LOCUS       NM_173145               3417 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus DLG associated protein 4 (Dlgap4), mRNA.
ACCESSION   NM_173145
VERSION     NM_173145.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Kindler,S., Rehbein,M., Classen,B., Richter,D. and Bockers,T.M.
  TITLE     Distinct spatiotemporal expression of SAPAP transcripts in the
            developing rat brain: a novel dendritically localized mRNA
  JOURNAL   Brain Res Mol Brain Res 126 (1), 14-21 (2004)
   PUBMED   15207911
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Welch,J.M., Wang,D. and Feng,G.
  TITLE     Differential mRNA expression and protein localization of the
            SAP90/PSD-95-associated proteins (SAPAPs) in the nervous system of
            the mouse
  JOURNAL   J Comp Neurol 472 (1), 24-39 (2004)
   PUBMED   15024750
REFERENCE   3  (bases 1 to 3417)
  AUTHORS   Kawabe,H., Hata,Y., Takeuchi,M., Ide,N., Mizoguchi,A. and Takai,Y.
  TITLE     nArgBP2, a novel neural member of ponsin/ArgBP2/vinexin family that
            interacts with synapse-associated protein 90/postsynaptic
            density-95-associated protein (SAPAP)
  JOURNAL   J Biol Chem 274 (43), 30914-30918 (1999)
   PUBMED   10521485
REFERENCE   4  (bases 1 to 3417)
  AUTHORS   Takeuchi,M., Hata,Y., Hirao,K., Toyoda,A., Irie,M. and Takai,Y.
  TITLE     SAPAPs. A family of PSD-95/SAP90-associated proteins localized at
            postsynaptic density
  JOURNAL   J Biol Chem 272 (18), 11943-11951 (1997)
   PUBMED   9115257
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            [WARNING] On Apr 26, 2024 this sequence was replaced by
            NM_173145.3.
            
            On Dec 7, 2020 this sequence version replaced NM_173145.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: U67140.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMEA5760383, SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-128               JAXUCZ010000003.1  165584360-165584487
            129-309             JAXUCZ010000003.1  165635503-165635683
            310-1378            JAXUCZ010000003.1  165673859-165674927
            1379-1623           JAXUCZ010000003.1  165677295-165677539
            1624-1738           JAXUCZ010000003.1  165678741-165678855
            1739-1789           JAXUCZ010000003.1  165679625-165679675
            1790-2030           JAXUCZ010000003.1  165683533-165683773
            2031-2392           JAXUCZ010000003.1  165718205-165718566
            2393-2481           JAXUCZ010000003.1  165720744-165720832
            2482-2894           JAXUCZ010000003.1  165721344-165721756
            2895-2986           JAXUCZ010000003.1  165728340-165728431
            2987-3142           JAXUCZ010000003.1  165729273-165729428
            3143-3417           JAXUCZ010000003.1  165730198-165730472
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..3417
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /note="DLG associated protein 4"
                     /db_xref="GeneID:286930"
                     /db_xref="RGD:708350"
     exon            1..128
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            129..309
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            310..1378
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     CDS             383..3361
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /note="PSD-95/SAP90-associated protein-4; SAPAP-4;
                     PSD-95/SAP90-binding protein 4; SAP90/PSD-95-associated
                     protein 4; discs, large homolog-associated protein 4"
                     /codon_start=1
                     /product="disks large-associated protein 4"
                     /protein_id="NP_775168.2"
                     /db_xref="GeneID:286930"
                     /db_xref="RGD:708350"
                     /translation="MKGLGDSRPRHLSDSLDPPHEPLFAGPDRNPYLLSPTEAFAREA
                     RFPGQNTLPGDGLFPLNNQLPPPSSTFPRIHYNSHFEVPEESPFPSHAQATKINRLPA
                     NLLDQFEKQLPIHRDGFSTLQFPRGEAKARGESPGRIRHLVHSVQRLFFTKAPSMEGT
                     TGKVGGNGGKKGVLEDGKGRRAKSKERAKAGEPKRRSRSNISGWWSSDDNLDGEGGAF
                     RSGPASGLMTLGRQPERTQPRYFMHAYNTISGHMLKTTKNTTTELTAPPPPPAPPATC
                     PSLGVGTDTNYVKRGSWSTLTLSHAHEVCQKTSATLDKSLLKSKSCHQGLAYHYLQVP
                     GGGGEWSTTLLSPRDMDSTAEGPIPCRRMRSGSYIKAMGDEDSDESGGGSPKPSPKTA
                     ARRQSYLRATQQSLGEQSNPRRSLDRLDSVDMPLPSKYPSWEEDYNPISDSLNDSGCI
                     SQVFGQASLIPQLFGHDQQVREADLSDQYEAACESACSEAESTAAEALDLSLPSYFRS
                     RSHSYLRAIQAGCSQEEDSVSLQSLSPPPSTGSLSNSRTLPSSSCLVAYKKTPPPVPP
                     RTTSKPFISVTVQSSTESAQDTYLDSQDHKSEVTSQSGLSNSSDSLDSSTRPPSVTRG
                     GITPGPEAPEPPPKHAALKSEHGTLTSSESHSEAVPKRKLSSIGIQVDCIQPVPKEEP
                     SPATKFQSIGVQVEDDWRSSAPSHSMSSRRDTDSDTQDANDSSCKSSERSLPDCTSHP
                     NSISIDAGPRQAPKIAQIKRNLSYGDNSDPALEASSLPPPDPWLETSSSSPAEPAQPG
                     ACRRDGYWFLKLLQAETERLEGWCCQMDKETKENNLSEEVLGKVLSAVGSAQLLMSQK
                     FQQFRGLCEQNLNPDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLVE
                     TPEKRKEEKKPPPPVPKKPAKSKAAVSRDKASDAGDKQRQEARKRLLAAKRAASVRQN
                     SATESADSIEIYVPEAQTRL"
     exon            1379..1623
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            1624..1738
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            1739..1789
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            1790..2030
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            2031..2392
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            2393..2481
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            2482..2894
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            2895..2986
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            2987..3142
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            3143..3417
                     /gene="Dlgap4"
                     /gene_synonym="DAP-4; Dap4; SAPAP4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcccgcgggc cggggccggg gccggggccg gggcctaggc gagcgacgct gagagcgagc
       61 aagcgagcga gcggaacggg cgcagcgcag aggccgagtg gacagaggcg gtcgagcgcc
      121 gggcacagac actggtgcca ccaccctctg cttggcccca ctgtgtgacc agggcccaac
      181 ccatacctct gacggcagcg tgctggaggg atgtgtgtcg cagtcctcag tcccacaccc
      241 gcttccgagg tgtcatctgc agcatacttg ccggctacca tttttcctgt gcacgcgtct
      301 ccctggttgg acagctgctg cctgggacag gtgacaccag tgcccaacta gggcaaaggc
      361 ccccgccccg tgggccagga tcatgaaagg cctcggtgac agccgccccc gccacctctc
      421 cgacagcctg gacccacctc atgagcccct ctttgccggg cctgaccgca acccctacct
      481 gctgtcgccc accgaggcct ttgcccggga agcccgtttc cctgggcaaa acacactgcc
      541 gggggatggg ctcttcccac tcaacaacca gctgccccca ccaagcagca cctttccccg
      601 gatccactac aactcccact ttgaggtgcc cgaggaaagt ccgttcccca gccatgccca
      661 agccaccaag atcaaccggc tgcctgccaa cctcctggac cagtttgaga aacaactgcc
      721 tatccaccgg gatggtttca gcaccctcca gttcccccgg ggcgaggcca aggcccgggg
      781 tgagagtcct ggccgcattc gccacctggt ccactccgtc cagcgtctct tcttcactaa
      841 ggcaccctcg atggagggca ccacgggcaa ggtgggtggc aacggcggca agaaaggtgt
      901 cctggaggac gggaaaggcc ggagggccaa aagcaaggaa cgggccaagg ctggggagcc
      961 caaacggcga agccgctcca acatctcggg ctggtggagt tccgatgaca acctggacgg
     1021 tgagggtggt gccttccgca gcggccctgc ctcggggctg atgactctgg gccgccagcc
     1081 agaacgtacc cagccccgct acttcatgca cgcctacaac accatcagcg gacacatgct
     1141 caaaaccacc aagaacacta ccaccgagct gactgcccca ccacccccgc ctgctccccc
     1201 tgctacctgt cccagccttg gagtgggcac tgacaccaac tatgtcaaac gtggttcctg
     1261 gtccactctg accctcagcc atgcccacga ggtctgccag aagacctcag ccactttgga
     1321 taagagcctg ctgaagtcca aatcctgtca ccagggtttg gcctaccatt acttgcaggt
     1381 gcccggcgga gggggagagt ggagcaccac gctgctgtcc cctcgagata tggatagcac
     1441 cgctgagggg ccgatcccgt gccggcgcat gcgcagtggc agctatatca aggccatggg
     1501 cgacgaagac agtgatgagt ctggaggtgg tagccccaag ccttctccca agactgcggc
     1561 acggcgtcag agctatctga gggccacgca gcagtccctg ggagagcaga gcaacccccg
     1621 caggagcttg gaccgcttgg attcagtgga catgccgctg ccgtccaagt accccagctg
     1681 ggaagaggac tacaacccca tcagtgacag cctcaatgac tccggctgta tcagccaggt
     1741 ttttggacag gcttccctga tccctcagtt gtttggccat gatcaacagg tccgggaggc
     1801 agacctgagt gaccagtatg aggcagcctg tgagtcggcc tgcagtgagg ctgagtcgac
     1861 agccgcagag gcgctcgact tgtcgctgcc cagctacttc cgctcacgca gccacagcta
     1921 cctgcgagcc atccaggcgg gctgctcgca ggaggaggac agtgtctccc tgcagtccct
     1981 ctccccaccg cccagcaccg gcagcctcag caacagccgt acacttccaa gttcatcatg
     2041 cctagtggca tataagaaga ccccaccacc ggtccctcca cgtaccacat cgaaaccgtt
     2101 catctcagtt accgttcaga gcagtactga gtctgctcag gacacctacc tggacagtca
     2161 agaccacaag agtgaagtga caagccagtc gggcttgagt aactcatcag acagcctgga
     2221 cagcagtacc cggccaccca gtgtgacacg gggtggaatt acgccaggcc ctgaggctcc
     2281 agagccaccc cctaagcatg cagctctgaa gagtgaacac gggacactga cgagctctga
     2341 gtcccactcc gaggccgtcc ccaaaaggaa actgtcatca ataggaatac aagttgactg
     2401 cattcagcca gtgccaaaag aggagcccag tcccgctacc aaattccagt ccatcggggt
     2461 tcaggtagag gacgactggc gaagcagcgc cccctctcac agcatgtcct cccgtcggga
     2521 cactgactcc gatacccagg acgccaatga ctccagttgt aagtcatctg agaggagtct
     2581 cccagactgt acctcacacc ccaattccat cagcattgat gctggccccc gacaggcccc
     2641 caagattgcc cagatcaagc gcaacctctc ctatggagac aacagcgacc ctgccctgga
     2701 ggcatcttcg ctgcccccac ccgacccttg gctggagact tcctccagct ccccagcaga
     2761 gccagctcag ccaggggcct gccgcaggga tggctactgg ttcctgaagc tccttcaggc
     2821 tgaaacggag aggctggaag gctggtgctg tcagatggac aaggagacca aagagaacaa
     2881 cctctctgaa gaagtcttag gaaaagttct cagtgctgtg ggcagcgccc agctcctgat
     2941 gtcccagaaa ttccaacagt tccgtggcct ctgtgagcag aacttgaacc ctgatgccaa
     3001 cccccgtccg acagcccagg acctggcagg gttctgggac ctgctgcagc tgtccattga
     3061 ggacatcagc atgaagttcg atgagctcta ccacctcaag gccaacagct ggcagctggt
     3121 ggagaccccc gagaagagga aggaagagaa gaaaccaccc cctccagtcc cgaagaagcc
     3181 agccaaatcc aaggcggcag tgagccgcga caaggcctca gatgcggggg acaagcagcg
     3241 gcaggaggcc agaaagagac tcctggccgc caagcgggca gcatctgtgc ggcagaactc
     3301 ggccacagag agtgcagaca gcatcgagat ttatgtccct gaggcccaga ccaggctcta
     3361 aggccacaaa ggagaaagca ctcattttaa atcattaaaa actcaatgca aacggaa
//
