LOCUS       XM_039089424            7451 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus discs large MAGUK scaffold protein 2
            (Dlg2), transcript variant X23, mRNA.
ACCESSION   XM_039089424
VERSION     XM_039089424.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089424.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7451
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7451
                     /gene="Dlg2"
                     /gene_synonym="Dlgh2"
                     /note="discs large MAGUK scaffold protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 38 ESTs, 12 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:64053"
                     /db_xref="RGD:619895"
     CDS             177..2810
                     /gene="Dlg2"
                     /gene_synonym="Dlgh2"
                     /codon_start=1
                     /product="disks large homolog 2 isoform X23"
                     /protein_id="XP_038945352.1"
                     /db_xref="GeneID:64053"
                     /db_xref="RGD:619895"
                     /translation="MPVHHCSKYRYQDEDGPHDHSLPRLTHEVRGPELVHVSEKNLSQ
                     IENVHGYVLQSHISPLKASPAPIIVNTDTLDTIPYVNGTEIEYEFEEITLERGNSGLG
                     FSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAV
                     EALKEAGSIVRLYVRRRRPILETVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVT
                     KIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSDVVYLKVGKPTTIY
                     MTDPYGPPDITHSYSPPMENHLLSGNNGTLEYKTSLPPISPGRYSPIPKHMLVEDDYT
                     RPPEPVYSTVNKLCDKPASPRHYSPVECDKSFLLSTPYPHYHLGLLPDSDMTSHSQHS
                     TATRQPSVTLQRAISLEGEPRKVVLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADL
                     SGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQYQPEDYARFEAKIHDL
                     REQMMNHSMSSGSGSLRTNQKRSLYVRAMFDYDKSKDSGLPSQGLSFKYGDILHVINA
                     SDDEWWQARRVILDGDSEEMGVIPSKRRVERKERARLKTVKFNAKPGVIDSKGSFNDK
                     RKKSFIFSRKFPFYKNKEQSEQETSDPEQHVSSNASDSESSCRGQEDLILSYEPVTRQ
                     EINYTRPVIILGPMKDRINDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVISRE
                     QMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKHCILDVSGNAIKRLQVAQLYP
                     IAIFIKPKSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFGEYFTAIVQGDTLEDIYNQ
                     CKLVIEEQSGPFIWIPSKEKL"
ORIGIN      
        1 acacaactgc agtaacgagt ttgcagctta cgggttgcag tggaccaaag gaaaatgctt
       61 cgtacattga gcaaaataaa gaaaaccagt tttttgagaa tgaaactgaa gaaaagacgt
      121 gtcaaaacca aggcaaatgc ccagcccaga actgttcagt ggaagcccct gcctggatgc
      181 ctgtccacca ctgttctaag tatcgatacc aagatgagga cggtccacat gatcattcct
      241 tacctcggct aactcatgaa gtaagaggtc cagaactggt gcatgtgtcg gaaaagaacc
      301 tctctcaaat agaaaatgtc cacggatatg tcttacagtc tcacatttct cctctgaagg
      361 ctagccctgc tcctataatt gtcaacacag acactttgga cactattcct tatgtcaatg
      421 gaacagaaat tgaatatgaa tttgaagaaa ttacattgga gaggggaaat tcaggtctgg
      481 gattcagtat tgctggaggg acagataatc ctcacattgg agatgaccct ggcatattta
      541 ttacgaagat tattccagga ggtgctgcag cagaggatgg cagactcagg gtcaacgatt
      601 gtatcttgcg ggtgaatgaa gttgatgtgt cggaggtttc ccacagtaaa gcagtggagg
      661 ccctcaagga agcaggctct attgttcgac tgtatgtacg tagaagacga cccatcctgg
      721 agactgttgt ggaaatcaaa cttttcaaag ggccaaaagg tttaggcttc agtattgctg
      781 gaggggtggg gaaccaacac attcccggag acaacagcat ttatgtaacg aaaattatag
      841 atggtggagc tgcacagaaa gatggaaggt tgcaagtagg agacagactg ctaatggtaa
      901 ataactatag tttagaagaa gttacacatg aagaggctgt agcgatattg aaaaatacat
      961 ctgatgttgt ttatctaaaa gttggcaaac ccacaaccat ttatatgact gatccttatg
     1021 ggccaccgga tattactcac tcttattctc caccaatgga aaatcatcta ctgtctggta
     1081 acaatggcac gttagaatac aaaacatccc tgccgcccat ctctccagga aggtactcac
     1141 caattccaaa gcacatgctg gttgaagatg actacacaag gcctccggaa cctgtttaca
     1201 gcactgtgaa taaactgtgt gataaacctg cttctcccag gcactattcc cctgttgagt
     1261 gtgacaaaag cttccttctc tcaactcctt acccccacta ccacctaggc ctgctccctg
     1321 actctgacat gaccagtcat tctcagcaca gtactgcaac tcgtcagccc tcagtgactc
     1381 tccaacgggc catctccctg gaaggggagc cccgaaaggt ggtccttcac aaaggctcca
     1441 ctggcctggg cttcaacatt gtgggtggag aagacggaga aggtattttt gtatccttca
     1501 ttctggccgg tggaccagca gacctgagtg gggagctcca gagaggagac cagatcttat
     1561 cggtgaatgg tatcgatctc cgaggagcat ctcatgaaca ggcagctgca gcactgaagg
     1621 gggcggggca gacagtgaca atcatagcac aatatcaacc tgaagattac gctcgattcg
     1681 aggccaaaat ccatgaccta cgagagcaga tgatgaacca cagcatgagt tccgggtccg
     1741 ggtcccttcg aaccaatcag aaacgctccc tgtatgtcag agccatgttt gactatgaca
     1801 agagcaagga cagtggactg cctagccaag gacttagttt taaatatgga gacatccttc
     1861 atgtcatcaa tgcctctgat gatgagtggt ggcaagccag aagggtcata ctagatgggg
     1921 acagcgagga gatgggagtc attcccagca aacggagggt ggaaagaaag gagcgtgccc
     1981 gattgaagac agtgaagttc aatgcaaaac ctggtgtgat tgattccaaa gggtcattca
     2041 atgacaagcg taaaaagagc ttcatctttt cacgaaaatt cccattctac aagaacaagg
     2101 agcagagtga gcaggaaacc agtgatcctg aacaacacgt ctcttctaat gccagcgata
     2161 gcgaaagtag ctgccgagga caagaagatc tcattctttc ctatgaacct gtcacgaggc
     2221 aggaaataaa ctacacccga ccagtgatta tcctgggccc catgaaggat cgaatcaatg
     2281 atgacttgat atctgaattt cctgataaat ttggctcctg tgtgcctcat actacgaggc
     2341 caaagcgtga ctacgaagtc gacggcagag actatcactt tgtcatttct agagaacaaa
     2401 tggagaaaga tatccaagag cacaaattta tagaagccgg ccagtacaat gacaatttat
     2461 atggaaccag tgtgcagtct gtgagatttg tagcagaaag gggcaaacac tgtatacttg
     2521 atgtatcggg aaatgctatt aagcggttac aagttgccca gctctatccc attgctatct
     2581 tcataaagcc caagtctctg gaacctctga tggagatgaa taagcgtcta acggaggaac
     2641 aagccaagaa aacctatgac cgggcaatta agctagaaca agaatttgga gaatatttta
     2701 cagctattgt ccaaggagat accttagaag atatttacaa ccaatgcaag cttgttattg
     2761 aagagcagtc tggacctttc atctggattc cctcaaagga gaagttataa attagctact
     2821 gcacctctga caacgacaga agagcattta gaagaacaaa atatatataa tataacactt
     2881 ggaggctttt atgtttttgt tgcatttatg tttttgcagt caatgtgaat ccttatgaat
     2941 gtacaacaca aactgtgtga agccatgaag gaaacagagg ggccgaaggg tgggacggaa
     3001 gagacatagc agtatgcagg aaggcttggg tttgctcaaa gtgccaggtg tagggatgaa
     3061 cctctgatgg gctctctgcc ctagagacgg gcagccttct caccccagca gatgtccaga
     3121 gctgatttag ctgctgagct ctctgtgttt gctttaagaa aagttgccag cactcgaacc
     3181 tcaccaatct accctttacc aacctctgta attggtacac tttgaatttt ataactatgc
     3241 acatcctttg atttcttaac aagcaaagga aatagggaaa acagaaagga gtccctttgg
     3301 agatgacata ccatcagggg aggatgatta cttagtttcc ttggctggca tgtgcaaaga
     3361 ccagcgtgcc gtgtgtggag gactaacgtt actgaagggg gttccacctg gcctagcttt
     3421 aggactatca attgtctatt ttgccattta taagctgaaa gaaggcacta aagatgagaa
     3481 taatttatac aataaatata ttaaatgtat agaaatgaat ttctataggt taaaaagttt
     3541 tgtgaaatat tttgtaaaga ctaacagaaa cattgaaaga ctgaatgtcc gcactctcag
     3601 caggtgatca aatttaagac tttgaggctg cactctccct tttgtcgcca atgatccatt
     3661 cagagcatct gagttccctc caggtctgac aaagacttcc ccttcacccc tctccccacg
     3721 gccatgcaca ctagcacact agcgatacac tcttatggaa cttgctcctt agtaagttgc
     3781 cctcatgaat atttttggac gagatttttg ttacaattct ttaagcccat ggcttttcag
     3841 agacaaactc atgcaaataa tcgaaaggga aagattgctt tcctctagtt aagtagcctg
     3901 agccaaccac gcagatagtc aaataacttt gttcctagct acttgtatac agttcaagaa
     3961 ctattcagta ttctggcaaa ccataagtca ttagaattat cttttctttg tttcacagag
     4021 caattgaagt gttttgtaac agtccaagtt ggcattacag gggaagatct gtcctgagat
     4081 gcactatttc tctaaggaag agaaaaaaga gaagttatct agttgggagt gatgagggac
     4141 gcactttgtt tcagtatata gggcaaagag aaccacaaga aaaggacaat ttatggcttt
     4201 gagctcaacc aattgaattg ccttccttag ggctgcacct ggaccaagtt tatttttcta
     4261 acaattatac taataatgat tttaaaagag aaacctccca gagcctataa gctgaaacac
     4321 aagagttagc ttcccacttt agcgctgatg ctgtcgtcag ccctggttct gcccaaggtg
     4381 ttttgagaga gactttttag tgttattaat aaccactcat gtctgggttc tatgcatgcc
     4441 cggattaagc cccatcgcct tatttctggg gtacatcaag acctggcagg gatcctgcca
     4501 cactgtgcag tcaaccagca cataggctgg agtacaagaa caaaagacag agccatcaga
     4561 gtgatggggc ttcttctaag ttagaacatc agagcttaaa actgagagtc tctttccaaa
     4621 atcaagggtc attcatcttt tacgaaatac catcgtctgc ccagttgcag tcaccaaaac
     4681 aaacatttaa ttgcaaaaag taagcatcta cctagagtct tgaggctgcc tttgccaaac
     4741 gaagaggtac caagcagcca cgtgtatctt tttccctcag ttttctagag atagccttag
     4801 agggctcaaa aacgctaaaa gatgtgtcca cgtctgcaac tcaccagttt caggtcacgg
     4861 ccaacttcca tcaatatagc tctcagaagt tttctgccac tagaatgcca ttcctgatcc
     4921 cagctctctt tataggccac catgataact tctttggttt ctccactgag catgcaacca
     4981 tttaccttag aggactgtca ttaatgagta gatgttttct ctagttgtgt gacgtgcttt
     5041 ccatttgata gtattgctgt ggctgagtac aatcaaattg aaccacaaac cactggtttt
     5101 gtagtaatac aattatttat tttcccagta tagatgcttc cggattagca ttagcactga
     5161 ttttttatgt agatttatat aaatataaat acatatatat ttgcttgatg aatcaccaag
     5221 caccttggtg agagggtctt ttcctataga attcactcat ccattttgtt gtgtcgtcct
     5281 gctcttccca atgttgaggt ctctatggct ccaaagaact ggtgtatttt gcagcaaatc
     5341 caatgacata tagggaaatg gcatgaaagt cacccagatc acatctggtg caaatgcacc
     5401 tggagccttg ggccagattg gtgctaacac tgcaaacttt gtccggagct ctctccaatc
     5461 tgaaggctcg ctgggggcac agtgtcacct tcacatgctg ggccctttcg gaaaagtgcc
     5521 agatcgtgtc actggtgcta tttttcatgc tctggtacaa tgtgtagcac catgggggtc
     5581 tcagctttac caaaaccgaa atcccacctg tcagccaatt attgctgagg catttgcata
     5641 ttgctctttt ccatgagata ggatggccta ttctttgaag gccctttctc ccagacccaa
     5701 attcaggggt tggctctatc cactttgcaa acccatctag atgaagctac actcgggtgc
     5761 ctctgtgagc tgtcttagac cctactgcca gcccttcagg acagagtcaa cggatgctct
     5821 gtacacctct ggttctcatc tctttctcct cctcagtttt cctcctcatc tcctctcatc
     5881 atctgccatt ttgaccttct ctttttatcc ttcctgggtt gttgaacttg cccctccctc
     5941 tctttcctct gtctgtcttt ttctgtccct ctctcctttc tccatctcct gttcccctta
     6001 ctcctcctcc tcccagacat gccctccctc cctcctctct catctcacac agttctggtc
     6061 atcagtacat ccggctcctt agttttcctg tcctataaag ggcacacggc tgattcagac
     6121 agcaagtcca cacagtggac taatgacata aatacttggg gtcaccattt atttactcag
     6181 cccagaaaac aaagctgagt gtgaggccct cacctggagc cagtctgcac cactgcccca
     6241 gcagtgctga tgcaggagct gtgggccccg gcacctaact cactcccagc accgcccagg
     6301 ctgaggatgc ttcctttcca cagaggcaaa ctctggcccc aacaactatt ctaatgaacc
     6361 tcattgaagc catgacaccg ccctggtttg gagagagatt tttccctcta tattcttttt
     6421 cccgtttcca tgtgaagccc ctctgctttt cagctggcga ttgctctggt gagactgaat
     6481 ggacttgcta gcgaaatgac atcttttttt tttttcctgt cttggtcctg cctaaaattc
     6541 ctacaaaaga aaaaaaaagc atttaagtca aggactaagg ctaaatttat tatactaatg
     6601 agtcactcct ggggagacat cagttccctt aaagcatgtg gagtacctcc tgtgacaact
     6661 gattttccag gaaactccat agagaattct gtggatatgc attaattatt taagggtatg
     6721 gtatacgtgg tatgcatacc acgtatacac attacctgag gtaagattca atgtggttgg
     6781 aaacacatac acacttcagt ctgtaaatat tcttcctcac tgaaacctgt gcttcagaaa
     6841 ccatttctcg tacagctgtg cagtttattg tagcagctgg agacaagcta aggcaggcag
     6901 tgaatttaga ctaagatcag ctgaaagagt agtttctccc ttgcagctca caaggacaga
     6961 cagctaagtg gcgaggttga ctcccaatgg gatggcgaac ttttcttctt ttcaaatttg
     7021 tgtttcctaa gtgtatctta acttctgagt gcaccaggtt gtacccatta gatcctttta
     7081 ctatgacaat tttgtgcttc tctctgacag gatgcttctc catcaagctg taatgcagga
     7141 tgggagggga gggaaggagg gagggggaat tactccttgc ctggctggag tttacagaga
     7201 cactgcacag cttacactcc tgttaagtgt aaatattcaa cacttccatt ccatttgtgt
     7261 aaaaaataaa gcacacacga ttataaaatc aagatgtata tttcatactc cgtgtgtcca
     7321 tgaatatttt ttgcgtttcc agatgttggt tgaggccgca ttgtaaaaat gcctgataga
     7381 gtgtttatta taaacatgcc gtggttttct tatataaata ttaaaacaat ttctacttta
     7441 tagcaaaatt a
//
