LOCUS       NM_001014197            3358 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus dynein, axonemal, assembly factor 2 (Dnaaf2),
            mRNA.
ACCESSION   NM_001014197 XM_343071
VERSION     NM_001014197.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3358)
  AUTHORS   Omran,H., Kobayashi,D., Olbrich,H., Tsukahara,T., Loges,N.T.,
            Hagiwara,H., Zhang,Q., Leblond,G., O'Toole,E., Hara,C., Mizuno,H.,
            Kawano,H., Fliegauf,M., Yagi,T., Koshida,S., Miyawaki,A.,
            Zentgraf,H., Seithe,H., Reinhardt,R., Watanabe,Y., Kamiya,R.,
            Mitchell,D.R. and Takeda,H.
  TITLE     Ktu/PF13 is required for cytoplasmic pre-assembly of axonemal
            dyneins
  JOURNAL   Nature 456 (7222), 611-616 (2008)
   PUBMED   19052621
REFERENCE   2  (bases 1 to 3358)
  AUTHORS   Kunarso,G., Wong,K.Y., Stanton,L.W. and Lipovich,L.
  TITLE     Detailed characterization of the mouse embryonic stem cell
            transcriptome reveals novel genes and intergenic splicing
            associated with pluripotency
  JOURNAL   BMC Genomics 9, 155 (2008)
   PUBMED   18400104
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Apr 16, 2021 this sequence version replaced NM_001014197.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089901.1, SRR26643293.35480.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840111 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1874              JAXUCZ010000006.1  93404450-93406323   c
            1875-2018           JAXUCZ010000006.1  93401227-93401370   c
            2019-3358           JAXUCZ010000006.1  93397157-93398496   c
FEATURES             Location/Qualifiers
     source          1..3358
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..3358
                     /gene="Dnaaf2"
                     /gene_synonym="Ktu; RGD1310311"
                     /note="dynein, axonemal, assembly factor 2"
                     /db_xref="GeneID:362746"
                     /db_xref="RGD:1310311"
     exon            1..1874
                     /gene="Dnaaf2"
                     /gene_synonym="Ktu; RGD1310311"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..2522
                     /gene="Dnaaf2"
                     /gene_synonym="Ktu; RGD1310311"
                     /note="dynein assembly factor 2, axonemal"
                     /codon_start=1
                     /product="protein kintoun"
                     /protein_id="NP_001014219.3"
                     /db_xref="GeneID:362746"
                     /db_xref="RGD:1310311"
                     /translation="MAKTAASSALEDLDLSGEEVQRLTSAFQDPEFRRMFSDYAAEIT
                     DPENRRRYEEEITALERERGVEVRFVHPEPGHVLRTSLDGEHRCFVNVCSNSLVGAPS
                     SRPGPGRGGTAAGSHWSLPYSLAPGRQYAGRNGNRYTVYDVVFHPEALALARSHERFR
                     EMLDATALEAVEQQFGVRLDRRNAKTLKIKYKGTPEAAVLRTPLPEGVRAQPEGELPG
                     LLPYPPYPYHYPAAAESTARSPASPAPKAVQRPEPTEPRCSVVQRHHVDLQDYRCSRD
                     AAPSTVPHELVVTIELPLLRSAERAELEVKGKLLCLDSRNPDYRLRLSLPYPVDDGRG
                     RAQYNKARRQLVVTLPVALAVARQDFSTTPEGPTAETGTDNIACTSAGDLAGAREESA
                     DSSGADHGRKSCVVAPDAGTAKAEGELVPEPEQDFGGDSVTPLGPGEGTTPENRSLLY
                     SAFQSGDAESLAERSGVYGDLSVQTSEEQEGTCHDTSGSDMGGPGTESIKPLCPPLQC
                     NQDEDSLTLLIQVPGIQPQSLHGDLSPFSYELCFSTQDSGYSFTLQFAPENKLSTKEP
                     AISISLNNAVIVLAKSPESHGLWREWYWGLNKDSLEERLFIDEENVNEFLEEVVRSPL
                     KPARSLSPPLIEVLQVTEEQIQIHAKLQECSDPDGLQGKEKGVKEECPLSEKENTEHS
                     TTSTADSNSSVAVEGLKINTCGAVGLQQGCPDVPHVLSGKRLQSEAKMDPEFIRESST
                     AYSAEEKENIKEPVITKEKKIGGDHLSSLPNKTAVQNTHDFDTIKETNMQDGSVQIIK
                     DHTTHCAFDFQNSLLYDLD"
     exon            1875..2018
                     /gene="Dnaaf2"
                     /gene_synonym="Ktu; RGD1310311"
                     /inference="alignment:Splign:2.1.0"
     exon            2019..3358
                     /gene="Dnaaf2"
                     /gene_synonym="Ktu; RGD1310311"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcatccta gacactcggt tcacgttgat tcttcactgg gtctgggtga ggggccgcgt
       61 gggtcaccat ggccaagacg gcagcctctt cagcgctgga agacttggat ctgagcggag
      121 aggaggtgca acggcttacc tccgcttttc aggacccaga gttccgccga atgttctccg
      181 actacgccgc ggagatcacg gaccctgaga accggaggcg ctacgaggag gagatcacag
      241 cactggagag ggagcgtggg gtggaggtgc ggttcgtgca ccctgagccg ggccacgtgc
      301 tgcgtaccag cttagacggg gagcatcgct gcttcgtcaa cgtgtgcagc aactcactgg
      361 taggcgcgcc cagcagccgg ccaggccccg ggcgtggcgg cacggcggcc ggcagccact
      421 ggtccctgcc ctatagcctg gccccgggcc gccagtatgc gggccgcaac ggtaatcgct
      481 acaccgtcta cgacgtggtc ttccacccgg aagcgcttgc gctggccagg agccacgagc
      541 gcttccgcga aatgctggac gccacggccc tggaggcggt ggagcagcag ttcggcgtca
      601 ggctggaccg caggaacgcc aagaccctga agatcaagta caaggggacg ccggaggccg
      661 cagtgctccg cacgcccctt cccgagggcg tccgggctca gcccgagggg gagctgccag
      721 ggcttctccc gtacccacca tacccgtacc attaccccgc ggctgcggag agcaccgccc
      781 gctcgcccgc gtccccggct cccaaggctg tgcagcgccc ggagcccacc gaaccgcgct
      841 gctccgtggt gcagcgccac cacgtggacc tccaggatta ccgttgctcg cgcgacgcgg
      901 ccccaagcac cgtgccgcac gagttggtgg tcaccatcga gctgccgctg ctgcgctcgg
      961 ccgagcgggc ggagctggag gtgaagggga agctgctgtg cctagattcc agaaaccccg
     1021 actaccgact gcggctctcg ctgccgtacc cggtggacga cggccgcggc agggcacagt
     1081 acaataaggc gcggcggcag ctggtagtca cgctgccggt ggcgctggcg gtcgcgcgcc
     1141 aggacttctc gacgacaccg gaagggccta cggccgagac cggaactgac aatatagcct
     1201 gcacttccgc gggcgatctt gccggggctc gggaagagtc tgcagatagt tctggagctg
     1261 accacgggag aaagagctgt gtggtagccc cagatgccgg gactgcaaaa gctgaagggg
     1321 agctcgttcc cgagccggag caggacttcg gaggggactc agtgacacca ctaggccccg
     1381 gggaagggac aactcctgag aaccgaagcc tcctttattc tgctttccag agcggcgacg
     1441 ctgaatccct tgcggaaaga tcgggagtgt acggagacct cagtgtccag actagtgagg
     1501 aacaggaggg gacctgccac gacacctcgg gctcagacat gggtggcccg ggaacggaga
     1561 gcatcaaacc cttgtgccct cctttacagt gtaatcagga tgaagactcc ttgactttgc
     1621 tcatccaagt gcctgggatt cagccgcaaa gtcttcacgg ggatctgagt cccttcagtt
     1681 acgaactgtg cttctccaca caagactcag gttactcctt cactttgcag tttgctccgg
     1741 aaaataagtt gagtaccaaa gaacctgcga ttagcatttc tttaaacaat gctgtcatag
     1801 tactggcaaa atctccagag agccacggac tttggcgaga gtggtattgg ggcttgaaca
     1861 aggattcttt ggaggaaaga ttgtttattg atgaagaaaa tgttaatgag tttcttgaag
     1921 aggtcgttcg ctccccactg aagccagcga ggtctctgtc ccctccactg attgaggttc
     1981 ttcaggtcac tgaggagcag attcagatcc atgcgaagtt gcaagaatgt agtgatcctg
     2041 atggacttca aggaaaggaa aaaggagtca aagaagaatg tcctctaagt gaaaaagaaa
     2101 acactgaaca ttctaccacc tctacagctg actcgaattc atctgtagcg gttgaaggac
     2161 taaaaataaa cacttgtgga gctgtgggcc tccaacaggg ctgtcctgat gttcctcatg
     2221 tgctgtctgg aaaacgtctg caatcagagg caaaaatgga tcctgagttt ataagagaaa
     2281 gtagtactgc ctactcagct gaggagaagg aaaatataaa agagccagta ataactaagg
     2341 agaaaaaaat aggtggagat cacctatctt cattaccgaa caaaactgca gttcaaaaca
     2401 cacatgactt tgacactata aaagaaacca atatgcagga tggtagtgtg cagattatta
     2461 aagaccacac aactcattgt gcattcgatt ttcagaattc tttgctatat gatttggact
     2521 aatgtatata attttgaaat ttaaatgtaa aaatgtaaaa aaaaactggg acctaaaata
     2581 gcctctttgt gtttttaact ataaattgat gtataaacaa acatttacag ttgattctgt
     2641 ccggtgagaa agctagcaga ctacagcaga tacctgtaat cccagtgcct agcactggat
     2701 acctgatggt caggtgaggt caggctcagc tacataatga attaggggcc agcctaggct
     2761 atatgacacc atgtcttttt aaaaacaaaa aaccccctgg agataatttt cttgaacagt
     2821 ttccttaata agagaaaatc tttgtgattt ttctaataga aatatttttc tcaaagtttt
     2881 tttttttttt aaaacatttg gagttaacag acaatgtgtc tctgggatta aacccaggtc
     2941 atccgccttg gtgggaaggg tctttgccca ctgagccatc tctccggccc cttagtttgt
     3001 gagatataag ttggttctat attccctatg tagcctggcc taccctcaaa gttttcctgc
     3061 ctcagtttct gagtgctgag actatggcat gcatcagcat gctggacttt aaagatgctt
     3121 agttgttggc tcagcggtta agagcactga ctggtcttcc agaggtcctg agttcaattc
     3181 ccagcaacca catggtggct cacaaccatc tgtaatgaga tctgatgccc tcttctggtg
     3241 tgtctgaaga cagcgacagt gtactcatat acataaaatc tttaaaagat aattagttgt
     3301 actacaagta tatactgggt ttgtggtcaa tttttatatt aaagtttcaa gataaaaa
//
