAFILAENGIVTRNEDIELILSENSFSSPQMLRSRYLLFPGWYEGKFDAGSVFPLMV
                     QICVWFDRPLEKTRFVTKCKAIQSSLKPSPFSGNIYHILGKVKFSDSEKTMEVCHNTL
                     TNSLTIVPVLEGPTPPPNSRSTPQDNGQPECYLVFIGCSLKEDSLKDWLRQSAKQRPQ
                     RKALKTRGMLTQQEIRNIHVKRHLDPLPAGYFYNGTQFVNFFGDKTDFHPLMDQFMND
                     YVEEANREIERYNRELEQQEYRDLFEQKP"
     exon            177..256
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            257..376
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            377..501
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            502..598
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            599..705
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            706..783
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            784..882
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            883..938
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            939..1074
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1156
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1157..1193
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1194..1281
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1282..1358
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1359..1403
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1404..1449
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1450..1561
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1562..1632
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1633..1683
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1684..1771
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1772..1875
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            1876..2022
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            2023..2111
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            2112..2210
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            2211..2328
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            2329..2417
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            2418..2576
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            2577..2702
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            2703..2740
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            2741..2876
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            2877..2963
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            2964..3070
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            3071..3145
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            3146..3348
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            3349..3414
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            3415..3508
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
     exon            3509..4800
                     /gene="Dnaaf9"
                     /gene_synonym="RGD1565616"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcggcgcacc ctcgctccgc cctgccgctg gcccgctgcg gtgccggccc cggcgaccct
       61 ctgcggcccc caggtcctcc cctgccagcc tccatggact cgttcgcccc ccagcagccg
      121 gggctgtccc gcgcgcgcct cgctggcacc tttggccgtg gggcggcctc cgtcagctgc
      181 agccgactgc gccaggttca aagtgtcctg acccagagca gcaagtctca acctgacggg
      241 attctctgca tcctaggaat tgacagcagg tacaacgaag gctgtagaga gctggcaaat
      301 taccttctgt ttggtttata cagtcagaat accactgatt ttgagaaaac tggattttct
      361 gaagaaatcc tagatgatgt gatcatgttg attaaatcag acagtgtcca tctgtactgt
      421 aatcctgtca actaccgcta tctcttgcct tacgtggcac attggagaaa cctgcatttc
      481 cattgcatga cggaaaatga gtatgaagat gaggaagcag cagaagaatt taagatttcc
      541 agctttgtgg acatggttcg agactgtagt agaattggca ttccttatag ctcccaaggt
      601 cacttacaga tatttgatat gtttgtggta gagaagtggc caattgtaca ggcctttgca
      661 cttgaaggca ttggaggaga tggatttttt accatgaagt atgagttgca ggacgtgagt
      721 ttgaatctat ggaatgtcta cagcagaatg gatcctatgt ctctggagaa catgctttca
      781 aaagacctgg ctgtgtttga gcatcagtgg acaagcttct ttgctaattt tgacatagaa
      841 atccctttcc tactggaact ttcagaatct caggcgggtg agccattcag aagctacttc
      901 agtcatggaa tgatctccag ccatgttact gaaaacagcc ctcatcggca gccttttgtt
      961 ctctttggta cccactccac tcgagacaac ctgagaactg gcagctttaa cttcccttct
     1021 gaggggcacc tggtgcgcaa cactggccct gcagggagca ttgctaaaca catggtcgct
     1081 cagtgtgtct caccaaaggg gcctctggcg tgctcaagga catacttctt tggagctact
     1141 catgttcctt acctgggtga tgatgagaag ctgcccagga caactgagca aattaggctc
     1201 ttatcccagg tatatgctgc tgttactgag gctgttttgg ctgccattgc atgctatgct
     1261 aaaacttgca gtctggcaaa ggccaaggag gtagcagaac aaactctgga gtctgggtta
     1321 gtgttcactg agttggttcc gttcaaagca gaactacgct ccaaggtggc ttttcatatt
     1381 catgctgtga ataaccaggg aagaattgtg cctctgaata atgaagatag cttatccttt
     1441 gtgaaaacgg cgagcatgag cgtctatgac atcccagacg tgctgggagg aggaggatgc
     1501 ttaggatctg tggtcttctc cgagtcgttc ttgacgtctc agatcctggt taaagaaaag
     1561 gatggcacta ttaccccaga gaccagttac atcatcctga cagctgccat ccccagattc
     1621 tgttcctggc tggtagaaga taatgaagta aaattgtgtg agaaaaccct acaagcaaca
     1681 aagggggacg actgtttctt gggcactttg ctaacgggag gaaaaggagc gtatctttat
     1741 tctaacagtc tgcagtccag gcctgaggaa gggaatgtgt atttcttctc tggtggcctt
     1801 ctattttctc accgtcatca tgcaagtgtc gtcatttcca aggaccacat gaattctgtc
     1861 tccttctatg atggggactc caccagcgtg gtggctgccc ttctcataga cttccgaagc
     1921 tccatccttc ctcatctccc agttcatttc cacggatcaa gcaatttcct gatgattgcc
     1981 cttttcccca gatcaaagat ttatcaagca ttttactcag aggtcttctc cccttggcaa
     2041 cagcaagata actcagggct ttctttaaaa gtgatccagg aggatggatt atctgtggaa
     2101 caaaagaaat tgtactccaa tgcacagaag ctcttcagtg ccctgagcca tcctgcacag
     2161 gactggagct ccccaaaact gctctcagct aaactccctg agttggaccg gtttctccag
     2221 cattttgccc ttggcagcat tggtcaggag cctgtgatgc gagcccatct tcttagcctg
     2281 ctgcagcaag ctgagaccag ccccactcac agattagaga gtgacaaggt cgtcatcagc
     2341 attgtaactg gtctcccagg ctgtcatgct agcaagctct gtgctttcct ggtcactcta
     2401 cataaggagt atggcagatg gatggtatac cgccaagtca tggacagctc tgaatgtttc
     2461 catgctgccc acttccagaa atacctttcc agtgccctgg aggcccaaca gaaccgctct
     2521 gcccgccagt cagcctacat ccgcaagaag accaggctgt tggtagcact gcaaggctac
     2581 acagacgtca ttgatgtggt ccaagccctg cagactcacc cagatccaaa tgtcaagtcc
     2641 tacttcacca ttggtgctgt cacagtgtgt gtggaacccc tgagctgcta catggagcac
     2701 agatttctct ttcctaaatg tcttgaccag tgttcacaag gcgtggtgag taacgtggta
     2761 tttaccagcc acacaacgga gcagaggcac cctctccttg ttgagctgca gaccctcatc
     2821 agggcttcca atcctactgc agccttcatt cttgcagaaa atgggattgt tacaaggaat
     2881 gaagacattg agctgattct ctcagaaaat agtttttcca gtccccagat gctacgttct
     2941 cgatacttac tgttccccgg ctggtatgaa ggtaaatttg atgctggatc cgtctttcca
     3001 ctaatggttc agatctgtgt gtggttcgac cgtcccctgg agaaaacccg ctttgtgacc
     3061 aagtgtaaag caattcagtc ttccctcaag ccaagtccct tctctggaaa catctaccac
     3121 atccttggca aagtgaagtt ttcagattct gaaaagacta tggaggtctg ccacaacact
     3181 ttaaccaact ccctgaccat tgtgccagtt ttggagggac ccacgccacc ccccaactca
     3241 agaagcactc ctcaagacaa tgggcagcca gaatgctacc tcgtgttcat cggctgctcc
     3301 ctgaaggagg acagcctcaa agactggctt cgacagtcag ctaagcagag gcctcagagg
     3361 aaagctctga aaaccagggg catgctgacc cagcaagaga tcaggaacat ccacgtgaaa
     3421 cgccacttgg accccctacc tgcaggctac ttttacaatg gcacccagtt tgttaacttc
     3481 tttggggaca agaccgattt tcacccactc atggaccagt tcatgaatga ttatgtggaa
     3541 gaggccaatc gggagatcga gaggtacaac agagagctgg agcagcagga gtaccgtgat
     3601 ctctttgagc agaagcccta aagaaagctg ggcccgtgcc caccagagat gaatgaatga
     3661 atgggtgtcc agctttcctg gaggcccctc ctgaaggggc tctctgtcct ccctggcctg
     3721 tgcctgccag tgtagtacat gttgtctttg ttctctctgc tctctgcacc ctgaaaggca
     3781 ttgtgtggac cactgagtga gggcagggca taggatgagc agctagcact gcccgtgtac
     3841 cagcagctct gggtgtggca aaggctcctt tgccacatgt aaggctgagg agaagccttt
     3901 ggcttgcaca ttatactgct ggatttagaa ggcccctggt tgcctaagca gtggccaggc
     3961 agagacccac aatgccttcc agatgagagc acttctgtgg gatgaatgga agtcagatag
     4021 gatgctttct agaaatgcaa ggctccttca ctaatagcag cacctcgtgg gcttggtcct
     4081 tgagttcctc tgtggcatca cttggttctc taattcagga agtagagcag gcctgcagcc
     4141 tgagcctggc ctgcctcacc tcccagttaa ggtgtatagc ctgtaacttg tcttgggccc
     4201 aaggcctaac tatctggggg ctattggtct ctagcaccca gtctcccaaa ccactaccat
     4261 ggaaccaata catccagaaa acctcccaaa actgcccctg gccctggatt tgtttacttg
     4321 gtttccaaag cccaggaatt tgaaaaattc tgatatggaa attagaattc cctccagtgg
     4381 ttttgattta ggttggacct tacagcaaag gtaaacttgc attcccaaga ctgaccttcc
     4441 taatcagtgt gaggagtgag gtcactaagg gtgatatctg ctaggacttg agtgcctctg
     4501 ctgcttggac tgtaaacatg ttctgagtcc cctgtactgt ttgcatgcct taggaagaag
     4561 cacatagtaa aaccagcatc gtgttctata tgtaatgtag agaggtttga ggacgggccc
     4621 tggcacagag gagaggtaag atggagcatc tgggtccgtg tctcagtgac acagcactct
     4681 gggcaaatag caaagtagta agcaaggact tgtcaataag tatacctgtg ttaggagaaa
     4741 aacactggag gctgaccaaa ccaaattaca agtcccattg ggtaagaaat cttgcattaa
//
