LOCUS       NM_001014115            1978 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus dynein axonemal assembly factor 8 (Dnaaf8), mRNA.
ACCESSION   NM_001014115 XM_340753
VERSION     NM_001014115.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1978)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1978)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083674.1.
            
            On Apr 1, 2005 this sequence version replaced XM_340753.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083674.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1978
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1978
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /note="dynein axonemal assembly factor 8"
                     /db_xref="GeneID:360479"
                     /db_xref="RGD:1359596"
     exon            1..39
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /inference="alignment:Splign:2.1.0"
     exon            40..198
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /inference="alignment:Splign:2.1.0"
     CDS             91..1536
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /note="uncharacterized protein C16orf71 homolog; dynein
                     axonemal-associated protein 1"
                     /codon_start=1
                     /product="dynein axonemal assembly factor 8"
                     /protein_id="NP_001014137.1"
                     /db_xref="GeneID:360479"
                     /db_xref="RGD:1359596"
                     /translation="MTSKDKAVVSLPVSPWDAILKAAKDQLPSLDSDSSLSDCEEEEP
                     FIFQRNQPVLIPDLTEELAEDPVGVDESGTWVTAGRSPSPEPLLVPGRLAIEPRSEWM
                     VRSKDLAHQERRGPGWSCQSCVKSSPILLDTKEAPAWPEGRGSQSPPWSSQGEGATFP
                     LEGKLKTEPSDTDFKNSAKRRALRRERRKMIEREILQKVTQAAQNPASGDQGQVAELG
                     PRPKATSEQSWEGRPVLSLKQLEGWDLDYILQSLPGQQGSQGDSASRSAWWLADRCQD
                     QGHSTGPSQDILLEQLALLCATQSRVRHPTWKVSADKLQDTEEQVARTRSASAESGFQ
                     TERVQKRAESRRLKTEPPTVFLDLRLTEPSDPQEHQSQESSEHSSSDSEEEEVGSAGS
                     IPVASSWEQRYCTGKSQLLQQLRAFRKGAVPPQLSAKDGPGGQKDQAQEDTGGSQTQR
                     KKHIKLWAEKQNALNLGDPLGTRLLPGMGQL"
     exon            199..345
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /inference="alignment:Splign:2.1.0"
     exon            346..804
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /inference="alignment:Splign:2.1.0"
     exon            805..922
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1064
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1065..1211
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1212..1295
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1296..1952
                     /gene="Dnaaf8"
                     /gene_synonym="Daap1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcccgggctc agggcaagtg gacgagcgga gcggacgagg gctccttgat gatgacacag
       61 acagagggca tcctttgagt cctggccccc atgacatcca aagacaaagc tgtggtatcc
      121 ttgccagttt ctccctggga tgccatcctt aaggctgcca aagaccagct gccatctctg
      181 gattcagact cctccctgtc tgactgtgag gaagaagaac ccttcatctt tcagcggaac
      241 cagcctgtcc tgattccaga cctaacggag gagctggctg aagaccctgt tggtgtcgat
      301 gagtctggga cctgggttac tgcagggagg agtccttcac ctgagccact tctggttcct
      361 gggagattag ccatagaacc cagaagtgaa tggatggtaa gatcaaagga cttggcccat
      421 caggaaagaa gaggcccagg ctggtcttgc cagagctgtg tcaagagcag cccaatcctt
      481 ttggatacta aggaggcacc cgcttggcct gaaggcagag gatcccagag tcctccctgg
      541 agttcccagg gagaaggagc cacctttcct ttggaaggaa agttgaagac agagccctca
      601 gatactgatt ttaaaaactc tgcaaagcga agagccctcc gcagggagag gaggaagatg
      661 atagagagag agatccttca gaaagtgacc caggctgctc agaacccagc ctctggtgac
      721 cagggccagg tggcagagtt aggaccccgt ccaaaagcaa cctcagagca gtcttgggaa
      781 ggaagaccag ttctctcact caagcaactt gaaggctggg acttggacta catcctccag
      841 agtctgccag ggcaacaagg cagccagggt gacagtgcat ccagaagtgc atggtggtta
      901 gcggatcgct gccaagacca agggcacagc actggaccct cccaggacat acttctggaa
      961 cagctggccc tcctgtgtgc cactcagtcc agagtccgac accctacctg gaaggtatct
     1021 gctgacaagc tccaagacac agaagagcag gtagccagaa ccagaagtgc ttcagcagag
     1081 tccggctttc aaactgagcg agtccagaag agggcagaga gtaggaggct gaagacagag
     1141 cctcccactg tcttccttga cctgcggctg acagaaccat cagatccaca agaacaccag
     1201 tcccaggaga gctctgaaca tagctcctct gacagtgagg aggaggaagt ggggtcagca
     1261 ggctccatac cagtggcatc ttcctgggaa caaaggtact gtactgggaa aagccagctt
     1321 cttcagcagc tgagggcgtt tcgaaagggg gctgttccac ctcagctgtc tgccaaggat
     1381 ggccctggag gccaaaagga tcaggcccaa gaagatactg ggggatcaca aactcagagg
     1441 aagaagcaca tcaaactctg ggctgagaag cagaatgccc taaatctagg ggaccctctt
     1501 gggacacggc tcctccctgg tatgggccag ctataggcaa ctcaggtaaa agacctgaga
     1561 agcaggttgg gtggcagact ttctacccac acagctctgg tggtctctac agtctgcctg
     1621 tttctaacag catgggcctc aggggctggg acccccagtc tagaccccat gcagccagtt
     1681 taagccagtt taagttaaca gttaaacttt tgttgttgcg gtgttgggaa ctgcatccag
     1741 ggcctcttcc gttcccatat ttaaacacat ttatagtttc ctatagaaaa tgtccccagg
     1801 ttcctggatt cctggtattt tatgtacaca cccatacaga tctgatggaa aaggaagcag
     1861 aacctgaaat ttgctttctc tctcttttta actgagacac aaaagcacac atagatttca
     1921 ggtcactcca aattaaaggt gacaccaatc ttaaaaaaaa aaaaaaaaaa aaaaaaaa
//
