LOCUS       XM_039089369            7901 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus discs large MAGUK scaffold protein 2
            (Dlg2), transcript variant X11, mRNA.
ACCESSION   XM_039089369
VERSION     XM_039089369.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089369.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7901
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7901
                     /gene="Dlg2"
                     /gene_synonym="Dlgh2"
                     /note="discs large MAGUK scaffold protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 38 ESTs, 12 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     15 samples with support for all annotated introns"
                     /db_xref="GeneID:64053"
                     /db_xref="RGD:619895"
     CDS             546..3260
                     /gene="Dlg2"
                     /gene_synonym="Dlgh2"
                     /codon_start=1
                     /product="disks large homolog 2 isoform X11"
                     /protein_id="XP_038945297.1"
                     /db_xref="GeneID:64053"
                     /db_xref="RGD:619895"
                     /translation="MDCLCIVTTKQNQGKCPAQNCSVEAPAWMPVHHCSYRYQDEDGP
                     HDHSLPRLTHEVRGPELVHVSEKNLSQIENVHGYVLQSHISPLKASPAPIIVNTDTLD
                     TIPYVNGTEIEYEFEEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAE
                     DGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVRRRRPILETVVEIKLFK
                     GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEV
                     THEEAVAILKNTSDVVYLKVGKPTTIYMTDPYGPPDITHSYSPPMENHLLSGNNGTLE
                     YKTSLPPISPGRYSPIPKHMLVEDDYTRPPEPVYSTVNKLCDKPASPRHYSPVECDKS
                     FLLSTPYPHYHLGLLPDSDMTSHSQHSTATRQPSVTLQRAISLEGEPRKVVLHKGSTG
                     LGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALK
                     GAGQTVTIIAQYQPEDYARFEAKIHDLREQMMNHSMSSGSGSLRTNQKRSLYVRAMFD
                     YDKSKDSGLPSQGLSFKYGDILHVINASDDEWWQARRVILDGDSEEMGVIPSKRRVER
                     KERARLKTVKFNAKPGVIDSKGSFNDKRKKSFIFSRKFPFYKNKEQSEQETSDPEQHV
                     SSNASDSESSCRGQEDLILSYEPVTRQEINYTRPVIILGPMKDRINDDLISEFPDKFG
                     SCVPHTTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRF
                     VAERGKHCILDVSGNAIKRLQVAQLYPIAIFIKPKSLEPLMEMNKRLTEEQAKKTYDR
                     AIKLEQEFGEYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL"
ORIGIN      
        1 ggcagccgaa cgacagtcct ttgatagatg ggccgggtag tttttttgtg ttgtgcttac
       61 tcagagttgt tagcagcaaa gagaaggaag caaaaggggg gtactttggc aaaggaaatc
      121 taatgagtag agcggagcag cagatcagaa ttcagaaaca agagcgagag ctgaagtgtg
      181 attctcgggc gcttggtcta acactcatct ccaggataga gcagtgccgg gcactcgcgt
      241 cagccctgct gcccttctcg gaatctgcta agagatgatg cagccttggg agcccagcaa
      301 gccaccagga agttttgccg gatctgattc ctaggggatt ttctcgtgcc taggagaatc
      361 ctgcttgtat tgagctgtat ggaggagggc tcgagtttcc catgaggggc cccccttgga
      421 aaagccttct gtgcagaatc caggctctgc ttctctcagt gtgctattta cccaaaggct
      481 tttcctcacc ttggctgatt tgctggtgtg atttccatgc actgagtcct gtgtagggat
      541 ccaggatgga ttgcctgtgc attgtcacca caaagcaaaa ccaaggcaaa tgcccagccc
      601 agaactgttc agtggaagcc cctgcctgga tgcctgtcca ccactgttct tatcgatacc
      661 aagatgagga cggtccacat gatcattcct tacctcggct aactcatgaa gtaagaggtc
      721 cagaactggt gcatgtgtcg gaaaagaacc tctctcaaat agaaaatgtc cacggatatg
      781 tcttacagtc tcacatttct cctctgaagg ctagccctgc tcctataatt gtcaacacag
      841 acactttgga cactattcct tatgtcaatg gaacagaaat tgaatatgaa tttgaagaaa
      901 ttacattgga gaggggaaat tcaggtctgg gattcagtat tgctggaggg acagataatc
      961 ctcacattgg agatgaccct ggcatattta ttacgaagat tattccagga ggtgctgcag
     1021 cagaggatgg cagactcagg gtcaacgatt gtatcttgcg ggtgaatgaa gttgatgtgt
     1081 cggaggtttc ccacagtaaa gcagtggagg ccctcaagga agcaggctct attgttcgac
     1141 tgtatgtacg tagaagacga cccatcctgg agactgttgt ggaaatcaaa cttttcaaag
     1201 ggccaaaagg tttaggcttc agtattgctg gaggggtggg gaaccaacac attcccggag
     1261 acaacagcat ttatgtaacg aaaattatag atggtggagc tgcacagaaa gatggaaggt
     1321 tgcaagtagg agacagactg ctaatggtaa ataactatag tttagaagaa gttacacatg
     1381 aagaggctgt agcgatattg aaaaatacat ctgatgttgt ttatctaaaa gttggcaaac
     1441 ccacaaccat ttatatgact gatccttatg ggccaccgga tattactcac tcttattctc
     1501 caccaatgga aaatcatcta ctgtctggta acaatggcac gttagaatac aaaacatccc
     1561 tgccgcccat ctctccagga aggtactcac caattccaaa gcacatgctg gttgaagatg
     1621 actacacaag gcctccggaa cctgtttaca gcactgtgaa taaactgtgt gataaacctg
     1681 cttctcccag gcactattcc cctgttgagt gtgacaaaag cttccttctc tcaactcctt
     1741 acccccacta ccacctaggc ctgctccctg actctgacat gaccagtcat tctcagcaca
     1801 gtactgcaac tcgtcagccc tcagtgactc tccaacgggc catctccctg gaaggggagc
     1861 cccgaaaggt ggtccttcac aaaggctcca ctggcctggg cttcaacatt gtgggtggag
     1921 aagacggaga aggtattttt gtatccttca ttctggccgg tggaccagca gacctgagtg
     1981 gggagctcca gagaggagac cagatcttat cggtgaatgg tatcgatctc cgaggagcat
     2041 ctcatgaaca ggcagctgca gcactgaagg gggcggggca gacagtgaca atcatagcac
     2101 aatatcaacc tgaagattac gctcgattcg aggccaaaat ccatgaccta cgagagcaga
     2161 tgatgaacca cagcatgagt tccgggtccg ggtcccttcg aaccaatcag aaacgctccc
     2221 tgtatgtcag agccatgttt gactatgaca agagcaagga cagtggactg cctagccaag
     2281 gacttagttt taaatatgga gacatccttc atgtcatcaa tgcctctgat gatgagtggt
     2341 ggcaagccag aagggtcata ctagatgggg acagcgagga gatgggagtc attcccagca
     2401 aacggagggt ggaaagaaag gagcgtgccc gattgaagac agtgaagttc aatgcaaaac
     2461 ctggtgtgat tgattccaaa gggtcattca atgacaagcg taaaaagagc ttcatctttt
     2521 cacgaaaatt cccattctac aagaacaagg agcagagtga gcaggaaacc agtgatcctg
     2581 aacaacacgt ctcttctaat gccagcgata gcgaaagtag ctgccgagga caagaagatc
     2641 tcattctttc ctatgaacct gtcacgaggc aggaaataaa ctacacccga ccagtgatta
     2701 tcctgggccc catgaaggat cgaatcaatg atgacttgat atctgaattt cctgataaat
     2761 ttggctcctg tgtgcctcat actacgaggc caaagcgtga ctacgaagtc gacggcagag
     2821 actatcactt tgtcatttct agagaacaaa tggagaaaga tatccaagag cacaaattta
     2881 tagaagccgg ccagtacaat gacaatttat atggaaccag tgtgcagtct gtgagatttg
     2941 tagcagaaag gggcaaacac tgtatacttg atgtatcggg aaatgctatt aagcggttac
     3001 aagttgccca gctctatccc attgctatct tcataaagcc caagtctctg gaacctctga
     3061 tggagatgaa taagcgtcta acggaggaac aagccaagaa aacctatgac cgggcaatta
     3121 agctagaaca agaatttgga gaatatttta cagctattgt ccaaggagat accttagaag
     3181 atatttacaa ccaatgcaag cttgttattg aagagcagtc tggacctttc atctggattc
     3241 cctcaaagga gaagttataa attagctact gcacctctga caacgacaga agagcattta
     3301 gaagaacaaa atatatataa tataacactt ggaggctttt atgtttttgt tgcatttatg
     3361 tttttgcagt caatgtgaat ccttatgaat gtacaacaca aactgtgtga agccatgaag
     3421 gaaacagagg ggccgaaggg tgggacggaa gagacatagc agtatgcagg aaggcttggg
     3481 tttgctcaaa gtgccaggtg tagggatgaa cctctgatgg gctctctgcc ctagagacgg
     3541 gcagccttct caccccagca gatgtccaga gctgatttag ctgctgagct ctctgtgttt
     3601 gctttaagaa aagttgccag cactcgaacc tcaccaatct accctttacc aacctctgta
     3661 attggtacac tttgaatttt ataactatgc acatcctttg atttcttaac aagcaaagga
     3721 aatagggaaa acagaaagga gtccctttgg agatgacata ccatcagggg aggatgatta
     3781 cttagtttcc ttggctggca tgtgcaaaga ccagcgtgcc gtgtgtggag gactaacgtt
     3841 actgaagggg gttccacctg gcctagcttt aggactatca attgtctatt ttgccattta
     3901 taagctgaaa gaaggcacta aagatgagaa taatttatac aataaatata ttaaatgtat
     3961 agaaatgaat ttctataggt taaaaagttt tgtgaaatat tttgtaaaga ctaacagaaa
     4021 cattgaaaga ctgaatgtcc gcactctcag caggtgatca aatttaagac tttgaggctg
     4081 cactctccct tttgtcgcca atgatccatt cagagcatct gagttccctc caggtctgac
     4141 aaagacttcc ccttcacccc tctccccacg gccatgcaca ctagcacact agcgatacac
     4201 tcttatggaa cttgctcctt agtaagttgc cctcatgaat atttttggac gagatttttg
     4261 ttacaattct ttaagcccat ggcttttcag agacaaactc atgcaaataa tcgaaaggga
     4321 aagattgctt tcctctagtt aagtagcctg agccaaccac gcagatagtc aaataacttt
     4381 gttcctagct acttgtatac agttcaagaa ctattcagta ttctggcaaa ccataagtca
     4441 ttagaattat cttttctttg tttcacagag caattgaagt gttttgtaac agtccaagtt
     4501 ggcattacag gggaagatct gtcctgagat gcactatttc tctaaggaag agaaaaaaga
     4561 gaagttatct agttgggagt gatgagggac gcactttgtt tcagtatata gggcaaagag
     4621 aaccacaaga aaaggacaat ttatggcttt gagctcaacc aattgaattg ccttccttag
     4681 ggctgcacct ggaccaagtt tatttttcta acaattatac taataatgat tttaaaagag
     4741 aaacctccca gagcctataa gctgaaacac aagagttagc ttcccacttt agcgctgatg
     4801 ctgtcgtcag ccctggttct gcccaaggtg ttttgagaga gactttttag tgttattaat
     4861 aaccactcat gtctgggttc tatgcatgcc cggattaagc cccatcgcct tatttctggg
     4921 gtacatcaag acctggcagg gatcctgcca cactgtgcag tcaaccagca cataggctgg
     4981 agtacaagaa caaaagacag agccatcaga gtgatggggc ttcttctaag ttagaacatc
     5041 agagcttaaa actgagagtc tctttccaaa atcaagggtc attcatcttt tacgaaatac
     5101 catcgtctgc ccagttgcag tcaccaaaac aaacatttaa ttgcaaaaag taagcatcta
     5161 cctagagtct tgaggctgcc tttgccaaac gaagaggtac caagcagcca cgtgtatctt
     5221 tttccctcag ttttctagag atagccttag agggctcaaa aacgctaaaa gatgtgtcca
     5281 cgtctgcaac tcaccagttt caggtcacgg ccaacttcca tcaatatagc tctcagaagt
     5341 tttctgccac tagaatgcca ttcctgatcc cagctctctt tataggccac catgataact
     5401 tctttggttt ctccactgag catgcaacca tttaccttag aggactgtca ttaatgagta
     5461 gatgttttct ctagttgtgt gacgtgcttt ccatttgata gtattgctgt ggctgagtac
     5521 aatcaaattg aaccacaaac cactggtttt gtagtaatac aattatttat tttcccagta
     5581 tagatgcttc cggattagca ttagcactga ttttttatgt agatttatat aaatataaat
     5641 acatatatat ttgcttgatg aatcaccaag caccttggtg agagggtctt ttcctataga
     5701 attcactcat ccattttgtt gtgtcgtcct gctcttccca atgttgaggt ctctatggct
     5761 ccaaagaact ggtgtatttt gcagcaaatc caatgacata tagggaaatg gcatgaaagt
     5821 cacccagatc acatctggtg caaatgcacc tggagccttg ggccagattg gtgctaacac
     5881 tgcaaacttt gtccggagct ctctccaatc tgaaggctcg ctgggggcac agtgtcacct
     5941 tcacatgctg ggccctttcg gaaaagtgcc agatcgtgtc actggtgcta tttttcatgc
     6001 tctggtacaa tgtgtagcac catgggggtc tcagctttac caaaaccgaa atcccacctg
     6061 tcagccaatt attgctgagg catttgcata ttgctctttt ccatgagata ggatggccta
     6121 ttctttgaag gccctttctc ccagacccaa attcaggggt tggctctatc cactttgcaa
     6181 acccatctag atgaagctac actcgggtgc ctctgtgagc tgtcttagac cctactgcca
     6241 gcccttcagg acagagtcaa cggatgctct gtacacctct ggttctcatc tctttctcct
     6301 cctcagtttt cctcctcatc tcctctcatc atctgccatt ttgaccttct ctttttatcc
     6361 ttcctgggtt gttgaacttg cccctccctc tctttcctct gtctgtcttt ttctgtccct
     6421 ctctcctttc tccatctcct gttcccctta ctcctcctcc tcccagacat gccctccctc
     6481 cctcctctct catctcacac agttctggtc atcagtacat ccggctcctt agttttcctg
     6541 tcctataaag ggcacacggc tgattcagac agcaagtcca cacagtggac taatgacata
     6601 aatacttggg gtcaccattt atttactcag cccagaaaac aaagctgagt gtgaggccct
     6661 cacctggagc cagtctgcac cactgcccca gcagtgctga tgcaggagct gtgggccccg
     6721 gcacctaact cactcccagc accgcccagg ctgaggatgc ttcctttcca cagaggcaaa
     6781 ctctggcccc aacaactatt ctaatgaacc tcattgaagc catgacaccg ccctggtttg
     6841 gagagagatt tttccctcta tattcttttt cccgtttcca tgtgaagccc ctctgctttt
     6901 cagctggcga ttgctctggt gagactgaat ggacttgcta gcgaaatgac atcttttttt
     6961 tttttcctgt cttggtcctg cctaaaattc ctacaaaaga aaaaaaaagc atttaagtca
     7021 aggactaagg ctaaatttat tatactaatg agtcactcct ggggagacat cagttccctt
     7081 aaagcatgtg gagtacctcc tgtgacaact gattttccag gaaactccat agagaattct
     7141 gtggatatgc attaattatt taagggtatg gtatacgtgg tatgcatacc acgtatacac
     7201 attacctgag gtaagattca atgtggttgg aaacacatac acacttcagt ctgtaaatat
     7261 tcttcctcac tgaaacctgt gcttcagaaa ccatttctcg tacagctgtg cagtttattg
     7321 tagcagctgg agacaagcta aggcaggcag tgaatttaga ctaagatcag ctgaaagagt
     7381 agtttctccc ttgcagctca caaggacaga cagctaagtg gcgaggttga ctcccaatgg
     7441 gatggcgaac ttttcttctt ttcaaatttg tgtttcctaa gtgtatctta acttctgagt
     7501 gcaccaggtt gtacccatta gatcctttta ctatgacaat tttgtgcttc tctctgacag
     7561 gatgcttctc catcaagctg taatgcagga tgggagggga gggaaggagg gagggggaat
     7621 tactccttgc ctggctggag tttacagaga cactgcacag cttacactcc tgttaagtgt
     7681 aaatattcaa cacttccatt ccatttgtgt aaaaaataaa gcacacacga ttataaaatc
     7741 aagatgtata tttcatactc cgtgtgtcca tgaatatttt ttgcgtttcc agatgttggt
     7801 tgaggccgca ttgtaaaaat gcctgataga gtgtttatta taaacatgcc gtggttttct
     7861 tatataaata ttaaaacaat ttctacttta tagcaaaatt a
//
